Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_04619 Sequoiadendron giganteum HOM05D005087 ORTHO05D006427 0.0e+00 1212.2 633 100.0
SEGI_29436 Sequoiadendron giganteum HOM05D005087 ORTHO05D006427 4.0e-122 443.0 242 88.8
CiPaw.14G002700 Carya illinoinensis HOM05D005087 ORTHO05D006427 2.0e-102 377.5 239 77.8
Ciclev10030582m.g Citrus clementina HOM05D005087 ORTHO05D006427 1.1e-100 371.7 234 76.9
Cfa022636 Carpinus fangiana HOM05D005087 ORTHO05D006427 1.5e-100 371.3 239 75.7
THA.LOC104819098 Tarenaya hassleriana HOM05D005087 ORTHO05D006427 5.6e-100 369.4 240 74.6
Haze_03133 Corylus avellana HOM05D005087 ORTHO05D006427 7.3e-100 369.0 234 76.9
Haze_03136 Corylus avellana HOM05D005087 ORTHO05D006427 7.3e-100 369.0 234 76.9
QL04p009808 Quercus lobata HOM05D005087 ORTHO05D006427 1.2e-99 368.2 234 76.5
Eucgr.G03334 Eucalyptus grandis HOM05D005087 ORTHO05D006427 2.8e-99 367.1 234 76.9
Manes.10G136400 Manihot esculenta HOM05D005087 ORTHO05D006427 4.7e-99 366.3 234 75.2
SalBow5G0870 Salvia bowleyana HOM05D005087 ORTHO05D006427 6.1e-99 365.9 246 73.2
SalBow5G2001 Salvia bowleyana HOM05D005087 ORTHO05D006427 6.1e-99 365.9 246 73.2
TAR623G1255 Trochodendron aralioides HOM05D005087 ORTHO05D006427 6.1e-99 365.9 233 76.4
Cpa.g.sc125.40 Carica papaya HOM05D005087 ORTHO05D006427 1.0e-98 365.2 263 68.8
Prupe.2G022000 Prunus persica HOM05D005087 ORTHO05D006427 1.8e-98 364.4 233 75.1
CANSAT80G0443 Cannabis sativa HOM05D005087 ORTHO05D006427 8.9e-98 362.1 234 74.4
CsaV3_7G030750 Cucumis sativus L. HOM05D005087 ORTHO05D006427 8.9e-98 362.1 233 75.1
Migut.B01270 Erythranthe guttata HOM05D005087 ORTHO05D006427 8.9e-98 362.1 233 75.5
Thecc.05G218700 Theobroma cacao HOM05D005087 ORTHO05D006427 8.9e-98 362.1 233 75.5
Duzib177G0717 Durio zibethinus HOM05D005087 ORTHO05D006427 1.2e-97 361.7 246 71.1
Lalb_Chr04g0263871 Lupinus albus HOM05D005087 ORTHO05D006427 1.2e-97 361.7 234 73.1
Lj9C640G8 Lonicera japonica HOM05D005087 ORTHO05D006427 1.5e-97 361.3 246 72.0
ECA248G2604 Erigeron canadensis HOM05D005087 ORTHO05D006427 2.6e-97 360.5 233 74.7
Gohir.D13G161900 Gossypium hirsutum HOM05D005087 ORTHO05D006427 3.4e-97 360.1 240 72.5
Gorai.013G183900 Gossypium raimondii HOM05D005087 ORTHO05D006427 3.4e-97 360.1 240 72.5
Hma1.2p1_0685F.1_g203150 Hydrangea macrophylla HOM05D005087 ORTHO05D006427 3.4e-97 360.1 239 74.5
MELO3C023581.2 Cucumis melo HOM05D005087 ORTHO05D006427 4.4e-97 359.8 233 74.7
FvH4_7g01640 Fragaria vesca HOM05D005087 ORTHO05D006427 4.4e-97 359.8 240 71.2
