Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_06455 Sequoiadendron giganteum HOM05D004528 ORTHO05D005815 1.1e-232 809.7 415 100.0
MBI01_g09956_MAGBIO Magnolia biondii HOM05D004528 ORTHO05D005815 2.4e-184 649.0 411 76.2
FvH4_1g07290 Fragaria vesca HOM05D004528 ORTHO05D005815 7.4e-178 627.5 413 74.3
FAN19G1322 Fragaria x ananassa HOM05D004528 ORTHO05D005815 9.7e-178 627.1 413 74.1
Ciclev10008462m.g Citrus clementina HOM05D004528 ORTHO05D005815 3.7e-177 625.2 413 74.3
arahy.Tifrunner.gnm1.ann1.A138U3 Arachis hypogaea HOM05D004528 ORTHO05D005815 4.8e-177 624.8 413 74.8
VMungo1215G0680 Vigna mungo HOM05D004528 ORTHO05D005815 4.8e-177 624.8 413 74.6
RcHm_v2.0_Chr2g0093221 Rosa chinensis HOM05D004528 ORTHO05D005815 1.1e-176 623.6 413 73.6
GSVIVG01015212001 Vitis vinifera HOM05D004528 ORTHO05D005815 1.1e-176 623.6 413 72.9
Dinv36760 Davidia involucrata HOM05D004528 ORTHO05D005815 2.4e-176 622.5 413 74.3
arahy.Tifrunner.gnm1.ann1.PT0GJ5 Arachis hypogaea HOM05D004528 ORTHO05D005815 4.1e-176 621.7 413 74.6
Manes.16G102700 Manihot esculenta HOM05D004528 ORTHO05D005815 4.1e-176 621.7 413 73.1
QL02p062827 Quercus lobata HOM05D004528 ORTHO05D005815 4.1e-176 621.7 416 73.1
FAN23G0078 Fragaria x ananassa HOM05D004528 ORTHO05D005815 5.3e-176 621.3 413 73.1
TWI34G0432 Tripterygium wilfordii HOM05D004528 ORTHO05D005815 6.9e-176 620.9 413 73.4
Eucgr.C00900 Eucalyptus grandis HOM05D004528 ORTHO05D005815 9.1e-176 620.5 415 72.3
FAN28G2769 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.2e-175 620.2 413 73.1
Prupe.7G211100 Prunus persica HOM05D004528 ORTHO05D005815 1.2e-175 620.2 413 73.6
Thecc.09G090300 Theobroma cacao HOM05D004528 ORTHO05D005815 2.0e-175 619.4 413 73.4
COL.COLO4_18209 Corchorus olitorius HOM05D004528 ORTHO05D005815 3.4e-175 618.6 413 73.1
CSS0033534 Camellia sinensis var. sinensis HOM05D004528 ORTHO05D005815 5.9e-175 617.8 413 73.1
CiPaw.03G217000 Carya illinoinensis HOM05D004528 ORTHO05D005815 5.9e-175 617.8 415 73.3
MD15G1206300 Malus domestica HOM05D004528 ORTHO05D005815 1.0e-174 617.1 413 73.8
Phvul.003G137300 Phaseolus vulgaris HOM05D004528 ORTHO05D005815 1.0e-174 617.1 413 73.6
Potri.006G221700 Populus trichocarpa HOM05D004528 ORTHO05D005815 1.0e-174 617.1 413 72.6
Duzib150G1454 Durio zibethinus HOM05D004528 ORTHO05D005815 1.3e-174 616.7 409 73.6
Aqoxy7G01232 Aquilegia oxysepala HOM05D004528 ORTHO05D005815 1.7e-174 616.3 413 72.9
Mapoly0005s0151 Marchantia polymorpha HOM05D004528 ORTHO05D005815 1.7e-174 616.3 409 75.8
Gorai.010G082500 Gossypium raimondii HOM05D004528 ORTHO05D005815 3.8e-174 615.1 413 73.1
TAR626G1836 Trochodendron aralioides HOM05D004528 ORTHO05D005815 5.0e-174 614.8 413 72.6
