Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_07614 Sequoiadendron giganteum HOM05D000006 ORTHO05D004030 1.1e-89 333.2 162 100.0
Mapoly0014s0119 Marchantia polymorpha HOM05D000006 ORTHO05D004030 9.4e-44 180.6 119 73.1
COL.COLO4_21821 Corchorus olitorius HOM05D000006 ORTHO05D004030 4.6e-43 178.3 118 71.2
unitig_21.g20189 Utricularia gibba HOM05D000006 ORTHO05D004030 5.1e-42 174.9 115 71.3
DCAR_014281 Daucus carota HOM05D000006 ORTHO05D004030 1.5e-41 173.3 144 63.2
Duzib093G0061 Durio zibethinus HOM05D000006 ORTHO05D004030 5.7e-41 171.4 118 69.5
Nn5g28927 Nelumbo nucifera HOM05D000006 ORTHO05D004030 5.7e-41 171.4 106 75.5
Oeu039581.2 Olea europaea HOM05D000006 ORTHO05D004030 7.4e-41 171.0 105 77.1
Thecc.08G116400 Theobroma cacao HOM05D000006 ORTHO05D004030 7.4e-41 171.0 103 76.7
MSTRG.24147 Avicennia marina HOM05D000006 ORTHO05D004030 9.7e-41 170.6 105 75.2
QL05p058776 Quercus lobata HOM05D000006 ORTHO05D004030 9.7e-41 170.6 102 78.4
Ah.05g172680 Amaranthus hybridus HOM05D000006 ORTHO05D004030 1.3e-40 170.2 106 75.5
AUR62004690 Chenopodium quinoa HOM05D000006 ORTHO05D004030 1.3e-40 170.2 107 74.8
Ciclev10001133m.g Citrus clementina HOM05D000006 ORTHO05D004030 1.3e-40 170.2 106 74.5
Duzib116G0798 Durio zibethinus HOM05D000006 ORTHO05D004030 1.3e-40 170.2 118 69.5
SGA_v2.0_scaffold25G11094 Striga asiatica HOM05D000006 ORTHO05D004030 1.3e-40 170.2 106 74.5
TAR381G0924 Trochodendron aralioides HOM05D000006 ORTHO05D004030 1.3e-40 170.2 138 62.3
Lj3g0019564 Lotus japonicus HOM05D000006 ORTHO05D004030 1.7e-40 169.9 106 77.4
PSO210G6583 Papaver somniferum HOM05D000006 ORTHO05D004030 1.7e-40 169.9 113 73.5
AT5G64610 Arabidopsis thaliana HOM05D000006 ORTHO05D004030 2.2e-40 169.5 112 73.2
MSTRG.22428 Avicennia marina HOM05D000006 ORTHO05D004030 2.2e-40 169.5 116 70.7
Migut.N03322 Erythranthe guttata HOM05D000006 ORTHO05D004030 2.2e-40 169.5 107 71.0
CiPaw.05G229200 Carya illinoinensis HOM05D000006 ORTHO05D004030 2.8e-40 169.1 106 74.5
Oeu001989.1 Olea europaea HOM05D000006 ORTHO05D004030 2.8e-40 169.1 105 76.2
PSO447G0296 Papaver somniferum HOM05D000006 ORTHO05D004030 2.8e-40 169.1 94 81.9
SEGI_25942 Sequoiadendron giganteum HOM05D000006 ORTHO05D004030 2.8e-40 169.1 102 77.5
EL10Ac1g00041 Beta vulgaris HOM05D000006 ORTHO05D004030 3.7e-40 168.7 114 71.1
MBI04_g34117_MAGBIO Magnolia biondii HOM05D000006 ORTHO05D004030 3.7e-40 168.7 113 71.7
Cpa.g.sc42.140 Carica papaya HOM05D000006 ORTHO05D004030 4.8e-40 168.3 115 70.4
Atru.chr13.1315 Acer truncatum HOM05D000006 ORTHO05D004030 6.3e-40 167.9 106 74.5
Atru.chr13.1359 Acer truncatum HOM05D000006 ORTHO05D004030 6.3e-40 167.9 106 74.5
