Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_02054 Sequoiadendron giganteum HOM05D000032 ORTHO05D005297 4.6e-138 494.6 257 100.0
MSTRG.191 Avicennia marina HOM05D000032 ORTHO05D005297 2.5e-51 206.5 166 62.7
Eucgr.G03090 Eucalyptus grandis HOM05D000032 ORTHO05D005297 4.3e-51 205.7 170 62.9
Nn2g10990 Nelumbo nucifera HOM05D000032 ORTHO05D005297 4.3e-51 205.7 171 60.8
ATR0665G523 Amborella trichopoda HOM05D000032 ORTHO05D005297 9.6e-51 204.5 169 62.1
QL08p063816 Quercus lobata HOM05D000032 ORTHO05D005297 9.6e-51 204.5 165 63.0
MD01G1158100 Malus domestica HOM05D000032 ORTHO05D005297 1.3e-50 204.1 168 60.1
TWI73G0759 Tripterygium wilfordii HOM05D000032 ORTHO05D005297 1.6e-50 203.8 167 61.1
vmacro06947 Vaccinium macrocarpon HOM05D000032 ORTHO05D005297 2.1e-50 203.4 169 62.1
RcHm_v2.0_Chr1g0371021 Rosa chinensis HOM05D000032 ORTHO05D005297 6.2e-50 201.8 167 60.5
FAN06G4119 Fragaria x ananassa HOM05D000032 ORTHO05D005297 1.4e-49 200.7 167 59.9
Gohir.A05G332100 Gossypium hirsutum HOM05D000032 ORTHO05D005297 1.8e-49 200.3 167 62.3
Aqoxy2G00796 Aquilegia oxysepala HOM05D000032 ORTHO05D005297 3.1e-49 199.5 168 60.1
FvH4_7g25130 Fragaria vesca HOM05D000032 ORTHO05D005297 3.1e-49 199.5 167 59.3
TAR629G0475 Trochodendron aralioides HOM05D000032 ORTHO05D005297 4.0e-49 199.1 165 61.8
FAN01G2718 Fragaria x ananassa HOM05D000032 ORTHO05D005297 6.9e-49 198.4 167 58.7
Glyma.18G024200 Glycine max HOM05D000032 ORTHO05D005297 6.9e-49 198.4 167 59.9
Cpa.g.sc19.129 Carica papaya HOM05D000032 ORTHO05D005297 1.2e-48 197.6 166 59.6
CiPaw.02G195500 Carya illinoinensis HOM05D000032 ORTHO05D005297 1.2e-48 197.6 167 60.5
Peaxi162Scf00284g00418 Petunia axillaris HOM05D000032 ORTHO05D005297 1.5e-48 197.2 170 60.6
Gorai.012G079600 Gossypium raimondii HOM05D000032 ORTHO05D005297 3.4e-48 196.1 166 60.2
TAR636G3337 Trochodendron aralioides HOM05D000032 ORTHO05D005297 3.4e-48 196.1 168 58.3
Phvul.001G246000 Phaseolus vulgaris HOM05D000032 ORTHO05D005297 4.5e-48 195.7 167 61.7
Rhsim03G0147200 Rhododendron simsii HOM05D000032 ORTHO05D005297 5.8e-48 195.3 167 59.9
HanXRQChr09g0253201 Helianthus annuus HOM05D000032 ORTHO05D005297 9.9e-48 194.5 167 56.3
Nitab4.5_0003710g0050 Nicotiana tabacum HOM05D000032 ORTHO05D005297 2.9e-47 193.0 171 58.5
Solyc02g078880.4 Solanum lycopersicum HOM05D000032 ORTHO05D005297 2.9e-47 193.0 174 58.0
TPR.G27740 Trifolium pratense HOM05D000032 ORTHO05D005297 4.9e-47 192.2 166 57.8
THA.LOC104826841 Tarenaya hassleriana HOM05D000032 ORTHO05D005297 6.4e-47 191.8 169 58.6
