Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_01569 Sequoiadendron giganteum HOM05D012667 ORTHO05D020263 2.5e-155 552.0 267 100.0
Nitab4.5_0008182g0030 Nicotiana tabacum HOM05D000140 ORTHO05D000087 1.7e-13 80.9 84 50.0
Nitab4.5_0014482g0010 Nicotiana tabacum HOM05D000140 ORTHO05D000087 4.8e-13 79.3 84 50.0
Solyc03g019890.3 Solanum lycopersicum HOM05D000140 ORTHO05D000087 8.3e-13 78.6 84 50.0
PGSC0003DMG400015211 Solanum tuberosum HOM05D000140 ORTHO05D000087 8.3e-13 78.6 84 50.0
Migut.O00283 Erythranthe guttata HOM05D000140 ORTHO05D000087 3.1e-12 76.6 82 47.6
TAR269G0001 Trochodendron aralioides HOM05D000140 ORTHO05D000087 3.1e-12 76.6 83 44.6
Peaxi162Scf00171g00044 Petunia axillaris HOM05D000140 ORTHO05D000087 4.1e-12 76.3 84 47.6
PSO170G3657 Papaver somniferum HOM05D000140 ORTHO05D000087 5.4e-12 75.9 89 43.8
Sopen03g029730 Solanum pennellii HOM05D000140 ORTHO05D000087 7.0e-12 75.5 84 48.8
CAN.G861.23 Capsicum annuum HOM05D000140 ORTHO05D000087 9.1e-12 75.1 69 53.6
Nn5g28373 Nelumbo nucifera HOM05D000140 ORTHO05D000087 9.1e-12 75.1 84 45.2
PSO528G0251 Papaver somniferum HOM05D000140 ORTHO05D000087 1.2e-11 74.7 89 42.7
Ciclev10018839m.g Citrus clementina HOM05D000140 ORTHO05D000087 7.7e-11 72.0 82 43.9
Hma1.2p1_1551F.1_g290140 Hydrangea macrophylla HOM05D000140 ORTHO05D000087 7.7e-11 72.0 80 51.2
Manes.12G147300 Manihot esculenta HOM05D000140 ORTHO05D000087 1.0e-10 71.6 82 43.9
Atru.chr4.1035 Acer truncatum HOM05D000140 ORTHO05D000087 1.3e-10 71.2 82 45.1
ATR0709G011 Amborella trichopoda HOM05D000140 ORTHO05D000087 1.3e-10 71.2 82 45.1
Sabra07G0082700 Salix brachista HOM05D000140 ORTHO05D000087 1.3e-10 71.2 77 44.2
SalBow5G0032 Salvia bowleyana HOM05D000140 ORTHO05D000087 1.7e-10 70.9 69 49.3
Dinv30340 Davidia involucrata HOM05D000140 ORTHO05D000087 2.2e-10 70.5 79 48.1
DCAR_013174 Daucus carota HOM05D000140 ORTHO05D000087 2.9e-10 70.1 69 47.8
Lsat_1_v5_gn_3_126140 Lactuca sativa HOM05D000140 ORTHO05D000087 2.9e-10 70.1 82 43.9
Potri.007G099800 Populus trichocarpa HOM05D000140 ORTHO05D000087 2.9e-10 70.1 82 42.7
Manes.12G147602 Manihot esculenta HOM05D000140 ORTHO05D000087 3.8e-10 69.7 69 47.8
unitig_61.g26359 Utricularia gibba HOM05D000140 ORTHO05D000087 3.8e-10 69.7 69 49.3
GSVIVG01022339001 Vitis vinifera HOM05D000140 ORTHO05D000087 3.8e-10 69.7 85 43.5
PGR119G2459 Punica granatum HOM05D000140 ORTHO05D000087 5.0e-10 69.3 78 44.9
MSTRG.11566 Avicennia marina HOM05D000140 ORTHO05D000087 6.5e-10 68.9 84 39.3
HanXRQChr13g0423671 Helianthus annuus HOM05D000140 ORTHO05D000087 8.5e-10 68.6 68 47.1
