Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_03959 Sequoiadendron giganteum HOM05D005045 ORTHO05D006386 0.0e+00 1430.6 759 100.0
ATR0561G148 Amborella trichopoda HOM05D005045 ORTHO05D006386 2.5e-296 1021.9 759 70.1
Cpa.g.sc157.48 Carica papaya HOM05D005045 ORTHO05D006386 2.3e-278 962.2 761 66.5
Cfa014961 Carpinus fangiana HOM05D005045 ORTHO05D006386 1.2e-274 949.9 761 65.8
CiPaw.01G116800 Carya illinoinensis HOM05D005045 ORTHO05D006386 3.5e-274 948.3 761 65.6
Potri.001G320300 Populus trichocarpa HOM05D005045 ORTHO05D006386 1.6e-271 939.5 761 65.6
TWI53G1845 Tripterygium wilfordii HOM05D005045 ORTHO05D006386 1.6e-271 939.5 761 65.6
HPP92_024209 Vanilla planifolia HOM05D005045 ORTHO05D006386 8.0e-271 937.2 761 64.3
CAN.G765.38 Capsicum annuum HOM05D005045 ORTHO05D006386 8.3e-268 927.2 761 64.4
PSO017G0058 Papaver somniferum HOM05D005045 ORTHO05D006386 2.0e-266 922.5 761 63.9
Prupe.1G165000 Prunus persica HOM05D005045 ORTHO05D006386 3.5e-266 921.8 761 63.9
THA.LOC104826172 Tarenaya hassleriana HOM05D005045 ORTHO05D006386 7.8e-266 920.6 761 64.3
Dinv38168 Davidia involucrata HOM05D005045 ORTHO05D006386 1.7e-265 919.5 761 64.3
Aqoxy2G03932 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 1.1e-264 916.8 761 63.5
Sed0026716 Sechium edule HOM05D005045 ORTHO05D006386 7.3e-264 914.1 761 63.9
Actinidia28996 Actinidia chinensis HOM05D005045 ORTHO05D006386 6.8e-262 907.5 761 63.6
Peaxi162Scf00423g00410 Petunia axillaris HOM05D005045 ORTHO05D006386 2.9e-260 902.1 761 62.8
Glyma.18G002400 Glycine max HOM05D005045 ORTHO05D006386 1.1e-259 900.2 761 63.5
Ciclev10004166m.g Citrus clementina HOM05D005045 ORTHO05D006386 2.0e-258 896.0 761 62.9
Manes.03G144200 Manihot esculenta HOM05D005045 ORTHO05D006386 6.0e-258 894.4 761 62.8
Sabra16G0202900 Salix brachista HOM05D005045 ORTHO05D006386 5.0e-257 891.3 803 61.1
Lalb_Chr11g0075871 Lupinus albus HOM05D005045 ORTHO05D006386 8.6e-257 890.6 761 62.5
MELO3C006292.2 Cucumis melo HOM05D005045 ORTHO05D006386 1.9e-256 889.4 761 63.2
CSS0020032 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 3.6e-255 885.2 761 61.6
Atru.chr4.1578 Acer truncatum HOM05D005045 ORTHO05D006386 4.0e-254 881.7 761 63.5
Nn3g20083 Nelumbo nucifera HOM05D005045 ORTHO05D006386 4.0e-254 881.7 769 61.1
Sopen05g032270 Solanum pennellii HOM05D005045 ORTHO05D006386 1.2e-253 880.2 761 61.6
Phvul.001G266800 Phaseolus vulgaris HOM05D005045 ORTHO05D006386 3.7e-252 875.2 761 61.4
VMungo1383G3533 Vigna mungo HOM05D005045 ORTHO05D006386 4.9e-252 874.8 761 61.2
MD05G1230300 Malus domestica HOM05D005045 ORTHO05D006386 3.5e-250 868.6 761 59.4
Carub.0004s1329 Capsella rubella HOM05D005045 ORTHO05D006386 4.6e-250 868.2 761 60.8
ClCG05G003110 Citrullus lanatus HOM05D005045 ORTHO05D006386 7.8e-250 867.5 809 60.1