Nn1g05200 Nelumbo nucifera HOM05D000006 ORTHO05D004030 6.3e-40 167.9 106 73.6
AUR62023606 Chenopodium quinoa HOM05D000006 ORTHO05D004030 8.2e-40 167.5 106 73.6
Ca_14036_v3 Cicer arietinum L. HOM05D000006 ORTHO05D004030 8.2e-40 167.5 106 76.4
Dinv26721 Davidia involucrata HOM05D000006 ORTHO05D004030 8.2e-40 167.5 106 74.5
Dinv27386 Davidia involucrata HOM05D000006 ORTHO05D004030 8.2e-40 167.5 115 68.7
Nitab4.5_0002496g0060 Nicotiana tabacum HOM05D000006 ORTHO05D004030 8.2e-40 167.5 102 77.5
RcHm_v2.0_Chr7g0240841 Rosa chinensis HOM05D000006 ORTHO05D004030 8.2e-40 167.5 106 74.5
THA.LOC104799527 Tarenaya hassleriana HOM05D000006 ORTHO05D004030 8.2e-40 167.5 106 74.5
Actinidia03495 Actinidia chinensis HOM05D000006 ORTHO05D004030 1.1e-39 167.2 106 74.5
Prupe.1G506200 Prunus persica HOM05D000006 ORTHO05D004030 1.1e-39 167.2 106 75.5
CiPaw.06G024600 Carya illinoinensis HOM05D000006 ORTHO05D004030 1.4e-39 166.8 105 75.2
Gohir.A06G040700 Gossypium hirsutum HOM05D000006 ORTHO05D004030 1.4e-39 166.8 118 67.8
Potri.005G171700 Populus trichocarpa HOM05D000006 ORTHO05D004030 1.4e-39 166.8 102 76.5
Sopen11g008540 Solanum pennellii HOM05D000006 ORTHO05D004030 1.4e-39 166.8 102 78.4
HPP92_004738 Vanilla planifolia HOM05D000006 ORTHO05D004030 1.4e-39 166.8 103 74.8
BcaB08g37162 Brassica carinata HOM05D000006 ORTHO05D004030 1.8e-39 166.4 106 74.5
Cfa015957 Carpinus fangiana HOM05D000006 ORTHO05D004030 1.8e-39 166.4 150 58.7
Manes.18G072700 Manihot esculenta HOM05D000006 ORTHO05D004030 1.8e-39 166.4 106 74.5
Pp3c4_18030 Physcomitrium patens HOM05D000006 ORTHO05D004030 1.8e-39 166.4 114 71.1
Aqoxy5G01525 Aquilegia oxysepala HOM05D000006 ORTHO05D004030 2.4e-39 166.0 102 77.5
AL8G42020 Arabidopsis lyrata HOM05D000006 ORTHO05D004030 2.4e-39 166.0 112 72.3
Haze_00526 Corylus avellana HOM05D000006 ORTHO05D004030 2.4e-39 166.0 106 73.6
arahy.Tifrunner.gnm1.ann1.6W1W5K Arachis hypogaea HOM05D000006 ORTHO05D004030 3.1e-39 165.6 107 74.8
arahy.Tifrunner.gnm1.ann1.B54JNT Arachis hypogaea HOM05D000006 ORTHO05D004030 3.1e-39 165.6 107 74.8
BcaB08g37191 Brassica carinata HOM05D000006 ORTHO05D004030 3.1e-39 165.6 105 75.2
A10p27700 Brassica napus HOM05D000006 ORTHO05D004030 3.1e-39 165.6 106 74.5
BraA10t44822Z Brassica rapa HOM05D000006 ORTHO05D004030 3.1e-39 165.6 106 74.5
Eucgr.F04379 Eucalyptus grandis HOM05D000006 ORTHO05D004030 3.1e-39 165.6 103 76.7
Gohir.D06G041700 Gossypium hirsutum HOM05D000006 ORTHO05D004030 3.1e-39 165.6 115 69.6
Gorai.010G046900 Gossypium raimondii HOM05D000006 ORTHO05D004030 3.1e-39 165.6 115 69.6
vmacro12808 Vaccinium macrocarpon HOM05D000006 ORTHO05D004030 3.1e-39 165.6 106 72.6
MD15G1358600 Malus domestica HOM05D000006 ORTHO05D004030 4.1e-39 165.2 102 75.5