CSS0026846 Camellia sinensis var. sinensis HOM05D000140 ORTHO05D000087 1.1e-09 68.2 82 43.9
Cc00_g04760 Coffea canephora HOM05D000140 ORTHO05D000087 1.1e-09 68.2 79 45.6
Aa31LG1G18060 Aethionema arabicum HOM05D000140 ORTHO05D000087 1.5e-09 67.8 85 43.5
CANSAT01G3176 Cannabis sativa HOM05D000140 ORTHO05D000087 1.5e-09 67.8 69 46.4
ClCG02G000040 Citrullus lanatus HOM05D000140 ORTHO05D000087 1.5e-09 67.8 78 42.3
Oeu061185.2 Olea europaea HOM05D000140 ORTHO05D000087 1.5e-09 67.8 79 44.3
Sp2g26880 Schrenkiella parvula HOM05D000140 ORTHO05D000087 1.5e-09 67.8 57 50.9
SGA_v2.0_scaffold25G10727 Striga asiatica HOM05D000140 ORTHO05D000087 1.5e-09 67.8 69 46.4
Aqoxy6G00262 Aquilegia oxysepala HOM05D000140 ORTHO05D000087 1.9e-09 67.4 84 40.5
Carub.0008s2458 Capsella rubella HOM05D000140 ORTHO05D000087 1.9e-09 67.4 57 52.6
Haze_25361 Corylus avellana HOM05D000140 ORTHO05D000087 1.9e-09 67.4 82 42.7
Lj8C493G4 Lonicera japonica HOM05D000140 ORTHO05D000087 1.9e-09 67.4 82 42.7
Ciclev10000393m.g Citrus clementina HOM05D000140 ORTHO05D000087 3.2e-09 66.6 83 39.8
Gohir.A12G001500 Gossypium hirsutum HOM05D000140 ORTHO05D000087 3.2e-09 66.6 82 41.5
Gohir.D12G001300 Gossypium hirsutum HOM05D000140 ORTHO05D000087 3.2e-09 66.6 82 41.5
PSO528G0219 Papaver somniferum HOM05D000140 ORTHO05D000087 3.2e-09 66.6 172 30.8
Thecc.01G140200 Theobroma cacao HOM05D000140 ORTHO05D000087 3.2e-09 66.6 82 40.2
CiPaw.03G117100 Carya illinoinensis HOM05D000140 ORTHO05D000087 4.2e-09 66.2 69 46.4
Duzib264G0555 Durio zibethinus HOM05D000140 ORTHO05D000087 4.2e-09 66.2 82 41.5
MBI06_g04551_MAGBIO Magnolia biondii HOM05D000140 ORTHO05D000087 4.2e-09 66.2 83 38.6
Actinidia20044 Actinidia chinensis HOM05D000140 ORTHO05D000087 5.5e-09 65.9 78 43.6
Aa31LG1G18080 Aethionema arabicum HOM05D000140 ORTHO05D000087 5.5e-09 65.9 60 51.7
Thhalv10003705m.g Eutrema salsugineum HOM05D000140 ORTHO05D000087 5.5e-09 65.9 84 42.9
PSO528G0013 Papaver somniferum HOM05D000140 ORTHO05D020263 5.5e-09 65.9 61 50.8
TWI31G1158 Tripterygium wilfordii HOM05D000140 ORTHO05D000087 5.5e-09 65.9 82 42.7
AL8G41030 Arabidopsis lyrata HOM05D000140 ORTHO05D000087 7.2e-09 65.5 56 51.8
CSS0013151 Camellia sinensis var. sinensis HOM05D000140 ORTHO05D020263 7.2e-09 65.5 53 50.9
MELO3C023188.2 Cucumis melo HOM05D000140 ORTHO05D000087 7.2e-09 65.5 78 41.0
CsaV3_2G019670 Cucumis sativus L. HOM05D000140 ORTHO05D000087 7.2e-09 65.5 78 41.0
Lalb_Chr11g0068691 Lupinus albus HOM05D000140 ORTHO05D000087 7.2e-09 65.5 84 39.3
Gorai.008G000600 Gossypium raimondii HOM05D000140 ORTHO05D000087 9.4e-09 65.1 82 40.2