Peaxi162Scf00694g00319 Petunia axillaris HOM05D005087 ORTHO05D006427 4.4e-97 359.8 233 75.1
Potri.001G262600 Populus trichocarpa HOM05D005087 ORTHO05D006427 5.7e-97 359.4 239 73.6
Nn7g36293 Nelumbo nucifera HOM05D005087 ORTHO05D006427 7.5e-97 359.0 233 74.2
Atru.chr11.2578 Acer truncatum HOM05D005087 ORTHO05D006427 1.3e-96 358.2 234 74.4
Cc02_g28540 Coffea canephora HOM05D005087 ORTHO05D006427 1.3e-96 358.2 233 73.8
Pp3c24_4940 Physcomitrium patens HOM05D005087 ORTHO05D006427 1.3e-96 358.2 245 70.2
GSVIVG01032195001 Vitis vinifera HOM05D005087 ORTHO05D006427 1.3e-96 358.2 239 72.0
FAN03G0563 Fragaria x ananassa HOM05D005087 ORTHO05D006427 2.2e-96 357.5 240 70.8
RcHm_v2.0_Chr1g0317911 Rosa chinensis HOM05D005087 ORTHO05D006427 2.2e-96 357.5 240 71.2
Gohir.A13G157100 Gossypium hirsutum HOM05D005087 ORTHO05D006427 2.9e-96 357.1 240 72.1
Sed0026614 Sechium edule HOM05D005087 ORTHO05D006427 2.9e-96 357.1 233 74.7
Sopen01g034670 Solanum pennellii HOM05D005087 ORTHO05D006427 2.9e-96 357.1 233 74.7
SGA_v2.0_scaffold119G32758 Striga asiatica HOM05D005087 ORTHO05D006427 2.9e-96 357.1 232 75.0
Sp6g28190 Schrenkiella parvula HOM05D005087 ORTHO05D006427 3.7e-96 356.7 243 70.0
PGR031G1517 Punica granatum HOM05D005087 ORTHO05D006427 4.9e-96 356.3 230 76.1
Solyc01g087720.4 Solanum lycopersicum HOM05D005087 ORTHO05D006427 6.4e-96 355.9 233 74.2
MSTRG.17010 Avicennia marina HOM05D005087 ORTHO05D006427 8.3e-96 355.5 233 74.2
CARHR197390 Cardamine hirsuta HOM05D005087 ORTHO05D006427 8.3e-96 355.5 243 70.0
Thhalv10012535m.g Eutrema salsugineum HOM05D005087 ORTHO05D006427 8.3e-96 355.5 236 72.0
AL6G26800 Arabidopsis lyrata HOM05D005087 ORTHO05D006427 1.4e-95 354.8 243 70.4
CSS0029256 Camellia sinensis var. sinensis HOM05D005087 ORTHO05D006427 1.4e-95 354.8 438 47.9
Ca_14518_v3 Cicer arietinum L. HOM05D005087 ORTHO05D006427 1.4e-95 354.8 239 69.0
VMungo0251G2588 Vigna mungo HOM05D005087 ORTHO05D006427 2.4e-95 354.0 234 72.2
Medtr4g115050 Medicago truncatula HOM05D005087 ORTHO05D006427 3.2e-95 353.6 239 69.9
BcaB01g05014 Brassica carinata HOM05D005087 ORTHO05D006427 4.1e-95 353.2 236 71.2
Phvul.002G285500 Phaseolus vulgaris HOM05D005087 ORTHO05D006427 4.1e-95 353.2 234 71.8
AT5G15920 Arabidopsis thaliana HOM05D005087 ORTHO05D006427 5.4e-95 352.8 248 69.0
EL10Ac2g04365 Beta vulgaris HOM05D005087 ORTHO05D006427 5.4e-95 352.8 246 71.1
Hund09863 Selenicereus undatus HOM05D005087 ORTHO05D006427 5.4e-95 352.8 246 70.3
A03p07470 Brassica napus HOM05D005087 ORTHO05D006427 7.0e-95 352.4 236 71.6
