Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0246200 Rhododendron simsii HOM05D001978 ORTHO05D003036 4.8e-111 404.4 196 100.0
Rhsim07G0059400 Rhododendron simsii HOM05D001978 ORTHO05D003036 8.4e-55 217.6 270 53.0
Actinidia06286 Actinidia chinensis HOM05D001978 ORTHO05D003036 8.1e-50 201.1 247 53.4
vmacro13704 Vaccinium macrocarpon HOM05D001978 ORTHO05D003036 8.1e-50 201.1 244 54.9
GSVIVG01001441001 Vitis vinifera HOM05D001978 ORTHO05D003036 1.7e-47 193.4 244 51.2
Actinidia19428 Actinidia chinensis HOM05D001978 ORTHO05D003036 1.2e-45 187.2 246 50.8
Dinv07425 Davidia involucrata HOM05D001978 ORTHO05D003036 1.0e-44 184.1 242 48.3
vmacro21140 Vaccinium macrocarpon HOM05D001978 ORTHO05D003036 3.3e-43 179.1 246 48.4
Haze_03128 Corylus avellana HOM05D001978 ORTHO05D003036 1.4e-41 173.7 270 43.7
Migut.B01256 Erythranthe guttata HOM05D001978 ORTHO05D003036 3.1e-41 172.6 246 47.6
Cfa022633 Carpinus fangiana HOM05D001978 ORTHO05D003036 4.0e-41 172.2 264 43.9
QL04p043590 Quercus lobata HOM05D001978 ORTHO05D003036 6.9e-41 171.4 237 47.7
CiPaw.14G004000 Carya illinoinensis HOM05D001978 ORTHO05D003036 9.0e-41 171.0 263 44.1
CSS0034960 Camellia sinensis var. sinensis HOM05D001978 ORTHO05D003036 1.2e-40 170.6 246 48.4
Duzib133G0356 Durio zibethinus HOM05D001978 ORTHO05D003036 2.6e-40 169.5 251 46.6
Ciclev10030570m.g Citrus clementina HOM05D001978 ORTHO05D003036 3.4e-40 169.1 242 47.1
QL04p010499 Quercus lobata HOM05D001978 ORTHO05D003036 3.4e-40 169.1 264 45.1
Duzib268G1826 Durio zibethinus HOM05D001978 ORTHO05D003036 4.5e-40 168.7 251 45.4
MBI13_g11939_MAGBIO Magnolia biondii HOM05D001978 ORTHO05D003036 7.6e-40 167.9 243 47.3
TWI53G0392 Tripterygium wilfordii HOM05D001978 ORTHO05D003036 9.9e-40 167.5 245 47.3
Hma1.2p1_0685F.1_g203310 Hydrangea macrophylla HOM05D001978 ORTHO05D003036 1.7e-39 166.8 247 45.3
Gohir.D12G103000 Gossypium hirsutum HOM05D001978 ORTHO05D003036 2.2e-39 166.4 250 46.0
Atru.chr11.2543 Acer truncatum HOM05D001978 ORTHO05D003036 2.9e-39 166.0 275 41.5
SGA_v2.0_scaffold119G32768 Striga asiatica HOM05D001978 ORTHO05D003036 2.9e-39 166.0 239 47.7
Gorai.008G112200 Gossypium raimondii HOM05D001978 ORTHO05D003036 4.9e-39 165.2 250 45.6
Lj7C575G6 Lonicera japonica HOM05D001978 ORTHO05D003036 6.4e-39 164.9 305 38.7
MSTRG.17003 Avicennia marina HOM05D001978 ORTHO05D003036 1.1e-38 164.1 246 45.9
CiPaw.13G008500 Carya illinoinensis HOM05D001978 ORTHO05D003036 1.1e-38 164.1 263 43.3
Cc00_g06050 Coffea canephora HOM05D001978 ORTHO05D003036 1.1e-38 164.1 265 42.3
MSTRG.20555 Avicennia marina HOM05D001978 ORTHO05D003036 1.4e-38 163.7 249 45.0
TAR633G0096 Trochodendron aralioides HOM05D001978 ORTHO05D003036 1.9e-38 163.3 268 42.9
MD02G1300000 Malus domestica HOM05D001978 ORTHO05D003036 4.2e-38 162.2 241 43.6
