Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_06250 Sequoiadendron giganteum HOM05D001734 ORTHO05D003483 1.1e-53 213.0 103 100.0
COL.COLO4_30039 Corchorus olitorius HOM05D001734 ORTHO05D003483 4.9e-22 107.8 87 52.9
ATR0730G017 Amborella trichopoda HOM05D001734 ORTHO05D003483 8.4e-22 107.1 101 48.5
PSO063G7150 Papaver somniferum HOM05D001734 ORTHO05D003483 9.2e-21 103.6 86 53.5
PSO063G0326 Papaver somniferum HOM05D001734 ORTHO05D003483 2.1e-20 102.4 86 53.5
PSO732G0258 Papaver somniferum HOM05D001734 ORTHO05D003483 2.1e-20 102.4 86 53.5
ClCG06G017040 Citrullus lanatus HOM05D001734 ORTHO05D003483 2.7e-20 102.1 99 49.5
RcHm_v2.0_Chr6g0271131 Rosa chinensis HOM05D001734 ORTHO05D003483 4.6e-20 101.3 87 51.7
arahy.Tifrunner.gnm1.ann1.2D0TBT Arachis hypogaea HOM05D001734 ORTHO05D003483 6.0e-20 100.9 86 51.2
Thecc.03G012800 Theobroma cacao HOM05D001734 ORTHO05D003483 6.0e-20 100.9 87 50.6
Duzib084G0583 Durio zibethinus HOM05D001734 ORTHO05D003483 7.8e-20 100.5 87 50.6
Gohir.A09G171700 Gossypium hirsutum HOM05D001734 ORTHO05D003483 7.8e-20 100.5 97 47.4
Gorai.006G189100 Gossypium raimondii HOM05D001734 ORTHO05D003483 7.8e-20 100.5 97 47.4
Gohir.A09G171650 Gossypium hirsutum HOM05D001734 ORTHO05D003483 1.0e-19 100.1 97 47.4
Nn4g22757 Nelumbo nucifera HOM05D001734 ORTHO05D003483 1.0e-19 100.1 86 51.2
TWI14G0283 Tripterygium wilfordii HOM05D001734 ORTHO05D003483 1.3e-19 99.8 86 50.0
TAR629G2960 Trochodendron aralioides HOM05D001734 ORTHO05D003483 1.3e-19 99.8 101 46.5
Peaxi162Scf00009g00112 Petunia axillaris HOM05D001734 ORTHO05D003483 1.7e-19 99.4 99 47.5
Pp3c2_23700 Physcomitrium patens HOM05D001734 ORTHO05D003483 1.7e-19 99.4 86 55.8
QL10p011601 Quercus lobata HOM05D001734 ORTHO05D003483 1.7e-19 99.4 86 53.5
CiPaw.11G026100 Carya illinoinensis HOM05D001734 ORTHO05D003483 2.3e-19 99.0 86 52.3
Glyma.04G182900 Glycine max HOM05D001734 ORTHO05D003483 2.3e-19 99.0 86 51.2
GSVIVG01007755001 Vitis vinifera HOM05D001734 ORTHO05D003483 3.0e-19 98.6 86 51.2
CANSAT80G1574 Cannabis sativa HOM05D001734 ORTHO05D003483 3.9e-19 98.2 86 51.2
Ca_16175_v3 Cicer arietinum L. HOM05D001734 ORTHO05D003483 5.1e-19 97.8 86 50.0
CsaV3_1G001470 Cucumis sativus L. HOM05D001734 ORTHO05D003483 5.1e-19 97.8 99 46.5
Lalb_Chr08g0236521 Lupinus albus HOM05D001734 ORTHO05D003483 5.1e-19 97.8 86 51.2
Lj1g0011912 Lotus japonicus HOM05D001734 ORTHO05D003483 6.6e-19 97.4 86 48.8
MELO3C017087.2 Cucumis melo HOM05D001734 ORTHO05D003483 8.7e-19 97.1 99 46.5
