Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_06232 Sequoiadendron giganteum HOM05D011138 ORTHO05D010935 0.0e+00 1861.7 942 100.0
SEGI_27020 Sequoiadendron giganteum HOM05D011138 ORTHO05D010935 0.0e+00 1649.0 926 90.6
SEGI_35027 Sequoiadendron giganteum HOM05D011138 ORTHO05D010935 0.0e+00 1628.2 926 90.1
SEGI_16845 Sequoiadendron giganteum HOM05D011138 ORTHO05D010935 1.9e-269 932.9 597 78.7
SMO340G0315 Selaginella moellendorffii HOM05D011138 ORTHO05D010935 2.9e-153 547.0 962 37.9
SMO361G0816 Selaginella moellendorffii HOM05D011138 ORTHO05D010935 6.1e-135 486.1 1012 34.5
AagrBONN_evm.TU.Sc2ySwM_117.572 Anthoceros agrestis HOM05D011138 ORTHO05D010935 5.7e-125 453.0 963 32.7
Mapoly0032s0134 Marchantia polymorpha HOM05D000188 ORTHO05D010935 2.0e-117 427.9 783 36.3
Mapoly0032s0139 Marchantia polymorpha HOM05D000188 ORTHO05D010935 1.2e-114 418.7 743 36.2
SEGI_10774 Sequoiadendron giganteum HOM05D000188 ORTHO05D010935 9.1e-107 392.5 348 66.1
AagrBONN_evm.TU.Sc2ySwM_117.575 Anthoceros agrestis HOM05D000188 ORTHO05D010935 3.7e-100 370.5 808 32.9
AagrBONN_evm.TU.Sc2ySwM_344.744 Anthoceros agrestis HOM05D011138 ORTHO05D010935 5.0e-97 360.1 939 31.0
SEGI_24621 Sequoiadendron giganteum HOM05D011138 ORTHO05D010935 1.6e-87 328.6 213 77.9
SEGI_37116 Sequoiadendron giganteum HOM05D000188 ORTHO05D010935 2.7e-82 311.2 880 27.6
SEGI_27061 Sequoiadendron giganteum HOM05D000188 ORTHO05D010935 2.1e-79 301.6 866 27.0
AagrBONN_evm.TU.Sc2ySwM_344.725 Anthoceros agrestis HOM05D011138 ORTHO05D010935 1.7e-76 292.0 587 31.2
SEGI_28840 Sequoiadendron giganteum HOM05D013172 ORTHO05D010935 2.0e-61 241.9 747 27.7
SEGI_20237 Sequoiadendron giganteum HOM05D013172 ORTHO05D010935 8.7e-57 226.5 755 26.9
SEGI_10404 Sequoiadendron giganteum HOM05D013172 ORTHO05D010935 7.3e-56 223.4 722 27.4
SMO240G0022 Selaginella moellendorffii HOM05D000188 ORTHO05D010935 3.4e-53 214.5 188 53.7
CBR_g21905 Chara braunii HOM05D000188 ORTHO05D010935 1.1e-48 199.5 534 30.9
Cre04.g218900 Chlamydomonas reinhardtii HOM05D003621 ORTHO05D010935 1.1e-40 172.9 495 31.7
MCO17G053 Micromonas commoda HOM05D000188 ORTHO05D010935 1.3e-39 169.5 786 24.8
Cre04.g219000 Chlamydomonas reinhardtii HOM05D003621 ORTHO05D010935 1.2e-37 162.9 623 27.3
SEGI_07966 Sequoiadendron giganteum HOM05D013172 ORTHO05D385857 5.1e-33 147.5 671 26.7
SEGI_37815 Sequoiadendron giganteum HOM05D013172 ORTHO05D385736 1.5e-32 146.0 643 25.7
CBR_g45940 Chara braunii HOM05D003704 ORTHO05D010935 4.5e-29 134.4 533 27.0
CBR_g54014 Chara braunii HOM05D000188 ORTHO05D010935 1.3e-28 132.9 190 34.2
CBR_g46745 Chara braunii HOM05D001523 ORTHO05D010935 1.8e-25 122.5 477 28.1
CBR_g46748 Chara braunii HOM05D000019 ORTHO05D000048 3.0e-25 121.7 509 27.3