Solyc05g053800.3 Solanum lycopersicum HOM05D005045 ORTHO05D006386 1.7e-249 866.3 761 61.0
Lj6g0005100 Lotus japonicus HOM05D005045 ORTHO05D006386 3.9e-249 865.1 764 60.7
CDE02G0777 Ceratophyllum demersum HOM05D005045 ORTHO05D006386 2.5e-248 862.4 765 62.0
Thhalv10016151m.g Eutrema salsugineum HOM05D005045 ORTHO05D006386 4.3e-248 861.7 761 60.3
Migut.G00767 Erythranthe guttata HOM05D005045 ORTHO05D006386 2.1e-247 859.4 761 60.3
Nitab4.5_0002260g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 1.4e-246 856.7 761 61.0
FvH4_4g13300 Fragaria vesca HOM05D005045 ORTHO05D006386 2.3e-246 855.9 761 59.4
Zm00001eb181120 Zea mays HOM05D005045 ORTHO05D006386 2.3e-246 855.9 761 59.7
Sp4g14350 Schrenkiella parvula HOM05D005045 ORTHO05D006386 9.9e-245 850.5 761 60.7
RcHm_v2.0_Chr4g0413591 Rosa chinensis HOM05D005045 ORTHO05D006386 4.9e-244 848.2 765 59.7
FAN12G2321 Fragaria x ananassa HOM05D005045 ORTHO05D006386 3.2e-243 845.5 776 58.1
CsaV3_3G010730 Cucumis sativus L. HOM05D005045 ORTHO05D006386 4.1e-243 845.1 761 60.7
Aa31LG5G5040 Aethionema arabicum HOM05D005045 ORTHO05D006386 2.7e-242 842.4 761 60.2
BcaB01g04004 Brassica carinata HOM05D005045 ORTHO05D006386 7.8e-242 840.9 761 60.2
A03p17990 Brassica napus HOM05D005045 ORTHO05D006386 2.5e-240 835.9 778 59.3
PGR142G0016 Punica granatum HOM05D005045 ORTHO05D006386 2.5e-240 835.9 761 60.1
BraA03t11060Z Brassica rapa HOM05D005045 ORTHO05D006386 2.1e-239 832.8 782 58.8
HanXRQChr02g0058481 Helianthus annuus HOM05D005045 ORTHO05D006386 2.1e-239 832.8 761 59.3
C03p21030 Brassica napus HOM05D005045 ORTHO05D006386 1.4e-238 830.1 767 59.6
BolC3t14484H Brassica oleracea HOM05D005045 ORTHO05D006386 1.8e-238 829.7 767 59.6
Lsat_1_v5_gn_6_59140 Lactuca sativa HOM05D005045 ORTHO05D006386 4.0e-238 828.6 761 58.6
Psat5g100040 Pisum sativum HOM05D005045 ORTHO05D006386 8.9e-238 827.4 761 58.7
Gohir.D02G022400 Gossypium hirsutum HOM05D005045 ORTHO05D006386 9.9e-237 823.9 761 58.6
Gorai.005G027800 Gossypium raimondii HOM05D005045 ORTHO05D006386 9.9e-237 823.9 761 58.6
AL4G27320 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 2.2e-236 822.8 761 58.9
Gohir.A02G019100 Gossypium hirsutum HOM05D005045 ORTHO05D006386 3.8e-236 822.0 761 58.3
Cc03_g08470 Coffea canephora HOM05D005045 ORTHO05D006386 6.4e-236 821.2 762 58.1
TAR362G1154 Trochodendron aralioides HOM05D005045 ORTHO05D006386 1.9e-235 819.7 669 66.2
Thecc.04G195000 Theobroma cacao HOM05D005045 ORTHO05D006386 5.4e-235 818.1 761 59.0
AT2G31970 Arabidopsis thaliana HOM05D005045 ORTHO05D006386 7.1e-235 817.8 761 58.7
Medtr3g084300 Medicago truncatula HOM05D005045 ORTHO05D006386 3.9e-233 812.0 761 59.0
FAN07G1455 Fragaria x ananassa HOM05D005045 ORTHO05D006386 5.1e-233 811.6 759 57.4