Dinv20652 Davidia involucrata HOM05D001734 ORTHO05D003483 1.1e-18 96.7 99 45.5
Phvul.009G178400 Phaseolus vulgaris HOM05D001734 ORTHO05D003483 1.1e-18 96.7 86 51.2
Potri.015G076650 Populus trichocarpa HOM05D001734 ORTHO05D003483 1.1e-18 96.7 101 49.5
PGR044G0033 Punica granatum HOM05D001734 ORTHO05D003483 1.1e-18 96.7 86 51.2
Medtr3g077860 Medicago truncatula HOM05D001734 ORTHO05D003483 1.5e-18 96.3 86 50.0
Sed0023277 Sechium edule HOM05D001734 ORTHO05D003483 1.5e-18 96.3 99 48.5
VMungo1309G1926 Vigna mungo HOM05D000002 ORTHO05D000001 1.5e-18 96.3 86 50.0
COL.COLO4_30229 Corchorus olitorius HOM05D001734 ORTHO05D003483 1.9e-18 95.9 87 48.3
Rhsim08G0172200 Rhododendron simsii HOM05D001734 ORTHO05D003483 2.5e-18 95.5 99 45.5
Cpa.g.sc1166.1 Carica papaya HOM05D001734 ORTHO05D003483 3.3e-18 95.1 87 50.6
vmacro19389 Vaccinium macrocarpon HOM05D001734 ORTHO05D003483 3.3e-18 95.1 99 44.4
Lj9A448T39 Lonicera japonica HOM05D001734 ORTHO05D003483 4.3e-18 94.7 110 42.7
Manes.06G105000 Manihot esculenta HOM05D001734 ORTHO05D003483 4.3e-18 94.7 86 48.8
Sc04g0001800 Simmondsia chinensis HOM05D001734 ORTHO05D003483 5.6e-18 94.4 98 44.9
HPP92_004845 Vanilla planifolia HOM05D002152 ORTHO05D003483 5.6e-18 94.4 85 52.9
Eucgr.K02842 Eucalyptus grandis HOM05D001734 ORTHO05D003483 7.3e-18 94.0 87 51.7
Sopen03g032020 Solanum pennellii HOM05D001734 ORTHO05D003483 7.3e-18 94.0 87 50.6
Atru.chr9.2479 Acer truncatum HOM05D001734 ORTHO05D003483 1.3e-17 93.2 86 45.3
Cfa019134 Carpinus fangiana HOM05D001734 ORTHO05D003483 1.3e-17 93.2 86 51.2
Cc04_g14140 Coffea canephora HOM05D001734 ORTHO05D003483 1.3e-17 93.2 99 42.4
Migut.I00009 Erythranthe guttata HOM05D001734 ORTHO05D003483 1.3e-17 93.2 85 49.4
SalBow5G1563 Salvia bowleyana HOM05D001734 ORTHO05D003483 1.3e-17 93.2 85 50.6
MD06G1173700 Malus domestica HOM05D001734 ORTHO05D003483 2.1e-17 92.4 89 49.4
Hund02745 Selenicereus undatus HOM05D001734 ORTHO05D003483 2.1e-17 92.4 83 47.0
Nitab4.5_0000984g0080 Nicotiana tabacum HOM05D001734 ORTHO05D003483 2.8e-17 92.0 87 50.6
EL10Ac5g10743 Beta vulgaris HOM05D001734 ORTHO05D003483 3.6e-17 91.7 98 43.9
CAN.G1305.20 Capsicum annuum HOM05D001734 ORTHO05D003483 8.1e-17 90.5 87 48.3
FvH4_2g11670 Fragaria vesca HOM05D001734 ORTHO05D003483 8.1e-17 90.5 92 42.4
FAN24G1896 Fragaria x ananassa HOM05D001734 ORTHO05D003483 8.1e-17 90.5 92 42.4
HanXRQChr02g0036361 Helianthus annuus HOM05D001734 ORTHO05D003483 1.1e-16 90.1 83 51.8