QL10p040816 Quercus lobata HOM05D000140 ORTHO05D000087 9.4e-09 65.1 84 42.9
Sed0015145 Sechium edule HOM05D000140 ORTHO05D000087 9.4e-09 65.1 65 46.2
Hund07223 Selenicereus undatus HOM05D000140 ORTHO05D000087 1.2e-08 64.7 68 45.6
SEGI_04725 Sequoiadendron giganteum HOM05D000003 ORTHO05D000004 1.2e-08 64.7 38 71.1
BcaC01g02621 Brassica carinata HOM05D000140 ORTHO05D000087 1.6e-08 64.3 76 42.1
C03p62630 Brassica napus HOM05D000140 ORTHO05D000087 1.6e-08 64.3 69 44.9
CARHR277720 Cardamine hirsuta HOM05D000140 ORTHO05D000087 1.6e-08 64.3 57 47.4
MD15G1136400 Malus domestica HOM05D000140 ORTHO05D000087 1.6e-08 64.3 83 43.4
Sc16g0009590 Simmondsia chinensis HOM05D000140 ORTHO05D000087 1.6e-08 64.3 69 44.9
AT5G63810 Arabidopsis thaliana HOM05D000140 ORTHO05D000087 2.1e-08 63.9 44 59.1
Cc02_g12590 Coffea canephora HOM05D000140 ORTHO05D000087 2.1e-08 63.9 78 39.7
COL.COLO4_12094 Corchorus olitorius HOM05D000140 ORTHO05D000087 2.1e-08 63.9 82 42.7
A06p30430 Brassica napus HOM05D000140 ORTHO05D000087 2.7e-08 63.5 69 44.9
BolC3t18520H Brassica oleracea HOM05D000140 ORTHO05D000087 2.7e-08 63.5 69 44.9
BraA06t25992Z Brassica rapa HOM05D000140 ORTHO05D000087 2.7e-08 63.5 69 44.9
Lj1A1211G87 Lonicera japonica HOM05D000140 ORTHO05D000087 3.6e-08 63.2 50 50.0
CDE06G0263 Ceratophyllum demersum HOM05D000140 ORTHO05D000087 4.7e-08 62.8 79 44.3
Duzib138G1629 Durio zibethinus HOM05D000140 ORTHO05D000087 4.7e-08 62.8 84 38.1
Lsat_1_v5_gn_6_60680 Lactuca sativa HOM05D000140 ORTHO05D000087 6.1e-08 62.4 82 40.2
THA.LOC104800190 Tarenaya hassleriana HOM05D000140 ORTHO05D000087 6.1e-08 62.4 69 46.4
Eucgr.I00108 Eucalyptus grandis HOM05D000140 ORTHO05D000087 8.0e-08 62.0 77 39.0
FAN26G1770 Fragaria x ananassa HOM05D000140 ORTHO05D000087 8.0e-08 62.0 69 44.9
HanXRQChr03g0092931 Helianthus annuus HOM05D000140 ORTHO05D000087 8.0e-08 62.0 68 48.5
Lj1g0001028 Lotus japonicus HOM05D000140 ORTHO05D000087 8.0e-08 62.0 75 37.3
Rhsim13G0174300 Rhododendron simsii HOM05D000140 ORTHO05D000087 8.0e-08 62.0 53 45.3
SEGI_17902 Sequoiadendron giganteum HOM05D012667 ORTHO05D020263 8.0e-08 62.0 37 73.0
Lalb_Chr08g0238071 Lupinus albus HOM05D000140 ORTHO05D000087 1.0e-07 61.6 57 47.4
Medtr3g096900 Medicago truncatula HOM05D000140 ORTHO05D000087 1.0e-07 61.6 69 42.0
RcHm_v2.0_Chr2g0122791 Rosa chinensis HOM05D000140 ORTHO05D000087 1.0e-07 61.6 79 43.0
SEGI_26028 Sequoiadendron giganteum HOM05D012667 ORTHO05D000004 1.0e-07 61.6 38 68.4
ECA233G5242 Erigeron canadensis HOM05D000140 ORTHO05D000087 1.4e-07 61.2 77 41.6