EL10Ac3g07454 Beta vulgaris HOM05D005045 ORTHO05D006386 6.6e-233 811.2 761 58.1
ECA233G4939 Erigeron canadensis HOM05D005045 ORTHO05D006386 1.1e-230 803.9 762 57.7
Haze_11653 Corylus avellana HOM05D005045 ORTHO05D006386 5.2e-230 801.6 945 50.7
vmacro15566 Vaccinium macrocarpon HOM05D005045 ORTHO05D006386 9.9e-229 797.3 814 55.5
Mapoly0027s0186 Marchantia polymorpha HOM05D005045 ORTHO05D006386 8.4e-228 794.3 761 57.2
MSTRG.9796 Avicennia marina HOM05D005045 ORTHO05D006386 4.6e-226 788.5 761 56.8
SGA_v2.0_scaffold27G11679 Striga asiatica HOM05D005045 ORTHO05D006386 1.1e-224 783.9 761 56.9
FAN22G0494 Fragaria x ananassa HOM05D005045 ORTHO05D006386 2.6e-221 772.7 814 53.4
SalBow8G0828 Salvia bowleyana HOM05D005045 ORTHO05D006386 1.9e-219 766.5 761 55.6
TPR.G25379 Trifolium pratense HOM05D005045 ORTHO05D006386 3.9e-217 758.8 781 54.9
Rhsim02G0061900 Rhododendron simsii HOM05D005045 ORTHO05D006386 2.1e-215 753.1 691 58.8
arahy.Tifrunner.gnm1.ann1.RK3EBX Arachis hypogaea HOM05D005045 ORTHO05D006386 4.8e-215 751.9 631 64.3
arahy.Tifrunner.gnm1.ann1.2Y4S4L Arachis hypogaea HOM05D005045 ORTHO05D006386 1.8e-214 750.0 631 64.2
Duzib151G0179 Durio zibethinus HOM05D005045 ORTHO05D006386 9.9e-213 744.2 761 54.9
Eucgr.H00025 Eucalyptus grandis HOM05D005045 ORTHO05D006386 6.0e-210 734.9 654 60.2
MBI07_g27366_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 1.3e-209 733.8 558 70.1
DCAR_005488 Daucus carota HOM05D005045 ORTHO05D006386 9.0e-206 721.1 761 53.5
Sc19g0007360 Simmondsia chinensis HOM05D005045 ORTHO05D006386 2.0e-205 719.9 654 58.7
Pp3c10_3760 Physcomitrium patens HOM05D005045 ORTHO05D006386 4.6e-202 708.8 761 52.4
AagrBONN_evm.TU.Sc2ySwM_368.995 Anthoceros agrestis HOM05D002013 ORTHO05D002293 3.9e-193 679.1 761 49.8
Ca_16406_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 3.9e-193 679.1 631 60.4
SHI26063 Sapria himalayana HOM05D005045 ORTHO05D006386 2.8e-175 619.8 733 50.5
SMO356G0717 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 1.2e-173 614.4 754 47.6
Lj6C381G5 Lonicera japonica HOM05D005045 ORTHO05D006386 4.7e-162 575.9 594 56.2
Nitab4.5_0003358g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 4.3e-147 526.2 641 48.5
SMO217G0009 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 2.2e-143 513.8 684 45.3
Aqoxy430s001 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 1.6e-138 497.7 525 55.0
arahy.Tifrunner.gnm1.ann1.KK4CMR Arachis hypogaea HOM05D005045 ORTHO05D006386 1.1e-129 468.4 392 64.8
CBR_g44539 Chara braunii HOM05D005045 ORTHO05D006386 3.1e-129 466.8 760 38.2
AUR62020862 Chenopodium quinoa HOM05D005045 ORTHO05D006386 3.4e-128 463.4 433 58.4
Ca_16414_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 3.4e-112 410.2 222 91.4
Lju912C0T2 Lonicera japonica HOM05D005045 ORTHO05D006386 1.6e-106 391.3 458 50.7