Prupe.2G024600 Prunus persica HOM05D001978 ORTHO05D003036 6.0e-37 158.3 243 44.0
Oeu006547.2 Olea europaea HOM05D001978 ORTHO05D003036 7.9e-37 157.9 245 44.5
Manes.10G135100 Manihot esculenta HOM05D001978 ORTHO05D003036 1.3e-36 157.1 243 44.0
Thecc.01G404200 Theobroma cacao HOM05D001978 ORTHO05D003036 1.3e-36 157.1 250 45.2
Oeu014599.1 Olea europaea HOM05D001978 ORTHO05D003036 1.8e-36 156.8 237 45.1
Gohir.A08G141300 Gossypium hirsutum HOM05D001978 ORTHO05D003036 3.0e-36 156.0 250 44.4
Gohir.D08G162400 Gossypium hirsutum HOM05D001978 ORTHO05D003036 5.1e-36 155.2 250 44.4
Gorai.004G168700 Gossypium raimondii HOM05D001978 ORTHO05D003036 5.1e-36 155.2 250 44.4
MD07G1024900 Malus domestica HOM05D001978 ORTHO05D003036 5.1e-36 155.2 238 43.3
SalBow5G1268 Salvia bowleyana HOM05D001978 ORTHO05D003036 5.1e-36 155.2 246 43.9
SalBow5G4104 Salvia bowleyana HOM05D001978 ORTHO05D003036 5.1e-36 155.2 246 43.9
Potri.001G260900 Populus trichocarpa HOM05D001978 ORTHO05D003036 6.7e-36 154.8 245 43.7
Cpa.g.sc125.59 Carica papaya HOM05D001978 ORTHO05D003036 1.1e-35 154.1 241 46.1
DCAR_031813 Daucus carota HOM05D001978 ORTHO05D003036 1.1e-35 154.1 243 44.4
Gohir.A12G100200 Gossypium hirsutum HOM05D001978 ORTHO05D003036 1.1e-35 154.1 250 43.2
TWI73G0465 Tripterygium wilfordii HOM05D001978 ORTHO05D003036 1.1e-35 154.1 245 45.7
Hund16631 Selenicereus undatus HOM05D001978 ORTHO05D003036 1.5e-35 153.7 244 44.7
TWI09G1049 Tripterygium wilfordii HOM05D001978 ORTHO05D003036 1.9e-35 153.3 246 45.9
Gohir.A08G055600 Gossypium hirsutum HOM05D001978 ORTHO05D003036 3.3e-35 152.5 251 43.8
Gohir.D08G064900 Gossypium hirsutum HOM05D001978 ORTHO05D003036 2.8e-34 149.4 251 43.8
Gorai.004G067200 Gossypium raimondii HOM05D001978 ORTHO05D003036 2.8e-34 149.4 251 43.8
Ah.10g038540 Amaranthus hybridus HOM05D001978 ORTHO05D003036 4.8e-34 148.7 251 41.4
EL10Ac2g04382 Beta vulgaris HOM05D001978 ORTHO05D003036 6.2e-34 148.3 247 42.9
Nn7g36348 Nelumbo nucifera HOM05D001978 ORTHO05D003036 6.2e-34 148.3 245 43.7
QL06p019642 Quercus lobata HOM05D001978 ORTHO05D003036 1.4e-33 147.1 227 44.9
Manes.07G011900 Manihot esculenta HOM05D001978 ORTHO05D003036 6.9e-33 144.8 243 43.6
Cfa010830 Carpinus fangiana HOM05D001978 ORTHO05D003036 1.5e-32 143.7 224 43.3
arahy.Tifrunner.gnm1.ann1.18AW2L Arachis hypogaea HOM05D001978 ORTHO05D003036 3.4e-32 142.5 267 41.6
COL.COLO4_12328 Corchorus olitorius HOM05D001978 ORTHO05D003036 3.4e-32 142.5 247 43.7
Rhsim01G0124800 Rhododendron simsii HOM05D001978 ORTHO05D003036 1.7e-31 140.2 281 38.1
Potri.009G055400 Populus trichocarpa HOM05D001978 ORTHO05D003036 2.2e-31 139.8 233 41.6
Sabra16G0159500 Salix brachista HOM05D001978 ORTHO05D003036 2.9e-31 139.4 240 40.8
Rhsim07G0127800 Rhododendron simsii HOM05D001978 ORTHO05D003036 3.8e-31 139.0 167 55.1