Hma1.2p1_0800F.1_g220090 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 1.4e-173 613.2 411 73.2
MD02G1077700 Malus domestica HOM05D004528 ORTHO05D005815 2.5e-173 612.5 413 73.1
HPP92_010493 Vanilla planifolia HOM05D004528 ORTHO05D005815 3.2e-173 612.1 414 72.2
Lalb_Chr13g0299741 Lupinus albus HOM05D004528 ORTHO05D005815 9.4e-173 610.5 413 71.9
ECA240G0155 Erigeron canadensis HOM05D004528 ORTHO05D005815 2.1e-172 609.4 415 71.3
MSTRG.17774 Avicennia marina HOM05D004528 ORTHO05D005815 2.7e-172 609.0 415 72.0
SalBow6G2464 Salvia bowleyana HOM05D004528 ORTHO05D005815 4.7e-172 608.2 415 72.3
vmacro17227 Vaccinium macrocarpon HOM05D004528 ORTHO05D005815 4.7e-172 608.2 444 68.7
Glyma.17G055500 Glycine max HOM05D004528 ORTHO05D005815 3.0e-171 605.5 413 72.2
Haze_25904 Corylus avellana HOM05D004528 ORTHO05D005815 8.8e-171 604.0 411 71.8
Glyma.13G103500 Glycine max HOM05D004528 ORTHO05D005815 1.5e-170 603.2 411 72.3
Migut.J00603 Erythranthe guttata HOM05D004528 ORTHO05D005815 2.0e-170 602.8 415 71.8
Sed0012435 Sechium edule HOM05D004528 ORTHO05D005815 3.3e-170 602.1 413 69.5
SGA_v2.0_scaffold62G21604 Striga asiatica HOM05D004528 ORTHO05D005815 4.4e-170 601.7 415 71.1
Lj4g0008156 Lotus japonicus HOM05D004528 ORTHO05D005815 5.7e-170 601.3 411 72.0
CANSAT56G0596 Cannabis sativa HOM05D004528 ORTHO05D005815 2.8e-169 599.0 413 70.9
CANSAT56G1313 Cannabis sativa HOM05D004528 ORTHO05D005815 2.8e-169 599.0 413 70.9
ClCG11G001780 Citrullus lanatus HOM05D004528 ORTHO05D005815 6.3e-169 597.8 413 69.7
DCAR_011978 Daucus carota HOM05D004528 ORTHO05D005815 6.3e-169 597.8 415 71.3
Nitab4.5_0011030g0010 Nicotiana tabacum HOM05D004528 ORTHO05D005815 8.2e-169 597.4 413 70.7
Solyc07g039210.4 Solanum lycopersicum HOM05D004528 ORTHO05D005815 1.1e-168 597.0 414 70.0
CsaV3_2G001490 Cucumis sativus L. HOM05D004528 ORTHO05D005815 1.8e-168 596.3 409 69.4
PGSC0003DMG400013151 Solanum tuberosum HOM05D004528 ORTHO05D005815 1.8e-168 596.3 414 70.5
TPR.G3725 Trifolium pratense HOM05D004528 ORTHO05D005815 1.8e-168 596.3 413 70.5
Sopen07g017560 Solanum pennellii HOM05D004528 ORTHO05D005815 2.4e-168 595.9 414 69.8
Lsat_1_v5_gn_7_37341 Lactuca sativa HOM05D004528 ORTHO05D005815 3.1e-168 595.5 415 69.9
Psat3g072560 Pisum sativum HOM05D004528 ORTHO05D005815 4.1e-168 595.1 413 70.5
BolC7t40641H Brassica oleracea HOM05D004528 ORTHO05D005815 9.1e-168 594.0 413 70.2
Cc06_g11330 Coffea canephora HOM05D004528 ORTHO05D005815 9.1e-168 594.0 414 69.6
Lj7A674G30 Lonicera japonica HOM05D004528 ORTHO05D005815 9.1e-168 594.0 409 72.1
C07p02330 Brassica napus HOM05D004528 ORTHO05D005815 2.0e-167 592.8 413 70.2