Actinidia33906 Actinidia chinensis HOM05D000032 ORTHO05D005297 8.4e-47 191.4 167 59.3
Glyma.11G232900 Glycine max HOM05D000032 ORTHO05D005297 8.4e-47 191.4 161 60.2
AUR62022947 Chenopodium quinoa HOM05D000032 ORTHO05D005297 1.1e-46 191.0 169 56.8
Lj6g0003351 Lotus japonicus HOM05D000032 ORTHO05D005297 1.9e-46 190.3 171 57.9
CAN.G1181.2 Capsicum annuum HOM05D000032 ORTHO05D005297 3.2e-46 189.5 170 57.1
Cfa001278 Carpinus fangiana HOM05D000032 ORTHO05D005297 3.2e-46 189.5 159 62.3
Nitab4.5_0000058g0070 Nicotiana tabacum HOM05D000032 ORTHO05D005297 3.2e-46 189.5 174 56.3
Sopen02g023690 Solanum pennellii HOM05D000032 ORTHO05D005297 3.2e-46 189.5 171 56.7
Lsat_1_v5_gn_9_60860 Lactuca sativa HOM05D000032 ORTHO05D005297 4.2e-46 189.1 167 57.5
Psat5g130640 Pisum sativum HOM05D000032 ORTHO05D005297 4.2e-46 189.1 166 56.0
Ca_15155_v3 Cicer arietinum L. HOM05D000032 ORTHO05D005297 1.2e-45 187.6 165 59.4
Sabra08G0054300 Salix brachista HOM05D000032 ORTHO05D005297 1.2e-45 187.6 158 61.4
arahy.Tifrunner.gnm1.ann1.B8N1RQ Arachis hypogaea HOM05D000032 ORTHO05D005297 1.6e-45 187.2 168 57.7
Dinv21780 Davidia involucrata HOM05D000032 ORTHO05D005297 1.6e-45 187.2 168 58.9
Medtr3g071620 Medicago truncatula HOM05D000032 ORTHO05D005297 1.6e-45 187.2 166 56.6
Ciclev10031038m.g Citrus clementina HOM05D000032 ORTHO05D005297 2.7e-45 186.4 167 59.3
Lj8C62T9 Lonicera japonica HOM05D000032 ORTHO05D005297 2.7e-45 186.4 166 59.0
CSS0029822 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D005297 3.5e-45 186.0 169 59.2
MD07G1226800 Malus domestica HOM05D000032 ORTHO05D005297 3.5e-45 186.0 166 57.8
HPP92_013771 Vanilla planifolia HOM05D000032 ORTHO05D005297 3.5e-45 186.0 185 54.6
FAN14G2577 Fragaria x ananassa HOM05D000032 ORTHO05D005297 7.9e-45 184.9 167 55.7
Thecc.10G010800 Theobroma cacao HOM05D000032 ORTHO05D005297 7.9e-45 184.9 168 58.9
MELO3C018389.2 Cucumis melo HOM05D000032 ORTHO05D005297 1.8e-44 183.7 165 55.8
PSO339G0799 Papaver somniferum HOM05D000032 ORTHO05D005297 1.8e-44 183.7 165 56.4
CDE07G1349 Ceratophyllum demersum HOM05D002308 ORTHO05D005297 3.0e-44 183.0 271 45.8
Hund15880 Selenicereus undatus HOM05D000032 ORTHO05D005297 3.0e-44 183.0 179 57.0
Manes.07G074600 Manihot esculenta HOM05D000032 ORTHO05D005297 5.1e-44 182.2 168 57.1
Oeu043173.1 Olea europaea HOM05D000032 ORTHO05D005297 5.1e-44 182.2 190 54.2
Ah.16g103900 Amaranthus hybridus HOM05D000032 ORTHO05D005297 6.7e-44 181.8 169 56.8
Os01g0164500 Oryza sativa ssp. japonica HOM05D000032 ORTHO05D005297 1.1e-43 181.0 178 53.4