unitig_0.g1960 Utricularia gibba HOM05D005045 ORTHO05D006386 1.1e-105 388.7 224 86.6
BcaNung07125 Brassica carinata HOM05D005045 ORTHO05D006386 2.5e-86 324.3 311 58.5
unitig_0.g1961 Utricularia gibba HOM05D005045 ORTHO05D006386 3.5e-85 320.5 500 39.8
Ah.04g149400 Amaranthus hybridus HOM05D005045 ORTHO05D006386 1.3e-84 318.5 223 74.9
PRCOL_00000463 Prasinoderma coloniale HOM05D005045 ORTHO05D006386 5.5e-78 296.6 768 30.3
MCO01G132 Micromonas commoda HOM05D005045 ORTHO05D006386 1.6e-77 295.0 762 32.3
COL.COLO4_20231 Corchorus olitorius HOM05D005045 ORTHO05D006386 2.0e-72 278.1 602 35.9
Ca_16415_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 2.6e-72 277.7 408 43.9
Ah.04g149410 Amaranthus hybridus HOM05D005045 ORTHO05D006386 1.1e-70 272.3 540 34.1
AUR62020863 Chenopodium quinoa HOM05D005045 ORTHO05D006386 1.6e-69 268.5 349 43.0
Cre03.g192550 Chlamydomonas reinhardtii HOM05D005045 ORTHO05D006386 1.8e-68 265.0 788 28.9
MBI07_g27365_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 9.7e-67 259.2 203 61.6
BcaNung07126 Brassica carinata HOM05D005045 ORTHO05D006386 1.5e-64 251.9 231 54.1
Nitab4.5_0003358g0100 Nicotiana tabacum HOM05D005045 ORTHO05D006386 2.7e-61 241.1 126 94.4
Lju912A1G33 Lonicera japonica HOM05D005045 ORTHO05D006386 2.3e-52 211.5 176 60.2
Oeu034322.3 Olea europaea HOM05D005045 ORTHO05D006386 8.8e-52 209.5 350 37.7
Cfa022909 Carpinus fangiana HOM05D005045 ORTHO05D006386 1.8e-49 201.8 763 24.8
CARHR125720 Cardamine hirsuta HOM05D005045 ORTHO05D006386 2.2e-47 194.9 188 52.1
BcaB01g04007 Brassica carinata HOM05D005045 ORTHO05D006386 2.3e-44 184.9 232 46.1
Prupe.1G180400 Prunus persica HOM05D005045 ORTHO05D006386 1.6e-40 172.2 170 55.3
Os02g0497500 Oryza sativa ssp. japonica HOM05D005045 ORTHO05D006386 5.0e-39 167.2 168 47.6
BcaC01g05925 Brassica carinata HOM05D005045 ORTHO05D006386 5.7e-35 153.7 231 40.3
Lj6A381G13 Lonicera japonica HOM05D005045 ORTHO05D006386 1.8e-33 148.7 92 75.0
Rhsim02G0061800 Rhododendron simsii HOM05D005045 ORTHO05D006386 7.3e-30 136.7 72 87.5
Actinidia11455 Actinidia chinensis HOM05D005045 ORTHO05D006386 1.6e-29 135.6 121 59.5
BcaB01g04008 Brassica carinata HOM05D005045 ORTHO05D006386 3.7e-26 124.4 137 53.3
MBI07_g45033_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 9.5e-22 109.8 100 62.0
SHI26067 Sapria himalayana HOM05D005045 ORTHO05D006386 5.2e-20 104.0 91 57.1
QL10p041126 Quercus lobata HOM05D005045 ORTHO05D006386 6.8e-12 77.0 81 51.9
BcaC05g28670 Brassica carinata HOM05D005045 ORTHO05D006386 2.2e-10 72.0 77 54.5
Ca_16407_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 1.7e-07 62.4 52 59.6
Ca_16416_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 1.7e-07 62.4 52 59.6


User provided reference genes

Program Settings