Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_00270 Sequoiadendron giganteum HOM05D005087 ORTHO05D006427 2.3e-90 335.5 165 100.0
SEGI_29436 Sequoiadendron giganteum HOM05D005087 ORTHO05D006427 2.2e-56 222.6 158 73.4
Mapoly0007s0066 Marchantia polymorpha HOM05D005087 ORTHO05D006427 4.1e-47 191.8 124 71.0
MBI11_g23277_MAGBIO Magnolia biondii HOM05D005087 ORTHO05D006427 4.6e-46 188.3 120 76.7
CANSAT80G0443 Cannabis sativa HOM05D005087 ORTHO05D006427 6.0e-46 188.0 123 71.5
ATR0626G229 Amborella trichopoda HOM05D005087 ORTHO05D006427 7.8e-46 187.6 120 75.8
Cfa022636 Carpinus fangiana HOM05D005087 ORTHO05D006427 1.7e-45 186.4 121 72.7
Haze_03133 Corylus avellana HOM05D005087 ORTHO05D006427 1.7e-45 186.4 121 72.7
Haze_03136 Corylus avellana HOM05D005087 ORTHO05D006427 1.7e-45 186.4 121 72.7
Dinv09311 Davidia involucrata HOM05D005087 ORTHO05D006427 2.3e-45 186.0 122 75.4
PGR031G1517 Punica granatum HOM05D005087 ORTHO05D006427 2.3e-45 186.0 122 73.0
arahy.Tifrunner.gnm1.ann1.1A5L99 Arachis hypogaea HOM05D005087 ORTHO05D006427 3.9e-45 185.3 126 70.6
Actinidia21541 Actinidia chinensis HOM05D005087 ORTHO05D006427 6.6e-45 184.5 121 70.2
Lju99A9T21 Lonicera japonica HOM05D005087 ORTHO05D006427 6.6e-45 184.5 114 77.2
TWI09G0473 Tripterygium wilfordii HOM05D005087 ORTHO05D006427 8.6e-45 184.1 124 71.0
THA.LOC104819098 Tarenaya hassleriana HOM05D005087 ORTHO05D006427 1.1e-44 183.7 118 72.9
Hma1.2p1_0685F.1_g203130 Hydrangea macrophylla HOM05D005087 ORTHO05D006427 1.5e-44 183.3 121 72.7
Hma1.2p1_0685F.1_g203140 Hydrangea macrophylla HOM05D005087 ORTHO05D006427 1.5e-44 183.3 121 72.7
Rhsim01G0127000 Rhododendron simsii HOM05D005087 ORTHO05D006427 1.5e-44 183.3 126 71.4
arahy.Tifrunner.gnm1.ann1.JJ1LEU Arachis hypogaea HOM05D005087 ORTHO05D006427 1.9e-44 183.0 126 69.8
MELO3C023581.2 Cucumis melo HOM05D005087 ORTHO05D006427 1.9e-44 183.0 126 67.5
CsaV3_7G030750 Cucumis sativus L. HOM05D005087 ORTHO05D006427 1.9e-44 183.0 126 67.5
ClCG09G004390 Citrullus lanatus HOM05D005087 ORTHO05D006427 3.3e-44 182.2 126 67.5
Lj9C640G8 Lonicera japonica HOM05D005087 ORTHO05D006427 4.3e-44 181.8 113 77.0
Sc10g0000340 Simmondsia chinensis HOM05D005087 ORTHO05D006427 4.3e-44 181.8 128 71.1
GSVIVG01032195001 Vitis vinifera HOM05D005087 ORTHO05D006427 4.3e-44 181.8 120 75.0
Sabra16G0161000 Salix brachista HOM05D005087 ORTHO05D006427 5.6e-44 181.4 122 73.0
TPR.G14572 Trifolium pratense HOM05D005087 ORTHO05D006427 5.6e-44 181.4 126 69.0
AT5G15920 Arabidopsis thaliana HOM05D005087 ORTHO05D006427 7.3e-44 181.0 118 71.2
Duzib177G0717 Durio zibethinus HOM05D005087 ORTHO05D006427 7.3e-44 181.0 121 72.7
QL04p009808 Quercus lobata HOM05D005087 ORTHO05D006427 7.3e-44 181.0 122 72.1
Gohir.A13G157100 Gossypium hirsutum HOM05D005087 ORTHO05D006427 9.5e-44 180.6 121 72.7
Atru.chr11.2578 Acer truncatum HOM05D005087 ORTHO05D006427 1.2e-43 180.3 118 70.3
Aa31LG11G13680 Aethionema arabicum HOM05D005087 ORTHO05D006427 1.2e-43 180.3 112 73.2