C03p08670 Brassica napus HOM05D005087 ORTHO05D006427 7.0e-95 352.4 236 71.6
BolC3t13367H Brassica oleracea HOM05D005087 ORTHO05D006427 7.0e-95 352.4 236 71.6
BraA03t10076Z Brassica rapa HOM05D005087 ORTHO05D006427 7.0e-95 352.4 236 71.6
Carub.0006s1411 Capsella rubella HOM05D005087 ORTHO05D006427 9.2e-95 352.1 243 70.0
Medtr3g033470 Medicago truncatula HOM05D005087 ORTHO05D006427 9.2e-95 352.1 239 69.5
TWI09G0473 Tripterygium wilfordii HOM05D005087 ORTHO05D006427 9.2e-95 352.1 233 73.4
Rhsim01G0127000 Rhododendron simsii HOM05D005087 ORTHO05D006427 1.2e-94 351.7 238 72.7
PSO210G7144 Papaver somniferum HOM05D005087 ORTHO05D006427 2.7e-94 350.5 236 71.2
FAN06G3789 Fragaria x ananassa HOM05D005087 ORTHO05D006427 3.5e-94 350.1 252 67.9
TPR.G14572 Trifolium pratense HOM05D005087 ORTHO05D006427 4.6e-94 349.7 239 68.6
FAN10G1149 Fragaria x ananassa HOM05D005087 ORTHO05D006427 5.9e-94 349.4 252 67.9
Medtr5g036330 Medicago truncatula HOM05D005087 ORTHO05D006427 5.9e-94 349.4 240 68.8
Aqoxy1G00327 Aquilegia oxysepala HOM05D005087 ORTHO05D006427 7.8e-94 349.0 233 72.5
HanXRQChr01g0007751 Helianthus annuus HOM05D005087 ORTHO05D006427 7.8e-94 349.0 381 52.2
Lj3g0015731 Lotus japonicus HOM05D005087 ORTHO05D006427 7.8e-94 349.0 239 69.9
Os05g0596600 Oryza sativa ssp. japonica HOM05D005087 ORTHO05D006427 1.0e-93 348.6 233 70.8
PSO339G3397 Papaver somniferum HOM05D005087 ORTHO05D006427 1.3e-93 348.2 233 71.2
Lsat_1_v5_gn_1_103161 Lactuca sativa HOM05D005087 ORTHO05D006427 5.0e-93 346.3 249 69.9
Glyma.20G198300 Glycine max HOM05D005087 ORTHO05D006427 4.3e-92 343.2 234 70.1
Lj3g0013327 Lotus japonicus HOM05D005087 ORTHO05D006427 1.2e-91 341.7 398 48.5
MD07G1021900 Malus domestica HOM05D005087 ORTHO05D006427 1.2e-91 341.7 234 71.8
CDE09G1121 Ceratophyllum demersum HOM05D005087 ORTHO05D006427 2.1e-91 340.9 233 70.4
SMO143G0265 Selaginella moellendorffii HOM05D005087 ORTHO05D006427 2.1e-91 340.9 464 45.7
ClCG09G004390 Citrullus lanatus HOM05D005087 ORTHO05D006427 1.4e-90 338.2 233 72.5
Dinv09311 Davidia involucrata HOM05D005087 ORTHO05D006427 1.8e-90 337.8 222 74.8
Mapoly0007s0066 Marchantia polymorpha HOM05D005087 ORTHO05D006427 9.8e-89 332.0 379 49.9
Aa31LG11G13680 Aethionema arabicum HOM05D005087 ORTHO05D006427 2.0e-86 324.3 261 63.2
Oeu049480.1 Olea europaea HOM05D005087 ORTHO05D006427 1.5e-84 318.2 519 40.3
Psat6g018320 Pisum sativum HOM05D005087 ORTHO05D006427 1.2e-83 315.1 239 64.4
Actinidia21540 Actinidia chinensis HOM05D005087 ORTHO05D006427 5.4e-79 299.7 173 82.1