Rhsim11G0065000 Rhododendron simsii HOM05D000006 ORTHO05D004030 4.1e-39 165.2 106 72.6
Cc04_g08910 Coffea canephora HOM05D000006 ORTHO05D004030 5.3e-39 164.9 95 80.0
Thhalv10013550m.g Eutrema salsugineum HOM05D000006 ORTHO05D004030 5.3e-39 164.9 106 73.6
Glyma.06G316400 Glycine max HOM05D000006 ORTHO05D004030 5.3e-39 164.9 106 75.5
MD08G1173300 Malus domestica HOM05D000006 ORTHO05D004030 5.3e-39 164.9 102 75.5
AT5G09740 Arabidopsis thaliana HOM05D000006 ORTHO05D004030 6.9e-39 164.5 106 72.6
Carub.0008s2540 Capsella rubella HOM05D000006 ORTHO05D004030 6.9e-39 164.5 105 74.3
Sabra05G0129200 Salix brachista HOM05D000006 ORTHO05D004030 6.9e-39 164.5 102 75.5
TPR.G12257 Trifolium pratense HOM05D000006 ORTHO05D004030 6.9e-39 164.5 104 76.9
TAR625G0616 Trochodendron aralioides HOM05D000006 ORTHO05D004030 6.9e-39 164.5 106 71.7
CSS0012091 Camellia sinensis var. sinensis HOM05D000006 ORTHO05D004030 9.1e-39 164.1 95 80.0
CANSAT56G0745 Cannabis sativa HOM05D000006 ORTHO05D004030 9.1e-39 164.1 105 70.5
Sp6g33660 Schrenkiella parvula HOM05D000006 ORTHO05D004030 9.1e-39 164.1 106 73.6
THA.LOC104819319 Tarenaya hassleriana HOM05D000006 ORTHO05D004030 9.1e-39 164.1 115 69.6
Potri.002G089500 Populus trichocarpa HOM05D000006 ORTHO05D004030 1.2e-38 163.7 102 76.5
ATR0564G159 Amborella trichopoda HOM05D000006 ORTHO05D004030 1.5e-38 163.3 102 75.5
Psat5g230080 Pisum sativum HOM05D000006 ORTHO05D004030 2.0e-38 162.9 104 76.0
CDE02G1028 Ceratophyllum demersum HOM05D000006 ORTHO05D004030 2.6e-38 162.5 115 67.0
FAN08G2703 Fragaria x ananassa HOM05D000006 ORTHO05D004030 2.6e-38 162.5 112 69.6
Medtr3g007710 Medicago truncatula HOM05D000006 ORTHO05D004030 2.6e-38 162.5 103 76.7
PGR142G3648 Punica granatum HOM05D000006 ORTHO05D004030 2.6e-38 162.5 103 75.7
Glyma.04G130300 Glycine max HOM05D000006 ORTHO05D004030 3.4e-38 162.2 106 74.5
FvH4_5g38850 Fragaria vesca HOM05D000006 ORTHO05D004030 4.5e-38 161.8 112 69.6
FAN18G2681 Fragaria x ananassa HOM05D000006 ORTHO05D004030 4.5e-38 161.8 112 69.6
Gohir.D05G234200 Gossypium hirsutum HOM05D000006 ORTHO05D004030 4.5e-38 161.8 126 65.1
Gorai.009G242400 Gossypium raimondii HOM05D000006 ORTHO05D004030 4.5e-38 161.8 126 65.1
HanXRQChr02g0044231 Helianthus annuus HOM05D000006 ORTHO05D004030 4.5e-38 161.8 94 79.8
Aa31LG1G17340 Aethionema arabicum HOM05D000006 ORTHO05D004030 5.9e-38 161.4 106 72.6
Aa31LG3G17360 Aethionema arabicum HOM05D000006 ORTHO05D004030 5.9e-38 161.4 106 71.7
Gohir.A05G231900 Gossypium hirsutum HOM05D000006 ORTHO05D004030 5.9e-38 161.4 126 64.3
Lsat_1_v5_gn_1_12240 Lactuca sativa HOM05D000006 ORTHO05D004030 5.9e-38 161.4 94 79.8