Ciclev10033565m.g Citrus clementina HOM05D000032 ORTHO05D005297 1.9e-43 180.3 194 52.6
FvH4_6g03480 Fragaria vesca HOM05D000032 ORTHO05D005297 1.9e-43 180.3 167 55.1
FAN03G1139 Fragaria x ananassa HOM05D000032 ORTHO05D005297 1.9e-43 180.3 174 54.6
DCAR_011847 Daucus carota HOM05D000032 ORTHO05D005297 2.5e-43 179.9 168 54.8
CANSAT56G1113 Cannabis sativa HOM05D000032 ORTHO05D005297 3.3e-43 179.5 166 54.8
Zm00001eb123450 Zea mays HOM05D000032 ORTHO05D005297 3.3e-43 179.5 176 52.8
Cc02_g06020 Coffea canephora HOM05D000032 ORTHO05D005297 5.6e-43 178.7 166 57.2
VMungo1383G0796 Vigna mungo HOM05D000032 ORTHO05D005297 5.6e-43 178.7 166 57.2
ClCG07G004580 Citrullus lanatus HOM05D000032 ORTHO05D005297 9.6e-43 177.9 166 54.2
FAN05G3944 Fragaria x ananassa HOM05D000032 ORTHO05D005297 9.6e-43 177.9 167 54.5
FAN05G0134 Fragaria x ananassa HOM05D000032 ORTHO05D005297 1.3e-42 177.6 167 54.5
Aa31LG11G6520 Aethionema arabicum HOM05D000032 ORTHO05D005297 1.6e-42 177.2 177 49.7
COL.COLO4_25788 Corchorus olitorius HOM05D000032 ORTHO05D005297 2.1e-42 176.8 168 56.5
Lalb_Chr23g0277101 Lupinus albus HOM05D000032 ORTHO05D005297 2.1e-42 176.8 166 54.8
PGR142G3724 Punica granatum HOM05D000032 ORTHO05D005297 3.7e-42 176.0 167 56.9
Migut.F02079 Erythranthe guttata HOM05D000032 ORTHO05D005297 6.2e-42 175.3 166 57.2
Cc00_g12060 Coffea canephora HOM05D000032 ORTHO05D005297 8.2e-42 174.9 167 56.9
Hma1.2p1_1013F.1_g247770 Hydrangea macrophylla HOM05D000032 ORTHO05D005297 8.2e-42 174.9 174 55.7
Potri.008G073100 Populus trichocarpa HOM05D000032 ORTHO05D005297 1.4e-41 174.1 167 55.7
unitig_0.g251 Utricularia gibba HOM05D000032 ORTHO05D005297 2.4e-41 173.3 169 53.3
BolC2t06201H Brassica oleracea HOM05D000032 ORTHO05D005297 5.3e-41 172.2 171 50.9
C02p02360 Brassica napus HOM05D000032 ORTHO05D005297 6.9e-41 171.8 171 50.9
BraA02t04850Z Brassica rapa HOM05D000032 ORTHO05D005297 6.9e-41 171.8 171 50.9
Duzib114G0601 Durio zibethinus HOM05D000032 ORTHO05D005297 6.9e-41 171.8 167 55.1
Sed0025808 Sechium edule HOM05D000032 ORTHO05D005297 6.9e-41 171.8 166 53.6
arahy.Tifrunner.gnm1.ann1.J9S8YD Arachis hypogaea HOM05D000032 ORTHO05D005297 1.5e-40 170.6 168 54.2
arahy.Tifrunner.gnm1.ann1.THB4SD Arachis hypogaea HOM05D000032 ORTHO05D005297 1.5e-40 170.6 168 54.2
Carub.0006s0435 Capsella rubella HOM05D000032 ORTHO05D005297 2.6e-40 169.9 171 50.9
AUR62012307 Chenopodium quinoa HOM05D000032 ORTHO05D005297 2.6e-40 169.9 150 57.3
Mapoly0027s0149 Marchantia polymorpha HOM05D000032 ORTHO05D005297 3.4e-40 169.5 163 54.6