BcaC06g36598 Brassica carinata HOM05D004528 ORTHO05D005815 2.6e-167 592.4 413 70.0
BraA07t27910Z Brassica rapa HOM05D004528 ORTHO05D005815 2.6e-167 592.4 413 70.0
CAN.G1208.1 Capsicum annuum HOM05D004528 ORTHO05D005815 4.5e-167 591.7 412 69.7
PGR142G0229 Punica granatum HOM05D004528 ORTHO05D005815 5.9e-167 591.3 412 71.1
Thhalv10022707m.g Eutrema salsugineum HOM05D004528 ORTHO05D005815 1.0e-166 590.5 413 69.7
A07p01220 Brassica napus HOM05D004528 ORTHO05D005815 1.3e-166 590.1 413 69.7
Nitab4.5_0005634g0070 Nicotiana tabacum HOM05D004528 ORTHO05D005815 1.7e-166 589.7 419 69.7
Carub.0003s3385 Capsella rubella HOM05D004528 ORTHO05D005815 2.2e-166 589.3 413 69.5
Oeu018425.1 Olea europaea HOM05D004528 ORTHO05D005815 5.0e-166 588.2 415 70.6
CARHR109990 Cardamine hirsuta HOM05D004528 ORTHO05D005815 8.5e-166 587.4 413 69.2
AL3G48690 Arabidopsis lyrata HOM05D004528 ORTHO05D005815 2.5e-165 585.9 413 68.8
Peaxi162Scf00709g00003 Petunia axillaris HOM05D004528 ORTHO05D005815 3.2e-165 585.5 420 69.0
BcaB08g34873 Brassica carinata HOM05D004528 ORTHO05D005815 5.5e-165 584.7 413 69.0
AUR62033986 Chenopodium quinoa HOM05D004528 ORTHO05D005815 7.2e-165 584.3 410 72.2
THA.LOC104820025 Tarenaya hassleriana HOM05D004528 ORTHO05D005815 3.6e-164 582.0 413 68.8
C05p19590 Brassica napus HOM05D004528 ORTHO05D005815 1.0e-163 580.5 425 67.8
BolC5t30662H Brassica oleracea HOM05D004528 ORTHO05D005815 1.0e-163 580.5 425 67.8
Pp3c17_12810 Physcomitrium patens HOM05D004528 ORTHO05D005815 1.0e-163 580.5 399 72.9
Aa31LG8G16570 Aethionema arabicum HOM05D004528 ORTHO05D005815 1.8e-163 579.7 413 68.3
PSO832G3660 Papaver somniferum HOM05D004528 ORTHO05D005815 1.8e-163 579.7 414 69.3
Nn6g35452 Nelumbo nucifera HOM05D004528 ORTHO05D005815 3.0e-163 578.9 413 70.9
BcaC05g26001 Brassica carinata HOM05D004528 ORTHO05D005815 6.7e-163 577.8 425 67.5
PSO063G0639 Papaver somniferum HOM05D004528 ORTHO05D005815 1.1e-162 577.0 414 69.1
AT2G19560 Arabidopsis thaliana HOM05D004528 ORTHO05D005815 1.3e-161 573.5 413 67.8
EL10Ac8g19227 Beta vulgaris HOM05D004528 ORTHO05D005815 2.8e-161 572.4 437 67.7
Medtr7g091650 Medicago truncatula HOM05D004528 ORTHO05D005815 4.8e-161 571.6 414 68.6
Actinidia25256 Actinidia chinensis HOM05D004528 ORTHO05D005815 1.8e-160 569.7 409 69.7
AagrBONN_evm.TU.Sc2ySwM_344.906 Anthoceros agrestis HOM05D004528 ORTHO05D005815 3.1e-160 568.9 412 70.6
SMO117G0048 Selaginella moellendorffii HOM05D004528 ORTHO05D005815 4.1e-160 568.5 405 69.4
Sp3g32930 Schrenkiella parvula HOM05D004528 ORTHO05D005815 7.0e-160 567.8 413 67.8
Os09g0386400 Oryza sativa ssp. japonica HOM05D004528 ORTHO05D005815 2.9e-158 562.4 412 67.2