Lj3g0015731 Lotus japonicus HOM05D005087 ORTHO05D006427 1.2e-43 180.3 126 69.0
Medtr3g033470 Medicago truncatula HOM05D005087 ORTHO05D006427 1.2e-43 180.3 126 69.8
Potri.001G262600 Populus trichocarpa HOM05D005087 ORTHO05D006427 1.2e-43 180.3 122 73.0
CAN.G219.75 Capsicum annuum HOM05D005087 ORTHO05D006427 1.6e-43 179.9 123 69.9
Carub.0006s1411 Capsella rubella HOM05D005087 ORTHO05D006427 2.1e-43 179.5 118 69.5
CARHR197390 Cardamine hirsuta HOM05D005087 ORTHO05D006427 2.1e-43 179.5 118 70.3
Gohir.D13G161900 Gossypium hirsutum HOM05D005087 ORTHO05D006427 2.1e-43 179.5 121 71.9
Gorai.013G183900 Gossypium raimondii HOM05D005087 ORTHO05D006427 2.1e-43 179.5 121 71.9
Nitab4.5_0002388g0080 Nicotiana tabacum HOM05D005087 ORTHO05D006427 2.1e-43 179.5 118 72.9
Glyma.20G198300 Glycine max HOM05D005087 ORTHO05D006427 2.8e-43 179.1 126 70.6
Lalb_Chr04g0263871 Lupinus albus HOM05D005087 ORTHO05D006427 2.8e-43 179.1 126 68.3
Nitab4.5_0000707g0070 Nicotiana tabacum HOM05D005087 ORTHO05D006427 2.8e-43 179.1 118 72.9
Thhalv10012535m.g Eutrema salsugineum HOM05D005087 ORTHO05D006427 3.6e-43 178.7 118 70.3
Sp6g28190 Schrenkiella parvula HOM05D005087 ORTHO05D006427 3.6e-43 178.7 118 71.2
HPP92_016892 Vanilla planifolia HOM05D001496 ORTHO05D007453 3.6e-43 178.7 129 69.0
AL6G26800 Arabidopsis lyrata HOM05D005087 ORTHO05D006427 4.7e-43 178.3 118 70.3
Lsat_1_v5_gn_1_103161 Lactuca sativa HOM05D005087 ORTHO05D006427 4.7e-43 178.3 121 71.9
Solyc01g087720.4 Solanum lycopersicum HOM05D005087 ORTHO05D006427 4.7e-43 178.3 118 72.0
Sopen01g034670 Solanum pennellii HOM05D005087 ORTHO05D006427 4.7e-43 178.3 118 72.0
Ciclev10030582m.g Citrus clementina HOM05D005087 ORTHO05D006427 6.2e-43 177.9 121 69.4
ECA248G2604 Erigeron canadensis HOM05D005087 ORTHO05D006427 6.2e-43 177.9 122 71.3
Thecc.05G218700 Theobroma cacao HOM05D005087 ORTHO05D006427 6.2e-43 177.9 121 71.9
TAR623G1255 Trochodendron aralioides HOM05D005087 ORTHO05D006427 6.2e-43 177.9 121 72.7
CiPaw.14G002700 Carya illinoinensis HOM05D005087 ORTHO05D006427 8.1e-43 177.6 121 69.4
HanXRQChr01g0007751 Helianthus annuus HOM05D005087 ORTHO05D006427 8.1e-43 177.6 121 70.2
Phvul.002G285500 Phaseolus vulgaris HOM05D005087 ORTHO05D006427 1.1e-42 177.2 126 69.0
vmacro21195 Vaccinium macrocarpon HOM05D005087 ORTHO05D006427 1.1e-42 177.2 111 73.9
Psat6g018320 Pisum sativum HOM05D005087 ORTHO05D006427 1.4e-42 176.8 126 69.8
SHI04082 Sapria himalayana HOM05D005087 ORTHO05D006427 1.4e-42 176.8 112 73.2
TAR623G1215 Trochodendron aralioides HOM05D005087 ORTHO05D006427 1.8e-42 176.4 120 72.5
A03p07470 Brassica napus HOM05D005087 ORTHO05D006427 2.3e-42 176.0 118 68.6
Hund09862 Selenicereus undatus HOM05D005087 ORTHO05D006427 2.3e-42 176.0 118 71.2
C03p08670 Brassica napus HOM05D005087 ORTHO05D006427 3.1e-42 175.6 112 72.3
BolC3t13367H Brassica oleracea HOM05D005087 ORTHO05D006427 3.1e-42 175.6 112 72.3
BraA03t10076Z Brassica rapa HOM05D005087 ORTHO05D006427 3.1e-42 175.6 112 72.3