Thhalv10010050m.g Eutrema salsugineum HOM05D001734 ORTHO05D003483 1.8e-16 89.4 86 45.3
FAN05G0227 Fragaria x ananassa HOM05D001734 ORTHO05D003483 1.8e-16 89.4 91 42.9
FAN15G3378 Fragaria x ananassa HOM05D001734 ORTHO05D003483 2.4e-16 89.0 92 42.4
THA.LOC104818218 Tarenaya hassleriana HOM05D001734 ORTHO05D003483 3.1e-16 88.6 85 45.9
MSTRG.11455 Avicennia marina HOM05D001734 ORTHO05D003483 4.0e-16 88.2 95 46.3
CDE07G0247 Ceratophyllum demersum HOM05D001734 ORTHO05D003483 6.9e-16 87.4 98 40.8
AT3G48190 Arabidopsis thaliana HOM05D001734 ORTHO05D003483 9.0e-16 87.0 86 45.3
Lsat_1_v5_gn_1_27061 Lactuca sativa HOM05D001734 ORTHO05D003483 1.2e-15 86.7 83 48.2
Prupe.5G173600 Prunus persica HOM05D001734 ORTHO05D003483 1.5e-15 86.3 86 47.7
SGA_v2.0_scaffold90G27914 Striga asiatica HOM05D001734 ORTHO05D003483 1.5e-15 86.3 80 47.5
Carub.0005s1431 Capsella rubella HOM05D001734 ORTHO05D003483 3.4e-15 85.1 86 43.0
Rhsim06G0125100 Rhododendron simsii HOM05D001734 ORTHO05D003483 5.8e-15 84.3 86 46.5
Os01g0106700 Oryza sativa ssp. japonica HOM05D001734 ORTHO05D003483 7.6e-15 84.0 85 44.7
C03p66700 Brassica napus HOM05D001734 ORTHO05D003483 1.7e-14 82.8 86 43.0
BolC3t18938H Brassica oleracea HOM05D001734 ORTHO05D003483 1.7e-14 82.8 86 43.0
ECA247G1446 Erigeron canadensis HOM05D001734 ORTHO05D003483 2.2e-14 82.4 83 45.8
A06p27460 Brassica napus HOM05D001734 ORTHO05D003483 3.8e-14 81.6 86 41.9
BraA06t25686Z Brassica rapa HOM05D001734 ORTHO05D003483 3.8e-14 81.6 86 41.9
SHI17018 Sapria himalayana HOM05D000105 ORTHO05D000023 4.9e-14 81.3 86 41.9
Aa31LG4G16790 Aethionema arabicum HOM05D001734 ORTHO05D003483 8.4e-14 80.5 86 41.9
CARHR156920 Cardamine hirsuta HOM05D001734 ORTHO05D003483 1.1e-13 80.1 87 40.2
Mapoly0081s0051 Marchantia polymorpha HOM05D001734 ORTHO05D003483 1.4e-13 79.7 98 42.9
Aqoxy3G02937 Aquilegia oxysepala HOM05D001734 ORTHO05D003483 1.2e-12 76.6 99 41.4
MD14G1180200 Malus domestica HOM05D001734 ORTHO05D003483 2.1e-12 75.9 95 42.1
DCAR_026136 Daucus carota HOM05D001734 ORTHO05D003483 6.0e-12 74.3 97 35.1
AagrBONN_evm.TU.Sc2ySwM_117.1596 Anthoceros agrestis HOM05D001734 ORTHO05D003483 1.0e-11 73.6 99 45.5
Oeu016387.4 Olea europaea HOM05D001734 ORTHO05D003483 4.3e-10 68.2 59 52.5
Zm00001eb126710 Zea mays HOM05D001734 ORTHO05D003483 5.6e-10 67.8 99 35.4
Migut.C00312 Erythranthe guttata HOM05D001734 ORTHO05D003483 9.0e-08 60.5 85 41.2


User provided reference genes

Program Settings