unitig_748.g7306 Utricularia gibba HOM05D004528 ORTHO05D005815 3.2e-157 558.9 429 64.6
SHI24590 Sapria himalayana HOM05D004528 ORTHO05D005815 5.9e-151 538.1 410 66.3
Ca_08460_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 1.0e-150 537.3 405 66.7
BcaB04g16932 Brassica carinata HOM05D004528 ORTHO05D005815 2.9e-150 535.8 415 64.6
Gohir.D06G070800 Gossypium hirsutum HOM05D004528 ORTHO05D005815 2.9e-150 535.8 370 71.1
Gohir.A06G072200 Gossypium hirsutum HOM05D004528 ORTHO05D005815 2.5e-149 532.7 374 69.8
Rhsim05G0022000 Rhododendron simsii HOM05D004528 ORTHO05D005815 8.8e-147 524.2 316 81.3
Sc18g0002070 Simmondsia chinensis HOM05D004528 ORTHO05D005815 2.3e-142 509.6 370 69.2
MELO3C004622.2 Cucumis melo HOM05D004528 ORTHO05D005815 2.9e-142 509.2 413 61.3
Sabra06G0171200 Salix brachista HOM05D004528 ORTHO05D005815 3.2e-136 489.2 484 55.4
Cpa.g.sc283.9 Carica papaya HOM05D004528 ORTHO05D005815 4.1e-136 488.8 411 60.8
AUR62027494 Chenopodium quinoa HOM05D004528 ORTHO05D005815 5.9e-135 485.0 410 63.2
BcaB04g16933 Brassica carinata HOM05D004528 ORTHO05D005815 1.5e-133 480.3 417 58.8
FAN26G2732 Fragaria x ananassa HOM05D004528 ORTHO05D005815 5.6e-133 478.4 281 82.2
FAN26G1375 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.1e-132 476.5 281 81.9
A07p01200 Brassica napus HOM05D004528 ORTHO05D005815 5.2e-123 445.3 305 69.8
Hma1.2p1_0800F.1_g220100 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 7.1e-120 434.9 257 81.7
Zm00001eb311810 Zea mays HOM05D004528 ORTHO05D005815 6.8e-115 418.3 256 77.7
Atru.chr7.1579 Acer truncatum HOM05D004528 ORTHO05D005815 7.6e-114 414.8 295 67.5
HPP92_010492 Vanilla planifolia HOM05D004528 ORTHO05D005815 5.6e-109 398.7 284 68.3
CDE02G2136 Ceratophyllum demersum HOM05D004528 ORTHO05D005815 1.1e-107 394.4 314 64.3
CBR_g78884 Chara braunii HOM05D004528 ORTHO05D005815 6.6e-102 375.2 344 54.7
BcaB03g16744 Brassica carinata HOM05D004528 ORTHO05D005815 2.7e-95 353.2 292 64.4
BcaB03g16691 Brassica carinata HOM05D004528 ORTHO05D005815 6.2e-92 342.0 313 56.5
BcaB03g16690 Brassica carinata HOM05D004528 ORTHO05D005815 3.8e-89 332.8 284 59.2
Ca_30052_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 6.5e-81 305.4 191 79.6
CARHR052830 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.4e-74 283.1 236 61.0
MCO16G315 Micromonas commoda HOM05D004528 ORTHO05D005815 2.2e-68 263.8 401 37.7
Oeu018237.1 Olea europaea HOM05D004528 ORTHO05D005815 2.8e-68 263.5 200 64.5
PGSC0003DMG400022053 Solanum tuberosum HOM05D004528 ORTHO05D005815 1.1e-67 261.5 173 74.0
CARHR051760 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.8e-67 260.8 199 64.3