PGSC0003DMG400022369 Solanum tuberosum HOM05D000032 ORTHO05D005297 7.6e-40 168.3 171 52.0
BcaB05g21715 Brassica carinata HOM05D000032 ORTHO05D005297 1.3e-39 167.5 166 53.0
Sp6g37390 Schrenkiella parvula HOM05D000032 ORTHO05D005297 1.7e-39 167.2 178 50.0
Pp3c11_500 Physcomitrium patens HOM05D000032 ORTHO05D005297 2.2e-39 166.8 229 45.4
Pp3c11_510 Physcomitrium patens HOM05D000032 ORTHO05D005297 2.2e-39 166.8 229 45.4
Haze_17273 Corylus avellana HOM05D000032 ORTHO05D005297 6.5e-39 165.2 170 57.1
Thhalv10013039m.g Eutrema salsugineum HOM05D000032 ORTHO05D005297 6.5e-39 165.2 174 50.6
AL2G31390 Arabidopsis lyrata HOM05D000032 ORTHO05D005297 8.4e-39 164.9 174 51.1
arahy.Tifrunner.gnm1.ann1.Z9H7PX Arachis hypogaea HOM05D000032 ORTHO05D005297 1.9e-38 163.7 159 52.8
Haze_17282 Corylus avellana HOM05D000032 ORTHO05D005297 2.5e-38 163.3 170 56.5
ECA232G2267 Erigeron canadensis HOM05D001505 ORTHO05D005297 2.5e-38 163.3 148 58.1
EL10Ac2g04897 Beta vulgaris HOM05D000032 ORTHO05D005297 1.2e-37 161.0 206 45.1
SGA_v2.0_scaffold858G53676 Striga asiatica HOM05D000032 ORTHO05D005297 1.2e-37 161.0 168 51.8
Manes.07G134800 Manihot esculenta HOM05D000032 ORTHO05D005297 2.7e-37 159.8 168 52.4
SMO304G0011 Selaginella moellendorffii HOM05D000032 ORTHO05D005297 3.5e-37 159.5 165 50.3
SalBow5G2598 Salvia bowleyana HOM05D000032 ORTHO05D005297 1.0e-36 157.9 164 50.0
EL10Ac2g04668 Beta vulgaris HOM05D000032 ORTHO05D005297 1.8e-36 157.1 168 50.6
Carub.0005s0159 Capsella rubella HOM05D000032 ORTHO05D005297 1.8e-36 157.1 168 48.2
AL6G15340 Arabidopsis lyrata HOM05D000032 ORTHO05D005297 5.1e-36 155.6 171 48.0
MBI03_g33615_MAGBIO Magnolia biondii HOM05D000032 ORTHO05D005297 8.7e-36 154.8 96 75.0
CBR_g55379 Chara braunii HOM05D000032 ORTHO05D005297 2.5e-35 153.3 197 45.7
CARHR207810 Cardamine hirsuta HOM05D000032 ORTHO05D005297 3.7e-34 149.4 175 45.7
AT5G05450 Arabidopsis thaliana HOM05D000032 ORTHO05D005297 8.2e-34 148.3 171 47.4
FAN09G2711 Fragaria x ananassa HOM05D000032 ORTHO05D005297 2.4e-33 146.7 166 48.8
Thhalv10020409m.g Eutrema salsugineum HOM05D000032 ORTHO05D005297 3.1e-33 146.4 163 49.1
SMO145G0278 Selaginella moellendorffii HOM05D000032 ORTHO05D005297 4.5e-32 142.5 148 49.3
Cc00_g02450 Coffea canephora HOM05D000032 ORTHO05D005297 1.0e-31 141.4 169 49.1
BcaC03g14442 Brassica carinata HOM05D000032 ORTHO05D005297 1.4e-30 137.5 168 48.2
AT1G71370 Arabidopsis thaliana HOM05D000032 ORTHO05D005297 3.2e-30 136.3 146 49.3
Cc00_g03670 Coffea canephora HOM05D000287 ORTHO05D005297 1.2e-29 134.4 170 48.8