Prupe.4G278500 Prunus persica HOM05D000140 ORTHO05D000087 1.4e-07 61.2 69 44.9
CDE05G2366 Ceratophyllum demersum HOM05D000140 ORTHO05D000087 1.8e-07 60.8 77 37.7
Ca_16994_v3 Cicer arietinum L. HOM05D000140 ORTHO05D000087 1.8e-07 60.8 82 41.5
Ca_17022_v3 Cicer arietinum L. HOM05D000140 ORTHO05D000087 1.8e-07 60.8 82 41.5
COL.COLO4_12095 Corchorus olitorius HOM05D000140 ORTHO05D000087 1.8e-07 60.8 82 39.0
FAN19G1417 Fragaria x ananassa HOM05D000140 ORTHO05D000087 1.8e-07 60.8 79 43.0
FAN23G2701 Fragaria x ananassa HOM05D000140 ORTHO05D000087 1.8e-07 60.8 82 41.5
Glyma.06G157200 Glycine max HOM05D000140 ORTHO05D000087 1.8e-07 60.8 82 40.2
Ah.04g157670 Amaranthus hybridus HOM05D000140 ORTHO05D000087 2.3e-07 60.5 82 41.5
arahy.Tifrunner.gnm1.ann1.JDR7GI Arachis hypogaea HOM05D000140 ORTHO05D000087 2.3e-07 60.5 84 36.9
Cpa.g.sc37.18 Carica papaya HOM05D000140 ORTHO05D000087 2.3e-07 60.5 52 50.0
Os01g0875500 Oryza sativa ssp. japonica HOM05D000140 ORTHO05D000087 2.3e-07 60.5 70 45.7
Sabra11G0030800 Salix brachista HOM05D000140 ORTHO05D000087 2.3e-07 60.5 54 46.3
ATR0069G046 Amborella trichopoda HOM05D000140 ORTHO05D000087 3.0e-07 60.1 77 41.6
HanXRQChr17g0555721 Helianthus annuus HOM05D000140 ORTHO05D000087 3.0e-07 60.1 62 41.9
Hma1.2p1_0144F.1_g064880 Hydrangea macrophylla HOM05D000140 ORTHO05D000087 3.0e-07 60.1 50 52.0
Phvul.009G153100 Phaseolus vulgaris HOM05D000140 ORTHO05D000087 3.0e-07 60.1 82 40.2
Psat5g058720 Pisum sativum HOM05D000140 ORTHO05D000087 3.0e-07 60.1 58 46.6
Thecc.01G140000 Theobroma cacao HOM05D000140 ORTHO05D000087 3.0e-07 60.1 82 37.8
VMungo1309G1315 Vigna mungo HOM05D000140 ORTHO05D000087 3.0e-07 60.1 68 45.6
FvH4_1g25130 Fragaria vesca HOM05D000140 ORTHO05D000087 4.0e-07 59.7 79 41.8
HanXRQChr07g0185491 Helianthus annuus HOM05D000140 ORTHO05D000087 4.0e-07 59.7 90 37.8
Oeu038223.1 Olea europaea HOM05D000140 ORTHO05D000087 4.0e-07 59.7 45 53.3
vmacro22279 Vaccinium macrocarpon HOM05D000140 ORTHO05D000087 4.0e-07 59.7 52 50.0
EL10Ac4g09681 Beta vulgaris HOM05D000140 ORTHO05D000087 5.2e-07 59.3 68 42.6
FAN28G0402 Fragaria x ananassa HOM05D000140 ORTHO05D000087 5.2e-07 59.3 69 44.9
Nn3g20046 Nelumbo nucifera HOM05D000140 ORTHO05D000087 5.2e-07 59.3 77 41.6
Potri.011G044300 Populus trichocarpa HOM05D000140 ORTHO05D000087 5.2e-07 59.3 54 42.6
QL05p081713 Quercus lobata HOM05D000140 ORTHO05D000087 5.2e-07 59.3 84 32.1
QL05p082020 Quercus lobata HOM05D000140 ORTHO05D000087 5.2e-07 59.3 84 32.1
Zm00001eb146080 Zea mays HOM05D000140 ORTHO05D000087 5.2e-07 59.3 37 59.5
arahy.Tifrunner.gnm1.ann1.RSS8YY Arachis hypogaea HOM05D000140 ORTHO05D000087 6.8e-07 58.9 68 41.2
