Gene: COL.COLO4_12094
General Information
Structural Information
- Species Corchorus olitorius
- Gene Identifier COL.COLO4_12094
- Transcript Identifier COL.rna10886
- Gene Type Coding gene
- Location AWUE01014823.1 : 103439-110875 : negative
Gene Family Information
- ID HOM05D000140
- #Genes/#Species 2610/97
- Phylogenetic origin
- ID ORTHO05D000087
- #Genes/#Species 2327/96
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid rna10886
- GenBank OMP01194.1
- id gene12066
- gene_name COLO4_12094
- uniprot A0A1R3K287
Descriptions
- Description hypothetical protein
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0008152 | IEA | GOA Database | metabolic process | |
| GO:0005975 | IEA | GOA Database | carbohydrate metabolic process | |
| GO:0005975 | IEA | InterPro | carbohydrate metabolic process | |
| GO:0080167 | ISO | PLAZA Integrative Orthology | response to karrikin | AT5G63810 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0004565 | IEA | GOA Database | beta-galactosidase activity | |
| GO:0016798 | IEA | GOA Database | hydrolase activity, acting on glycosyl bonds | |
| GO:0016787 | IEA | GOA Database | hydrolase activity | |
| GO:0004553 | IEA | GOA Database | hydrolase activity, hydrolyzing O-glycosyl compounds | |
| GO:0004553 | IEA | InterPro | hydrolase activity, hydrolyzing O-glycosyl compounds | |
| GO:0030246 | IEA | GOA Database | carbohydrate binding | |
| GO:0030246 | IEA | InterPro | carbohydrate binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0048046 | IEA | GOA Database | apoplast | |
| GO:0005576 | IEA | GOA Database | extracellular region | |
| GO:0005618 | ISO | PLAZA Integrative Orthology | cell wall | AT2G28470 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR008979 | Galactose-binding-like domain superfamily |
| IPR017853 | Glycoside hydrolase superfamily |
| IPR031330 | Glycoside hydrolase 35, catalytic domain |
| IPR043159 | D-galactoside/L-rhamnose binding SUEL lectin domain superfamily |
| IPR001944 | Glycoside hydrolase, family 35 |
| IPR000922 | D-galactoside/L-rhamnose binding SUEL lectin domain |
| IPR041392 | Beta-galactosidase, beta-sandwich domain |
| Mapman id | Description |
|---|---|
| 21.2.1.2.4 | Cell wall organisation.hemicellulose.xyloglucan.modification and degradation.1,2-beta-galactosidase |