AT1G71280 Arabidopsis thaliana HOM05D000032 ORTHO05D005297 2.1e-29 133.7 146 47.9
Prupe.2G256400 Prunus persica HOM05D000032 ORTHO05D005297 3.6e-29 132.9 95 65.3
CsaV3_5G010520 Cucumis sativus L. HOM05D000032 ORTHO05D005297 4.6e-29 132.5 77 76.6
Thhalv10015240m.g Eutrema salsugineum HOM05D000032 ORTHO05D005297 6.1e-29 132.1 166 45.2
C02p18560 Brassica napus HOM05D000032 ORTHO05D005297 1.6e-26 124.0 161 46.6
BolC2t07996H Brassica oleracea HOM05D000032 ORTHO05D005297 1.6e-26 124.0 161 46.6
BraA10t45119Z Brassica rapa HOM05D004863 ORTHO05D005297 1.8e-25 120.6 142 44.4
BcaC06g32260 Brassica carinata HOM05D004863 ORTHO05D005297 2.0e-24 117.1 79 64.6
Cre06.g282600 Chlamydomonas reinhardtii HOM05D000032 ORTHO05D005297 1.0e-23 114.8 182 39.0
CARHR211680 Cardamine hirsuta HOM05D000032 ORTHO05D005297 1.7e-23 114.0 102 53.9
A02p11190 Brassica napus HOM05D000032 ORTHO05D040598 3.8e-23 112.8 156 42.9
Sp6g36680 Schrenkiella parvula HOM05D000032 ORTHO05D005297 3.8e-23 112.8 161 42.9
Potri.010G184132 Populus trichocarpa HOM05D000032 ORTHO05D005297 5.0e-23 112.5 85 62.4
A10p30780 Brassica napus HOM05D004863 ORTHO05D005297 4.2e-22 109.4 80 62.5
C09p71270 Brassica napus HOM05D004863 ORTHO05D005297 4.6e-21 105.9 79 55.7
FAN05G5768 Fragaria x ananassa HOM05D000032 ORTHO05D005297 6.1e-21 105.5 78 62.8
Oeu051632.1 Olea europaea HOM05D000032 ORTHO05D005297 5.1e-20 102.4 121 47.9
FvH4_6g01590 Fragaria vesca HOM05D000032 ORTHO05D005297 1.1e-17 94.7 60 70.0
FAN14G2339 Fragaria x ananassa HOM05D000032 ORTHO05D005297 1.1e-17 94.7 60 70.0
FAN14G5584 Fragaria x ananassa HOM05D000032 ORTHO05D005297 1.1e-17 94.7 60 70.0
MCO12G016 Micromonas commoda HOM05D000032 ORTHO05D005297 1.1e-17 94.7 93 47.3
Atru.chr12.103 Acer truncatum HOM05D000032 ORTHO05D005297 5.9e-16 89.0 164 34.8
FAN02G3476 Fragaria x ananassa HOM05D000032 ORTHO05D005297 1.0e-15 88.2 65 60.0
PRCOL_00005127 Prasinoderma coloniale HOM05D000032 ORTHO05D005297 2.7e-13 80.1 83 48.2
CDE06G2780 Ceratophyllum demersum HOM05D000032 ORTHO05D005297 2.2e-10 70.5 103 43.7
Cfa024542 Carpinus fangiana HOM05D000032 ORTHO05D005297 1.4e-09 67.8 178 32.0
Gohir.D04G070800 Gossypium hirsutum HOM05D000032 ORTHO05D005297 1.8e-09 67.4 33 84.8
CiPaw.02G195900 Carya illinoinensis HOM05D000032 ORTHO05D005297 3.1e-09 66.6 32 81.2
GSVIVG01032750001 Vitis vinifera HOM05D000032 ORTHO05D005297 1.2e-08 64.7 30 90.0
ATR0737G091 Amborella trichopoda HOM05D000032 ORTHO05D005297 1.7e-07 60.8 94 41.5


User provided reference genes

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