C09p67790 Brassica napus HOM05D000006 ORTHO05D004030 7.7e-38 161.0 106 74.5
BolC9t59541H Brassica oleracea HOM05D000006 ORTHO05D004030 7.7e-38 161.0 106 74.5
CARHR203660 Cardamine hirsuta HOM05D000006 ORTHO05D004030 1.0e-37 160.6 106 72.6
Thhalv10004220m.g Eutrema salsugineum HOM05D000006 ORTHO05D004030 1.0e-37 160.6 106 71.7
ECA247G3040 Erigeron canadensis HOM05D000006 ORTHO05D000091 1.3e-37 160.2 94 78.7
FAN04G0021 Fragaria x ananassa HOM05D000006 ORTHO05D004030 1.3e-37 160.2 135 60.7
FAN13G0359 Fragaria x ananassa HOM05D000006 ORTHO05D004030 1.3e-37 160.2 112 68.8
Lalb_Chr18g0049021 Lupinus albus HOM05D000006 ORTHO05D004030 1.3e-37 160.2 106 73.6
Phvul.005G011500 Phaseolus vulgaris HOM05D000006 ORTHO05D004030 1.3e-37 160.2 106 73.6
BcaC04g23307 Brassica carinata HOM05D000006 ORTHO05D004030 1.7e-37 159.8 105 71.4
A09p08740 Brassica napus HOM05D000006 ORTHO05D004030 1.7e-37 159.8 105 71.4
C09p09880 Brassica napus HOM05D000006 ORTHO05D004030 1.7e-37 159.8 105 71.4
BolC9t53896H Brassica oleracea HOM05D000006 ORTHO05D004030 1.7e-37 159.8 105 71.4
BraA09t36523Z Brassica rapa HOM05D000006 ORTHO05D004030 1.7e-37 159.8 105 71.4
Lj4A550G32 Lonicera japonica HOM05D000006 ORTHO05D004030 1.7e-37 159.8 113 70.8
Os07g0626600 Oryza sativa ssp. japonica HOM05D000006 ORTHO05D004030 2.2e-37 159.5 97 78.4
VMungo1080G1349 Vigna mungo HOM05D000006 ORTHO05D004030 2.2e-37 159.5 104 75.0
Lj4A578G72 Lonicera japonica HOM05D000006 ORTHO05D004030 2.9e-37 159.1 95 78.9
Sp2g27670 Schrenkiella parvula HOM05D000006 ORTHO05D004030 2.9e-37 159.1 105 72.4
Phvul.005G010700 Phaseolus vulgaris HOM05D000006 ORTHO05D004030 3.8e-37 158.7 107 72.9
AagrBONN_evm.TU.Sc2ySwM_344.1570 Anthoceros agrestis HOM05D000006 ORTHO05D004030 5.0e-37 158.3 112 69.6
BcaB04g19978 Brassica carinata HOM05D000006 ORTHO05D004030 6.5e-37 157.9 106 70.8
ClCG03G009080 Citrullus lanatus HOM05D000006 ORTHO05D004030 6.5e-37 157.9 103 71.8
MELO3C022788.2 Cucumis melo HOM05D000006 ORTHO05D004030 6.5e-37 157.9 103 71.8
Actinidia23042 Actinidia chinensis HOM05D000006 ORTHO05D004030 8.5e-37 157.5 106 72.6
Lj7C307G3 Lonicera japonica HOM05D000006 ORTHO05D004030 1.1e-36 157.1 102 73.5
Sc23g0000920 Simmondsia chinensis HOM05D000006 ORTHO05D004030 1.1e-36 157.1 106 69.8
CsaV3_5G023540 Cucumis sativus L. HOM05D000006 ORTHO05D004030 1.4e-36 156.8 103 71.8
AL6G20140 Arabidopsis lyrata HOM05D000006 ORTHO05D004030 1.9e-36 156.4 106 71.7
SalBow7G0198 Salvia bowleyana HOM05D000006 ORTHO05D004030 1.9e-36 156.4 105 70.5
SalBow7G3631 Salvia bowleyana HOM05D000006 ORTHO05D004030 1.9e-36 156.4 105 70.5
Zm00001eb328000 Zea mays HOM05D000006 ORTHO05D004030 1.9e-36 156.4 97 77.3