Cre03.g166850 Chlamydomonas reinhardtii HOM05D003704 ORTHO05D010935 2.0e-21 109.0 149 38.9
SEGI_14527 Sequoiadendron giganteum HOM05D000188 ORTHO05D010935 2.5e-16 92.0 109 45.9
AagrBONN_evm.TU.Sc2ySwM_368.337 Anthoceros agrestis HOM05D011138 ORTHO05D010935 6.3e-15 87.4 110 41.8
SEGI_19000 Sequoiadendron giganteum HOM05D000188 ORTHO05D010935 1.1e-14 86.7 105 43.8
SEGI_21078 Sequoiadendron giganteum HOM05D013172 ORTHO05D010935 2.4e-14 85.5 102 44.1
SEGI_28430 Sequoiadendron giganteum HOM05D013172 ORTHO05D010935 1.2e-13 83.2 101 43.6
AagrBONN_evm.TU.Sc2ySwM_344.1100 Anthoceros agrestis HOM05D003704 ORTHO05D005892 5.1e-09 67.8 132 36.4
MCO01G629 Micromonas commoda HOM05D003704 ORTHO05D005892 6.7e-09 67.4 130 35.4
PRCOL_00007279 Prasinoderma coloniale HOM05D003704 ORTHO05D005892 8.8e-09 67.0 146 35.6
Glyma.09G285300 Glycine max HOM05D003704 ORTHO05D005892 1.5e-08 66.2 177 28.8
SMO230G0016 Selaginella moellendorffii HOM05D003704 ORTHO05D005892 1.5e-08 66.2 173 30.6
MSTRG.28042 Avicennia marina HOM05D003704 ORTHO05D005892 2.6e-08 65.5 168 30.4
C04p66890 Brassica napus HOM05D003704 ORTHO05D005892 4.4e-08 64.7 168 31.0
BolC4t28191H Brassica oleracea HOM05D003704 ORTHO05D005892 4.4e-08 64.7 168 31.0
Gohir.A08G225100 Gossypium hirsutum HOM05D003704 ORTHO05D005892 4.4e-08 64.7 168 31.0
Gohir.D08G245500 Gossypium hirsutum HOM05D003704 ORTHO05D005892 4.4e-08 64.7 168 31.0
Gorai.004G262000 Gossypium raimondii HOM05D003704 ORTHO05D005892 4.4e-08 64.7 168 31.0
SGA_v2.0_scaffold5G02930 Striga asiatica HOM05D003704 ORTHO05D005892 4.4e-08 64.7 168 29.8
Cfa026287 Carpinus fangiana HOM05D003704 ORTHO05D005892 5.7e-08 64.3 129 36.4
AUR62026830 Chenopodium quinoa HOM05D003704 ORTHO05D005892 5.7e-08 64.3 174 29.3
Ca_12375_v3 Cicer arietinum L. HOM05D003704 ORTHO05D005892 5.7e-08 64.3 132 33.3
Lsat_1_v5_gn_4_29820 Lactuca sativa HOM05D003704 ORTHO05D005892 5.7e-08 64.3 168 30.4
vmacro12686 Vaccinium macrocarpon HOM05D003704 ORTHO05D005892 5.7e-08 64.3 168 29.8
VMungo0251G0473 Vigna mungo HOM05D003704 ORTHO05D005892 5.7e-08 64.3 132 33.3
Actinidia21525 Actinidia chinensis HOM05D003704 ORTHO05D005892 7.4e-08 63.9 168 29.8
BcaB02g09152 Brassica carinata HOM05D003704 ORTHO05D005892 7.4e-08 63.9 168 30.4
BcaNung07214 Brassica carinata HOM05D003704 ORTHO05D005892 7.4e-08 63.9 168 30.4
C04p08870 Brassica napus HOM05D003704 ORTHO05D005892 7.4e-08 63.9 168 30.4
BolC4t22475H Brassica oleracea HOM05D003704 ORTHO05D005892 7.4e-08 63.9 168 30.4
Cc02_g29160 Coffea canephora HOM05D003704 ORTHO05D005892 7.4e-08 63.9 168 29.8
AUR62037223 Chenopodium quinoa HOM05D003704 ORTHO05D005892 9.7e-08 63.5 174 29.3
Dinv32045 Davidia involucrata HOM05D003704 ORTHO05D005892 9.7e-08 63.5 168 29.8
ECA234G1951 Erigeron canadensis HOM05D003704 ORTHO05D005892 9.7e-08 63.5 168 30.4