Ca_14518_v3 Cicer arietinum L. HOM05D005087 ORTHO05D006427 6.8e-42 174.5 125 68.8
Eucgr.G03334 Eucalyptus grandis HOM05D005087 ORTHO05D006427 6.8e-42 174.5 122 69.7
Prupe.2G022000 Prunus persica HOM05D005087 ORTHO05D006427 6.8e-42 174.5 121 69.4
Migut.B01270 Erythranthe guttata HOM05D005087 ORTHO05D006427 1.2e-41 173.7 126 67.5
Medtr5g036370 Medicago truncatula HOM05D005087 ORTHO05D006427 1.5e-41 173.3 126 65.1
Lj3g0013327 Lotus japonicus HOM05D005087 ORTHO05D006427 2.0e-41 172.9 120 66.7
Medtr4g115050 Medicago truncatula HOM05D005087 ORTHO05D006427 2.0e-41 172.9 113 72.6
MD07G1021900 Malus domestica HOM05D005087 ORTHO05D006427 2.6e-41 172.6 118 68.6
PSO210G7144 Papaver somniferum HOM05D005087 ORTHO05D006427 2.6e-41 172.6 130 63.8
MSTRG.17010 Avicennia marina HOM05D005087 ORTHO05D006427 5.8e-41 171.4 126 68.3
AagrBONN_evm.TU.Sc2ySwM_344.2054 Anthoceros agrestis HOM05D005087 ORTHO05D006427 7.6e-41 171.0 120 67.5
Cc00_g23000 Coffea canephora HOM05D005087 ORTHO05D006427 7.6e-41 171.0 121 67.8
SGA_v2.0_scaffold119G32758 Striga asiatica HOM05D005087 ORTHO05D006427 9.9e-41 170.6 126 65.9
AUR62009415 Chenopodium quinoa HOM05D005087 ORTHO05D006427 1.7e-40 169.9 118 68.6
Aqoxy1G00327 Aquilegia oxysepala HOM05D005087 ORTHO05D006427 2.2e-40 169.5 112 70.5
AUR62023092 Chenopodium quinoa HOM05D005087 ORTHO05D006427 2.2e-40 169.5 118 68.6
Zm00001eb225540 Zea mays HOM05D005087 ORTHO05D006427 2.2e-40 169.5 112 70.5
Pp3c24_4940 Physcomitrium patens HOM05D005087 ORTHO05D006427 4.9e-40 168.3 119 70.6
RcHm_v2.0_Chr1g0317911 Rosa chinensis HOM05D005087 ORTHO05D006427 4.9e-40 168.3 121 67.8
SalBow5G0870 Salvia bowleyana HOM05D005087 ORTHO05D006427 4.9e-40 168.3 128 64.8
SalBow5G2001 Salvia bowleyana HOM05D005087 ORTHO05D006427 4.9e-40 168.3 128 64.8
EL10Ac2g04364 Beta vulgaris HOM05D005087 ORTHO05D006427 6.4e-40 167.9 129 64.3
FvH4_7g01640 Fragaria vesca HOM05D005087 ORTHO05D006427 1.9e-39 166.4 122 68.0
FAN06G3789 Fragaria x ananassa HOM05D005087 ORTHO05D006427 1.9e-39 166.4 122 68.0
FAN03G0563 Fragaria x ananassa HOM05D005087 ORTHO05D006427 3.2e-39 165.6 122 68.0
Peaxi162Scf00694g00319 Petunia axillaris HOM05D005087 ORTHO05D006427 3.2e-39 165.6 106 74.5
PSO339G3397 Papaver somniferum HOM05D005087 ORTHO05D006427 4.1e-39 165.2 121 65.3
FAN10G1149 Fragaria x ananassa HOM05D005087 ORTHO05D006427 5.4e-39 164.9 122 67.2
Os05g0596600 Oryza sativa ssp. japonica HOM05D005087 ORTHO05D006427 9.2e-39 164.1 109 69.7
Hund09856 Selenicereus undatus HOM05D005087 ORTHO05D006427 1.2e-38 163.7 117 66.7
SMO143G0265 Selaginella moellendorffii HOM05D005087 ORTHO05D006427 1.6e-38 163.3 104 71.2
DCAR_029700 Daucus carota HOM05D005087 ORTHO05D006427 7.8e-38 161.0 121 65.3
CSS0029256 Camellia sinensis var. sinensis HOM05D005087 ORTHO05D006427 9.6e-36 154.1 103 71.8
Oeu049481.1 Olea europaea HOM05D005087 ORTHO05D006427 1.6e-35 153.3 104 72.1
Manes.10G136400 Manihot esculenta HOM05D005087 ORTHO05D006427 6.9e-34 147.9 99 70.7