TWI79G1190 Tripterygium wilfordii HOM05D000006 ORTHO05D004030 2.5e-36 156.0 103 73.8
Sc01g0001570 Simmondsia chinensis HOM05D000006 ORTHO05D004030 5.5e-36 154.8 110 66.4
Peaxi162Scf00360g00314 Petunia axillaris HOM05D000006 ORTHO05D004030 2.1e-35 152.9 118 66.1
Zm00001eb109790 Zea mays HOM05D000006 ORTHO05D004030 4.7e-35 151.8 97 74.2
Solyc11g013520.3 Solanum lycopersicum HOM05D000006 ORTHO05D004030 3.0e-34 149.1 85 81.2
CAN.G255.14 Capsicum annuum HOM05D000006 ORTHO05D004030 1.5e-33 146.7 85 80.0
GSVIVG01008945001 Vitis vinifera HOM05D000006 ORTHO05D004030 1.5e-33 146.7 85 80.0
Sabra02G0070500 Salix brachista HOM05D000006 ORTHO05D004030 2.6e-33 146.0 146 53.4
Sed0027470 Sechium edule HOM05D000006 ORTHO05D004030 2.6e-33 146.0 104 70.2
Hund16820 Selenicereus undatus HOM05D000006 ORTHO05D004030 3.7e-32 142.1 118 61.0
SalBow6G6076 Salvia bowleyana HOM05D000006 ORTHO05D004030 1.8e-31 139.8 145 51.0
SMO351G0268 Selaginella moellendorffii HOM05D000006 ORTHO05D004030 4.1e-31 138.7 123 57.7
Nitab4.5_0000051g0130 Nicotiana tabacum HOM05D000006 ORTHO05D004030 1.9e-28 129.8 78 74.4
CBR_g17677 Chara braunii HOM05D000006 ORTHO05D004030 3.2e-28 129.0 138 52.9
TAR628G0303 Trochodendron aralioides HOM05D000006 ORTHO05D004030 4.7e-27 125.2 106 59.4
EL10Ac6g13852 Beta vulgaris HOM05D000006 ORTHO05D004030 2.0e-22 109.8 65 73.8
CARHR278580 Cardamine hirsuta HOM05D000006 ORTHO05D004030 8.5e-21 104.4 60 81.7
Aqoxy6G00495 Aquilegia oxysepala HOM05D000006 ORTHO05D004030 6.8e-18 94.7 104 47.1
MCO10G273 Micromonas commoda HOM05D000006 ORTHO05D004030 1.3e-16 90.5 98 45.9
Cre03.g143907 Chlamydomonas reinhardtii HOM05D000006 ORTHO05D004030 2.4e-15 86.3 99 45.5
SGA_v2.0_scaffold28G12032 Striga asiatica HOM05D000006 ORTHO05D004030 2.4e-15 86.3 49 83.7
Hma1.2p1_0221F.1_g093150 Hydrangea macrophylla HOM05D000006 ORTHO05D004030 4.5e-14 82.0 52 69.2
Hund22846 Selenicereus undatus HOM05D000006 ORTHO05D004030 5.9e-14 81.6 56 66.1
Glyma.06G315500 Glycine max HOM05D002539 ORTHO05D002876 5.0e-13 78.6 51 76.5
Pp3c13_14710 Physcomitrium patens HOM05D000006 ORTHO05D004030 4.2e-12 75.5 51 66.7
CDE07G1414 Ceratophyllum demersum HOM05D000006 ORTHO05D004030 2.3e-10 69.7 61 52.5
CAN.G222.83 Capsicum annuum HOM05D000006 ORTHO05D004030 1.2e-09 67.4 63 58.7
PRCOL_00001934 Prasinoderma coloniale HOM05D000006 ORTHO05D004030 3.4e-09 65.9 113 36.3
PSO541G6025 Papaver somniferum HOM05D000006 ORTHO05D004030 6.3e-08 61.6 56 44.6
PSO675G4731 Papaver somniferum HOM05D000006 ORTHO05D004030 6.3e-08 61.6 56 44.6
CAN.G1733.7 Capsicum annuum HOM05D000006 ORTHO05D004030 1.6e-06 57.0 46 63.0


User provided reference genes

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