Rhsim01G0123500 Rhododendron simsii HOM05D003704 ORTHO05D005892 9.7e-08 63.5 164 29.3
Ah.12g065080 Amaranthus hybridus HOM05D003704 ORTHO05D005892 1.3e-07 63.2 174 29.3
A05p07400 Brassica napus HOM05D003704 ORTHO05D005892 1.3e-07 63.2 132 32.6
BraA05t19706Z Brassica rapa HOM05D003704 ORTHO05D005892 1.3e-07 63.2 132 32.6
Cre06.g300750 Chlamydomonas reinhardtii HOM05D003704 ORTHO05D005892 1.3e-07 63.2 174 29.3
FAN03G0678 Fragaria x ananassa HOM05D003704 ORTHO05D005892 1.3e-07 63.2 168 30.4
Glyma.20G000700 Glycine max HOM05D003704 ORTHO05D005892 1.3e-07 63.2 132 32.6
HanXRQChr17g0564051 Helianthus annuus HOM05D003704 ORTHO05D005892 1.3e-07 63.2 168 30.4
MBI05_g32454_MAGBIO Magnolia biondii HOM05D003704 ORTHO05D005892 1.3e-07 63.2 159 30.2
Hund15714 Selenicereus undatus HOM05D003704 ORTHO05D005892 1.3e-07 63.2 174 29.3
Zm00001eb018810 Zea mays HOM05D003704 ORTHO05D005892 1.3e-07 63.2 163 30.1
EL10Ac2g02849 Beta vulgaris HOM05D003704 ORTHO05D005892 1.7e-07 62.8 174 29.9
Cre01.g040379 Chlamydomonas reinhardtii HOM05D000188 ORTHO05D000362 1.7e-07 62.8 122 33.6
ClCG05G020780 Citrullus lanatus HOM05D003704 ORTHO05D005892 1.7e-07 62.8 168 30.4
MELO3C012449.2 Cucumis melo HOM05D003704 ORTHO05D005892 1.7e-07 62.8 174 29.9
DCAR_003239 Daucus carota HOM05D003704 ORTHO05D005892 1.7e-07 62.8 168 29.8
Migut.N01826 Erythranthe guttata HOM05D003704 ORTHO05D005892 1.7e-07 62.8 168 29.2
Migut.O00529 Erythranthe guttata HOM05D003704 ORTHO05D005892 1.7e-07 62.8 168 29.2
FvH4_7g02390 Fragaria vesca HOM05D003704 ORTHO05D005892 1.7e-07 62.8 168 30.4
FAN06G0794 Fragaria x ananassa HOM05D003704 ORTHO05D005892 1.7e-07 62.8 168 30.4
Phvul.003G001700 Phaseolus vulgaris HOM05D003704 ORTHO05D005892 1.7e-07 62.8 132 32.6
Potri.003G201200 Populus trichocarpa HOM05D003704 ORTHO05D005892 1.7e-07 62.8 168 30.4
RcHm_v2.0_Chr1g0319731 Rosa chinensis HOM05D003704 ORTHO05D005892 1.7e-07 62.8 168 30.4
Sabra03G0148800 Salix brachista HOM05D003704 ORTHO05D005892 1.7e-07 62.8 168 30.4
Sed0025295 Sechium edule HOM05D003704 ORTHO05D005892 1.7e-07 62.8 174 29.9
Sc11g0006670 Simmondsia chinensis HOM05D003704 ORTHO05D005892 1.7e-07 62.8 164 29.3
Sopen01g030440 Solanum pennellii HOM05D003704 ORTHO05D005892 1.7e-07 62.8 169 29.0
ATR0564G498 Amborella trichopoda HOM05D003704 ORTHO05D005892 2.2e-07 62.4 132 32.6
AT2G38770 Arabidopsis thaliana HOM05D003704 ORTHO05D005892 2.2e-07 62.4 168 29.8
CSS0035088 Camellia sinensis var. sinensis HOM05D003704 ORTHO05D005892 2.2e-07 62.4 164 29.3
CANSAT64G2305 Cannabis sativa HOM05D003704 ORTHO05D005892 2.2e-07 62.4 168 30.4
Carub.0004s2079 Capsella rubella HOM05D003704 ORTHO05D005892 2.2e-07 62.4 168 29.8
CAN.G1571.5 Capsicum annuum HOM05D003704 ORTHO05D005892 2.2e-07 62.4 168 29.2