CARHR054270 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.3e-61 240.0 204 61.3
HanXRQChr09g0238111 Helianthus annuus HOM05D004528 ORTHO05D005815 1.8e-59 234.2 186 61.3
ATR0026G021 Amborella trichopoda HOM05D004528 ORTHO05D005815 1.5e-58 231.1 139 82.0
PRCOL_00001383 Prasinoderma coloniale HOM05D004528 ORTHO05D005815 9.4e-56 221.9 318 36.5
Cre02.g110400 Chlamydomonas reinhardtii HOM05D004528 ORTHO05D005815 7.4e-53 212.2 410 32.9
CARHR122310 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.5e-48 197.2 126 74.6
MD15G1352000 Malus domestica HOM05D004528 ORTHO05D005815 5.2e-46 189.5 219 47.9
arahy.Tifrunner.gnm1.ann1.43843R Arachis hypogaea HOM05D004528 ORTHO05D005815 1.1e-40 171.8 120 65.8
arahy.Tifrunner.gnm1.ann1.VVLB7Q Arachis hypogaea HOM05D004528 ORTHO05D005815 9.8e-37 158.7 102 71.6
ATR0026G011 Amborella trichopoda HOM05D004528 ORTHO05D005815 1.8e-35 154.5 106 67.9
CARHR052790 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.6e-34 151.4 198 46.5
ATR0026G010 Amborella trichopoda HOM05D004528 ORTHO05D005815 7.2e-32 142.5 80 82.5
arahy.Tifrunner.gnm1.ann1.DFU5EN Arachis hypogaea HOM05D004528 ORTHO05D005815 7.2e-32 142.5 83 78.3
Ah.14g085220 Amaranthus hybridus HOM05D004528 ORTHO05D005815 1.6e-31 141.4 79 86.1
CARHR122320 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.4e-27 128.3 176 43.8
CARHR051750 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.4e-27 127.5 160 44.4
RcHm_v2.0_Chr7g0206721 Rosa chinensis HOM05D004528 ORTHO05D005815 8.6e-25 119.0 115 57.4
Sp2g03965 Schrenkiella parvula HOM05D004528 ORTHO05D005815 2.8e-23 114.0 113 51.3
RcHm_v2.0_Chr7g0207111 Rosa chinensis HOM05D004528 ORTHO05D005815 3.0e-17 94.0 99 54.5
BcaC03g15601 Brassica carinata HOM05D004528 ORTHO05D032255 1.9e-16 91.3 130 46.2
FAN23G1719 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.9e-16 91.3 51 82.4
BolC2t09319H Brassica oleracea HOM05D004528 ORTHO05D032255 1.6e-15 88.2 159 39.0
C02p33900 Brassica napus HOM05D004528 ORTHO05D032255 2.3e-14 84.3 195 35.4
Sopen12g027230 Solanum pennellii HOM05D004528 ORTHO05D051045 5.2e-14 83.2 154 35.7
RcHm_v2.0_Chr7g0207281 Rosa chinensis HOM05D004528 ORTHO05D005815 3.4e-13 80.5 54 77.8
CARHR054260 Cardamine hirsuta HOM05D004528 ORTHO05D005815 8.3e-12 75.9 50 70.0
arahy.Tifrunner.gnm1.ann1.1S90RN Arachis hypogaea HOM05D004528 ORTHO05D005815 1.3e-09 68.6 55 60.0
arahy.Tifrunner.gnm1.ann1.UXE40S Arachis hypogaea HOM05D004528 ORTHO05D005815 3.9e-09 67.0 83 44.6
RcHm_v2.0_Chr7g0230831 Rosa chinensis HOM05D004528 ORTHO05D005815 1.6e-07 61.6 38 76.3


User provided reference genes

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