CBR_g88572 Chara braunii HOM05D005087 ORTHO05D000002 9.2e-79 298.9 397 44.8
Medtr5g036370 Medicago truncatula HOM05D005087 ORTHO05D006427 3.9e-77 293.5 199 70.9
Lju99A9T21 Lonicera japonica HOM05D005087 ORTHO05D006427 4.3e-76 290.0 234 65.0
DCAR_029700 Daucus carota HOM05D005087 ORTHO05D006427 2.1e-75 287.7 216 65.3
arahy.Tifrunner.gnm1.ann1.1A5L99 Arachis hypogaea HOM05D005087 ORTHO05D006427 2.3e-74 284.3 210 65.7
SHI04084 Sapria himalayana HOM05D005087 ORTHO05D006427 1.5e-73 281.6 221 64.7
PSO384G1020 Papaver somniferum HOM05D005087 ORTHO05D006427 3.8e-72 276.9 163 81.0
arahy.Tifrunner.gnm1.ann1.JJ1LEU Arachis hypogaea HOM05D005087 ORTHO05D006427 8.4e-72 275.8 223 62.3
AUR62009415 Chenopodium quinoa HOM05D005087 ORTHO05D006427 7.8e-70 269.2 194 70.6
AUR62023092 Chenopodium quinoa HOM05D005087 ORTHO05D006427 6.6e-69 266.2 188 71.8
SGA_v2.0_scaffold42G16189 Striga asiatica HOM05D005087 ORTHO05D006427 7.6e-65 252.7 233 57.1
ATR0626G229 Amborella trichopoda HOM05D005087 ORTHO05D006427 8.7e-61 239.2 170 70.6
Sabra16G0161000 Salix brachista HOM05D005087 ORTHO05D006427 8.1e-59 232.6 165 69.7
PRCOL_00002930 Prasinoderma coloniale HOM05D005087 ORTHO05D006427 1.3e-51 208.8 208 49.0
Cre10.g440200 Chlamydomonas reinhardtii HOM05D005087 ORTHO05D006427 4.8e-51 206.8 226 48.2
Nitab4.5_0002388g0090 Nicotiana tabacum HOM05D005087 ORTHO05D006427 2.2e-48 198.0 105 89.5
MCO04G035 Micromonas commoda HOM05D005087 ORTHO05D006427 9.3e-47 192.6 428 31.3
Cre10.g440300 Chlamydomonas reinhardtii HOM05D005087 ORTHO05D006427 2.5e-39 167.9 206 44.7
Sc10g0000340 Simmondsia chinensis HOM05D005087 ORTHO05D006427 3.2e-39 167.5 134 63.4
SEGI_00018 Sequoiadendron giganteum HOM05D009756 ORTHO05D011582 1.3e-37 162.2 243 39.9
Nitab4.5_0002388g0080 Nicotiana tabacum HOM05D005087 ORTHO05D006427 4.3e-36 157.1 118 65.3
SEGI_20472 Sequoiadendron giganteum HOM05D009756 ORTHO05D011582 9.7e-36 156.0 217 40.1
Nitab4.5_0000707g0060 Nicotiana tabacum HOM05D005087 ORTHO05D006427 2.1e-35 154.8 87 79.3
SEGI_15451 Sequoiadendron giganteum HOM05D009756 ORTHO05D011582 1.8e-34 151.8 253 38.3
SEGI_00881 Sequoiadendron giganteum HOM05D009756 ORTHO05D011582 2.4e-34 151.4 232 44.4
Medtr5g036300 Medicago truncatula HOM05D005087 ORTHO05D006427 6.5e-32 143.3 122 64.8
SEGI_14988 Sequoiadendron giganteum HOM05D009756 ORTHO05D011582 1.4e-31 142.1 257 45.1
SEGI_05073 Sequoiadendron giganteum HOM05D009756 ORTHO05D011582 3.2e-31 141.0 221 42.5
SEGI_13450 Sequoiadendron giganteum HOM05D009756 ORTHO05D011582 4.6e-30 137.1 221 49.3