Cfa010865 Carpinus fangiana HOM05D003704 ORTHO05D005892 2.2e-07 62.4 168 30.4
CiPaw.13G011100 Carya illinoinensis HOM05D003704 ORTHO05D005892 2.2e-07 62.4 168 30.4
Ciclev10030496m.g Citrus clementina HOM05D003704 ORTHO05D005892 2.2e-07 62.4 168 30.4
Haze_03082 Corylus avellana HOM05D003704 ORTHO05D005892 2.2e-07 62.4 168 30.4
Duzib128G1318 Durio zibethinus HOM05D003704 ORTHO05D005892 2.2e-07 62.4 168 30.4
Thhalv10016138m.g Eutrema salsugineum HOM05D003704 ORTHO05D005892 2.2e-07 62.4 168 29.8
Lj2g0008107 Lotus japonicus HOM05D003704 ORTHO05D005892 2.2e-07 62.4 132 32.6
MD02G1293400 Malus domestica HOM05D003704 ORTHO05D005892 2.2e-07 62.4 168 30.4
MD07G1033300 Malus domestica HOM05D003704 ORTHO05D005892 2.2e-07 62.4 168 30.4
Nitab4.5_0000316g0110 Nicotiana tabacum HOM05D003704 ORTHO05D005892 2.2e-07 62.4 168 29.2
Nitab4.5_0001888g0060 Nicotiana tabacum HOM05D003704 ORTHO05D005892 2.2e-07 62.4 168 29.2
Os03g0387000 Oryza sativa ssp. japonica HOM05D003704 ORTHO05D005892 2.2e-07 62.4 163 31.3
Prupe.2G030100 Prunus persica HOM05D003704 ORTHO05D005892 2.2e-07 62.4 168 30.4
QL04p013824 Quercus lobata HOM05D003704 ORTHO05D005892 2.2e-07 62.4 168 30.4
Sp4g21160 Schrenkiella parvula HOM05D003704 ORTHO05D005892 2.2e-07 62.4 168 29.8
SEGI_35696 Sequoiadendron giganteum HOM05D003704 ORTHO05D005892 2.2e-07 62.4 163 30.1
Thecc.05G198600 Theobroma cacao HOM05D003704 ORTHO05D005892 2.2e-07 62.4 168 30.4
arahy.Tifrunner.gnm1.ann1.75MG08 Arachis hypogaea HOM05D003704 ORTHO05D005892 2.8e-07 62.0 132 32.6
arahy.Tifrunner.gnm1.ann1.RZB3JM Arachis hypogaea HOM05D003704 ORTHO05D005892 2.8e-07 62.0 132 32.6
Haze_26602 Corylus avellana HOM05D000188 ORTHO05D003976 2.8e-07 62.0 99 40.4
CsaV3_5G036520 Cucumis sativus L. HOM05D003704 ORTHO05D005892 2.8e-07 62.0 174 29.9
Lalb_Chr17g0337761 Lupinus albus HOM05D003704 ORTHO05D005892 2.8e-07 62.0 132 32.6
Peaxi162Scf00309g00333 Petunia axillaris HOM05D003704 ORTHO05D005892 2.8e-07 62.0 132 31.8
THA.LOC104801743 Tarenaya hassleriana HOM05D003704 ORTHO05D005892 2.8e-07 62.0 168 30.4
Atru.chr11.2463 Acer truncatum HOM05D003704 ORTHO05D005892 3.7e-07 61.6 169 29.6
Atru.chr11.2491 Acer truncatum HOM05D003704 ORTHO05D005892 3.7e-07 61.6 169 29.6
CARHR133480 Cardamine hirsuta HOM05D003704 ORTHO05D005892 3.7e-07 61.6 132 31.8
Lj2A1006G35 Lonicera japonica HOM05D003704 ORTHO05D005892 3.7e-07 61.6 164 28.7
Solyc01g068480.4 Solanum lycopersicum HOM05D003704 ORTHO05D005892 3.7e-07 61.6 164 28.7
HPP92_001562 Vanilla planifolia HOM05D003704 ORTHO05D005892 3.7e-07 61.6 164 29.3
AL4G36070 Arabidopsis lyrata HOM05D003704 ORTHO05D005892 4.8e-07 61.2 168 29.2
Psat6g100680 Pisum sativum HOM05D003704 ORTHO05D005892 4.8e-07 61.2 127 32.3
TWI15G0657 Tripterygium wilfordii HOM05D003704 ORTHO05D005892 4.8e-07 61.2 132 32.6