BcaB01g05014 Brassica carinata HOM05D005087 ORTHO05D006427 8.9e-34 147.5 112 64.3
CDE09G1121 Ceratophyllum demersum HOM05D005087 ORTHO05D006427 1.7e-32 143.3 93 76.3
PRCOL_00002930 Prasinoderma coloniale HOM05D005087 ORTHO05D006427 5.4e-31 138.3 116 56.9
Os11g0572900 Oryza sativa ssp. japonica HOM05D005087 ORTHO05D006427 8.7e-29 131.0 125 55.2
MCO04G035 Micromonas commoda HOM05D005087 ORTHO05D006427 5.6e-28 128.3 109 50.5
Cfa027028 Carpinus fangiana HOM05D005087 ORTHO05D006427 2.1e-22 109.8 110 50.0
unitig_22.g5433 Utricularia gibba HOM05D005087 ORTHO05D006427 6.2e-19 98.2 58 75.9
CBR_g88572 Chara braunii HOM05D005087 ORTHO05D000002 5.8e-17 91.7 66 60.6
Os11g0577350 Oryza sativa ssp. japonica HOM05D005087 ORTHO05D006427 5.8e-17 91.7 61 68.9
Cre10.g440200 Chlamydomonas reinhardtii HOM05D005087 ORTHO05D006427 7.6e-17 91.3 103 44.7
Nn7g36293 Nelumbo nucifera HOM05D005087 ORTHO05D006427 9.6e-12 74.3 52 73.1
Cpa.g.sc125.40 Carica papaya HOM05D005087 ORTHO05D006427 2.1e-11 73.2 52 67.3
Haze_26632 Corylus avellana HOM05D004178 ORTHO05D005204 8.1e-11 71.2 105 33.3
Actinidia13977 Actinidia chinensis HOM05D005087 ORTHO05D006427 4.0e-10 68.9 41 75.6
Cre10.g440300 Chlamydomonas reinhardtii HOM05D005087 ORTHO05D006427 4.5e-09 65.5 94 35.1
Os11g0577300 Oryza sativa ssp. japonica HOM05D005087 ORTHO05D006427 1.0e-08 64.3 52 59.6
MCO11G708 Micromonas commoda HOM05D004178 ORTHO05D005204 1.4e-07 60.5 115 28.7
Cfa025728 Carpinus fangiana HOM05D004178 ORTHO05D005204 4.2e-07 58.9 83 34.9
PGR042G0822 Punica granatum HOM05D004178 ORTHO05D005204 4.2e-07 58.9 106 31.1
Eucgr.A02900 Eucalyptus grandis HOM05D004178 ORTHO05D005204 1.6e-06 57.0 106 28.3
Lj1C978G4 Lonicera japonica HOM05D004178 ORTHO05D005204 1.6e-06 57.0 106 29.2
Manes.06G133600 Manihot esculenta HOM05D004178 ORTHO05D005204 1.6e-06 57.0 106 27.4
Mapoly0003s0057 Marchantia polymorpha HOM05D004178 ORTHO05D005204 2.1e-06 56.6 112 32.1
ECA232G0935 Erigeron canadensis HOM05D004178 ORTHO05D005204 2.7e-06 56.2 82 29.3
HanXRQChr01g0028141 Helianthus annuus HOM05D004178 ORTHO05D005204 2.7e-06 56.2 82 29.3
EL10Ac3g05856 Beta vulgaris HOM05D004178 ORTHO05D005204 3.5e-06 55.8 106 27.4
AL6G18000 Arabidopsis lyrata HOM05D004178 ORTHO05D005204 4.6e-06 55.5 100 29.0
BolC2t06288H Brassica oleracea HOM05D004178 ORTHO05D005204 4.6e-06 55.5 114 26.3
Cre12.g525050 Chlamydomonas reinhardtii HOM05D004178 ORTHO05D005204 4.6e-06 55.5 135 31.9
Aa31LG11G1940 Aethionema arabicum HOM05D004178 ORTHO05D005204 6.0e-06 55.1 120 26.7
DCAR_014618 Daucus carota HOM05D004178 ORTHO05D005204 6.0e-06 55.1 106 28.3
Dinv06570 Davidia involucrata HOM05D004178 ORTHO05D005204 6.0e-06 55.1 106 28.3
Medtr4g061050 Medicago truncatula HOM05D004178 ORTHO05D005204 6.0e-06 55.1 106 26.4
TWI14G1279 Tripterygium wilfordii HOM05D004178 ORTHO05D005204 6.0e-06 55.1 100 29.0
Oeu021706.1 Olea europaea HOM05D004178 ORTHO05D005204 7.9e-06 54.7 113 26.5


User provided reference genes

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