Nitab4.5_0000707g0070 Nicotiana tabacum HOM05D005087 ORTHO05D006427 1.0e-29 136.0 117 59.8
SEGI_07590 Sequoiadendron giganteum HOM05D009756 ORTHO05D011582 1.0e-29 136.0 229 47.2
vmacro17464 Vaccinium macrocarpon HOM05D005087 ORTHO05D006427 6.7e-29 133.3 124 54.0
SEGI_19657 Sequoiadendron giganteum HOM05D009756 ORTHO05D011582 2.4e-26 124.8 204 45.6
Cfa027028 Carpinus fangiana HOM05D005087 ORTHO05D006427 6.5e-24 116.7 392 26.3
SEGI_30750 Sequoiadendron giganteum HOM05D009756 ORTHO05D011582 8.5e-24 116.3 204 46.6
unitig_22.g5432 Utricularia gibba HOM05D005087 ORTHO05D006427 8.5e-24 116.3 96 60.4
AagrBONN_evm.TU.Sc2ySwM_344.2054 Anthoceros agrestis HOM05D005087 ORTHO05D006427 1.2e-22 112.5 99 55.6
SEGI_26003 Sequoiadendron giganteum HOM05D009756 ORTHO05D011582 3.6e-22 110.9 149 42.3
SEGI_19669 Sequoiadendron giganteum HOM05D009756 ORTHO05D011582 2.3e-21 108.2 182 47.3
SEGI_00127 Sequoiadendron giganteum HOM05D009756 ORTHO05D011582 3.0e-21 107.8 202 35.1
SEGI_31799 Sequoiadendron giganteum HOM05D009756 ORTHO05D011582 3.0e-21 107.8 202 35.1
SEGI_41568 Sequoiadendron giganteum HOM05D009756 ORTHO05D011582 6.7e-21 106.7 97 54.6
SEGI_11384 Sequoiadendron giganteum HOM05D009756 ORTHO05D011582 4.4e-20 104.0 83 63.9
SEGI_08957 Sequoiadendron giganteum HOM05D000014 ORTHO05D000093 6.9e-18 96.7 97 51.5
FAN01G1492 Fragaria x ananassa HOM05D005087 ORTHO05D006427 5.2e-13 80.5 58 60.3
SEGI_39433 Sequoiadendron giganteum HOM05D009756 ORTHO05D011582 2.0e-12 78.6 191 30.9
SEGI_24726 Sequoiadendron giganteum HOM05D009756 ORTHO05D000093 1.4e-10 72.4 73 43.8
SEGI_05499 Sequoiadendron giganteum HOM05D009756 ORTHO05D011582 9.1e-10 69.7 82 41.5
HPP92_016894 Vanilla planifolia HOM05D005087 ORTHO05D006427 9.1e-10 69.7 65 47.7
PSO384G4905 Papaver somniferum HOM05D000635 ORTHO05D000488 1.6e-09 68.9 68 47.1
Psat7g002800 Pisum sativum HOM05D005087 ORTHO05D006427 2.5e-07 61.6 86 44.2
MBI11_g23279_MAGBIO Magnolia biondii HOM05D005087 ORTHO05D006427 7.2e-07 60.1 34 70.6
SEGI_14082 Sequoiadendron giganteum HOM05D009756 ORTHO05D386406 2.7e-06 58.2 57 50.9
TPR.G19974 Trifolium pratense HOM05D005087 ORTHO05D006427 6.1e-06 57.0 125 31.2
Actinidia21541 Actinidia chinensis HOM05D005087 ORTHO05D006427 8.0e-06 56.6 45 57.8
Medtr4g061050 Medicago truncatula HOM05D004178 ORTHO05D005204 8.0e-06 56.6 184 25.5
SEGI_25074 Sequoiadendron giganteum HOM05D009756 ORTHO05D011582 8.0e-06 56.6 152 43.4


User provided reference genes

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