FAN01G0955 Fragaria x ananassa HOM05D003704 ORTHO05D005892 6.3e-07 60.8 163 30.1
Medtr1g038815 Medicago truncatula HOM05D003704 ORTHO05D005892 6.3e-07 60.8 127 32.3
TPR.G35533 Trifolium pratense HOM05D003704 ORTHO05D005892 6.3e-07 60.8 127 32.3
Aa31LG5G20910 Aethionema arabicum HOM05D003704 ORTHO05D005892 8.2e-07 60.5 168 29.2
Eucgr.G03254 Eucalyptus grandis HOM05D003704 ORTHO05D005892 8.2e-07 60.5 127 32.3
Mapoly0170s0020 Marchantia polymorpha HOM05D003704 ORTHO05D005892 8.2e-07 60.5 127 33.1
Pp3c21_9820 Physcomitrium patens HOM05D003704 ORTHO05D005892 8.2e-07 60.5 169 30.2
MBI05_g32455_MAGBIO Magnolia biondii HOM05D003704 ORTHO05D005892 1.1e-06 60.1 163 29.4
PSO541G6018 Papaver somniferum HOM05D003704 ORTHO05D005892 1.4e-06 59.7 163 29.4
PSO781G0253 Papaver somniferum HOM05D003704 ORTHO05D005892 1.4e-06 59.7 163 29.4
TAR628G1325 Trochodendron aralioides HOM05D003704 ORTHO05D005892 1.4e-06 59.7 163 29.4
BraA04t18425Z Brassica rapa HOM05D003704 ORTHO05D005892 1.8e-06 59.3 153 30.7
Manes.04G164800 Manihot esculenta HOM05D003704 ORTHO05D005892 1.8e-06 59.3 228 28.1
Oeu003918.1 Olea europaea HOM05D003704 ORTHO05D005892 1.8e-06 59.3 163 28.8
AagrBONN_evm.TU.Sc2ySwM_228.2967 Anthoceros agrestis HOM05D000188 ORTHO05D003976 2.4e-06 58.9 123 30.9
Os11g0649000 Oryza sativa ssp. japonica HOM05D000188 ORTHO05D000362 2.4e-06 58.9 140 30.7
Nn5g29073 Nelumbo nucifera HOM05D003704 ORTHO05D005892 3.1e-06 58.5 163 30.1
Cre03.g150350 Chlamydomonas reinhardtii HOM05D000188 ORTHO05D000362 4.1e-06 58.2 126 33.3
Haze_26754 Corylus avellana HOM05D003704 ORTHO05D005892 4.1e-06 58.2 147 32.0
SHI03978 Sapria himalayana HOM05D006558 ORTHO05D005892 4.1e-06 58.2 127 30.7
DCAR_010524 Daucus carota HOM05D000188 ORTHO05D008781 5.3e-06 57.8 126 34.9
PGR142G1874 Punica granatum HOM05D003704 ORTHO05D005892 5.3e-06 57.8 163 29.4
VMungo0251G1433 Vigna mungo HOM05D000188 ORTHO05D005820 5.3e-06 57.8 240 25.0
Carub.0007s3175 Capsella rubella HOM05D000188 ORTHO05D008781 7.0e-06 57.4 126 33.3
CBR_g49869 Chara braunii HOM05D003704 ORTHO05D005892 7.0e-06 57.4 155 29.0
Glyma.02G001000 Glycine max HOM05D000188 ORTHO05D008781 7.0e-06 57.4 129 31.8
A04p10060 Brassica napus HOM05D000188 ORTHO05D008781 9.1e-06 57.0 126 33.3
C04p43530 Brassica napus HOM05D000188 ORTHO05D008781 9.1e-06 57.0 126 33.3
BolC4t25933H Brassica oleracea HOM05D000188 ORTHO05D008781 9.1e-06 57.0 126 33.3
BraA04t16668Z Brassica rapa HOM05D000188 ORTHO05D008781 9.1e-06 57.0 126 33.3
PSO675G8488 Papaver somniferum HOM05D000188 ORTHO05D008781 9.1e-06 57.0 126 35.7
VMungo0720G2754 Vigna mungo HOM05D000188 ORTHO05D008781 9.1e-06 57.0 127 31.5


User provided reference genes

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