CSS0026801 Camellia sinensis var. sinensis HOM05D000140 ORTHO05D000087 6.8e-07 58.9 77 41.6
ECA240G0735 Erigeron canadensis HOM05D000140 ORTHO05D000087 6.8e-07 58.9 52 50.0
Lj6A393G46 Lonicera japonica HOM05D000140 ORTHO05D000087 6.8e-07 58.9 77 39.0
TPR.G33594 Trifolium pratense HOM05D000140 ORTHO05D000087 6.8e-07 58.9 59 42.4
TWI38G1200 Tripterygium wilfordii HOM05D000140 ORTHO05D000087 6.8e-07 58.9 37 59.5
Actinidia35852 Actinidia chinensis HOM05D000140 ORTHO05D000087 8.8e-07 58.5 77 42.9
SEGI_35398 Sequoiadendron giganteum HOM05D012667 ORTHO05D020263 8.8e-07 58.5 38 68.4
Dinv39802 Davidia involucrata HOM05D000140 ORTHO05D000087 1.2e-06 58.2 50 46.0
COL.COLO4_31560 Corchorus olitorius HOM05D000140 ORTHO05D000087 1.5e-06 57.8 37 59.5
Glyma.04G208450 Glycine max HOM05D000140 ORTHO05D000087 2.0e-06 57.4 83 39.8
Lsat_1_v5_gn_4_57360 Lactuca sativa HOM05D000140 ORTHO05D000087 2.0e-06 57.4 63 41.3
HanXRQChr02g0059061 Helianthus annuus HOM05D000140 ORTHO05D000087 2.6e-06 57.0 77 40.3
Nitab4.5_0001170g0240 Nicotiana tabacum HOM05D000140 ORTHO05D000087 2.6e-06 57.0 50 46.0
Rhsim09G0058800 Rhododendron simsii HOM05D000140 ORTHO05D000087 2.6e-06 57.0 73 38.4
SEGI_20074 Sequoiadendron giganteum HOM05D000140 ORTHO05D000087 2.6e-06 57.0 42 54.8
SGA_v2.0_scaffold69G23245 Striga asiatica HOM05D000140 ORTHO05D020263 2.6e-06 57.0 75 30.7
TWI31G1127 Tripterygium wilfordii HOM05D000140 ORTHO05D000087 2.6e-06 57.0 83 34.9
A04p25310 Brassica napus HOM05D000140 ORTHO05D000087 3.4e-06 56.6 75 37.3
BraA04t18034Z Brassica rapa HOM05D000140 ORTHO05D000087 3.4e-06 56.6 75 37.3
CARHR126750 Cardamine hirsuta HOM05D000140 ORTHO05D000087 3.4e-06 56.6 77 39.0
Lj6C393G5 Lonicera japonica HOM05D000140 ORTHO05D000087 3.4e-06 56.6 77 37.7
SEGI_11178 Sequoiadendron giganteum HOM05D000140 ORTHO05D000087 3.4e-06 56.6 85 37.6
SEGI_18143 Sequoiadendron giganteum HOM05D000003 ORTHO05D000004 3.4e-06 56.6 38 57.9
ATR0763G269 Amborella trichopoda HOM05D000140 ORTHO05D000087 4.4e-06 56.2 58 39.7
AUR62006882 Chenopodium quinoa HOM05D000140 ORTHO05D000087 4.4e-06 56.2 80 38.8
Migut.M01198 Erythranthe guttata HOM05D000140 ORTHO05D000087 4.4e-06 56.2 76 32.9
Eucgr.D00703 Eucalyptus grandis HOM05D000140 ORTHO05D000087 4.4e-06 56.2 41 51.2
Lsat_1_v5_gn_4_57380 Lactuca sativa HOM05D000140 ORTHO05D000087 4.4e-06 56.2 57 43.9
MBI02_g10551_MAGBIO Magnolia biondii HOM05D000140 ORTHO05D000087 4.4e-06 56.2 64 39.1
PSO017G5183 Papaver somniferum HOM05D000140 ORTHO05D000087 4.4e-06 56.2 63 39.7
SEGI_06815 Sequoiadendron giganteum HOM05D000617 ORTHO05D000478 4.4e-06 56.2 50 50.0
BcaB06g28635 Brassica carinata HOM05D000140 ORTHO05D000087 5.7e-06 55.8 68 39.7
Nitab4.5_0001652g0130 Nicotiana tabacum HOM05D000140 ORTHO05D000087 5.7e-06 55.8 78 38.5
Sc19g0007060 Simmondsia chinensis HOM05D000140 ORTHO05D000087 5.7e-06 55.8 76 36.8
Sc19g0007340 Simmondsia chinensis HOM05D000140 ORTHO05D000087 5.7e-06 55.8 76 36.8
Solyc09g092160.2 Solanum lycopersicum HOM05D000140 ORTHO05D000087 5.7e-06 55.8 77 36.4
Sopen09g035040 Solanum pennellii HOM05D000140 ORTHO05D000087 5.7e-06 55.8 77 36.4
PGSC0003DMG400026430 Solanum tuberosum HOM05D000140 ORTHO05D000087 5.7e-06 55.8 77 37.7
VMungo1383G1168 Vigna mungo HOM05D000140 ORTHO05D010195 5.7e-06 55.8 82 37.8
Atru.chr10.1990 Acer truncatum HOM05D000140 ORTHO05D000087 7.5e-06 55.5 56 44.6
Atru.chr4.1606 Acer truncatum HOM05D000140 ORTHO05D000087 7.5e-06 55.5 75 36.0
CAN.G490.19 Capsicum annuum HOM05D000140 ORTHO05D000087 7.5e-06 55.5 57 43.9
AUR62020842 Chenopodium quinoa HOM05D000140 ORTHO05D000087 7.5e-06 55.5 76 35.5
DCAR_030816 Daucus carota HOM05D000140 ORTHO05D000087 7.5e-06 55.5 81 37.0
Gohir.A10G019900 Gossypium hirsutum HOM05D000140 ORTHO05D000087 7.5e-06 55.5 37 56.8
SEGI_17202 Sequoiadendron giganteum HOM05D002483 ORTHO05D003728 7.5e-06 55.5 31 80.6
THA.LOC104801021 Tarenaya hassleriana HOM05D000140 ORTHO05D000087 7.5e-06 55.5 78 34.6
TAR362G0239 Trochodendron aralioides HOM05D000140 ORTHO05D000087 7.5e-06 55.5 79 38.0
TAR629G3307 Trochodendron aralioides HOM05D000140 ORTHO05D000087 7.5e-06 55.5 64 40.6
vmacro00451 Vaccinium macrocarpon HOM05D000140 ORTHO05D000087 7.5e-06 55.5 77 39.0
VMungo0464G0882 Vigna mungo HOM05D000140 ORTHO05D010195 7.5e-06 55.5 82 39.0
AL4G28310 Arabidopsis lyrata HOM05D000140 ORTHO05D000087 9.8e-06 55.1 75 38.7
EL10Ac3g07472 Beta vulgaris HOM05D000140 ORTHO05D000087 9.8e-06 55.1 78 34.6
AUR62000534 Chenopodium quinoa HOM05D000140 ORTHO05D000087 9.8e-06 55.1 80 37.5
AUR62018574 Chenopodium quinoa HOM05D000140 ORTHO05D000087 9.8e-06 55.1 76 34.2
Gohir.D10G020700 Gossypium hirsutum HOM05D000140 ORTHO05D000087 9.8e-06 55.1 37 56.8
Gorai.011G021800 Gossypium raimondii HOM05D000140 ORTHO05D000087 9.8e-06 55.1 37 56.8
Nitab4.5_0003676g0060 Nicotiana tabacum HOM05D000140 ORTHO05D000087 9.8e-06 55.1 50 44.0
Nitab4.5_0004347g0020 Nicotiana tabacum HOM05D000140 ORTHO05D000087 9.8e-06 55.1 78 38.5
Hund24399 Selenicereus undatus HOM05D000140 ORTHO05D000087 9.8e-06 55.1 76 38.2


User provided reference genes

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