AUR62009427 Chenopodium quinoa HOM05D001978 ORTHO05D003036 6.4e-31 138.3 244 41.8
SalBow6G2677 Salvia bowleyana HOM05D001978 ORTHO05D003036 8.4e-31 137.9 229 42.4
ATR0057G108 Amborella trichopoda HOM05D001978 ORTHO05D003036 1.1e-30 137.5 247 42.1
DCAR_022370 Daucus carota HOM05D001978 ORTHO05D003036 1.4e-30 137.1 274 39.4
AUR62023105 Chenopodium quinoa HOM05D001978 ORTHO05D003036 2.5e-30 136.3 244 41.8
Nn2g15171 Nelumbo nucifera HOM05D001978 ORTHO05D003036 3.2e-30 136.0 239 43.1
RcHm_v2.0_Chr1g0318481 Rosa chinensis HOM05D001978 ORTHO05D003036 1.6e-29 133.7 238 42.0
CDE09G0202 Ceratophyllum demersum HOM05D001978 ORTHO05D003036 7.9e-29 131.3 234 43.2
Gohir.A11G073600 Gossypium hirsutum HOM05D001978 ORTHO05D003036 1.3e-28 130.6 272 39.0
Aqoxy2G04178 Aquilegia oxysepala HOM05D001978 ORTHO05D003036 1.8e-28 130.2 230 44.3
Sabra09G0040500 Salix brachista HOM05D001978 ORTHO05D003036 2.3e-28 129.8 269 37.5
Duzib138G1653 Durio zibethinus HOM05D001978 ORTHO05D003036 3.0e-28 129.4 220 42.7
PGR031G1837 Punica granatum HOM05D001978 ORTHO05D003036 3.9e-28 129.0 242 40.5
CAN.G909.18 Capsicum annuum HOM05D001978 ORTHO05D003036 6.7e-28 128.3 248 39.9
Dinv43400 Davidia involucrata HOM05D001978 ORTHO05D003036 6.7e-28 128.3 199 44.7
CSS0022031 Camellia sinensis var. sinensis HOM05D001978 ORTHO05D003036 8.7e-28 127.9 126 58.7
Sopen01g034910 Solanum pennellii HOM05D001978 ORTHO05D003036 8.7e-28 127.9 248 39.5
Lalb_Chr01g0000521 Lupinus albus HOM05D001978 ORTHO05D003036 1.5e-27 127.1 236 42.4
HanXRQChr16g0524831 Helianthus annuus HOM05D001978 ORTHO05D003036 2.5e-27 126.3 243 39.9
Psat7g158440 Pisum sativum HOM05D001978 ORTHO05D003036 4.3e-27 125.6 275 37.8
Ah.16g100700 Amaranthus hybridus HOM05D001978 ORTHO05D003036 5.6e-27 125.2 226 39.4
Lalb_Chr19g0140221 Lupinus albus HOM05D001978 ORTHO05D003036 5.6e-27 125.2 239 41.4
Solyc01g088020.3 Solanum lycopersicum HOM05D001978 ORTHO05D003036 5.6e-27 125.2 246 39.4
SGA_v2.0_scaffold5G02944 Striga asiatica HOM05D001978 ORTHO05D003036 5.6e-27 125.2 251 38.2
Sc14g0004930 Simmondsia chinensis HOM05D001978 ORTHO05D003036 7.4e-27 124.8 280 38.9
Lalb_Chr03g0024131 Lupinus albus HOM05D001978 ORTHO05D003036 9.6e-27 124.4 265 40.8
RhsimUnG0082500 Rhododendron simsii HOM05D001978 ORTHO05D003036 1.6e-26 123.6 167 50.9
TAR369G0424 Trochodendron aralioides HOM05D001978 ORTHO05D003036 2.8e-26 122.9 212 42.9
Peaxi162Scf01108g00213 Petunia axillaris HOM05D001978 ORTHO05D003036 4.8e-26 122.1 244 38.9
Eucgr.G03281 Eucalyptus grandis HOM05D001978 ORTHO05D003036 1.1e-25 120.9 266 38.7
VMungo1127G0961 Vigna mungo HOM05D001978 ORTHO05D003036 1.1e-25 120.9 240 40.8
MBI19_g16674_MAGBIO Magnolia biondii HOM05D001978 ORTHO05D003036 2.4e-25 119.8 228 40.8
Nitab4.5_0002888g0010 Nicotiana tabacum HOM05D001978 ORTHO05D003036 4.0e-25 119.0 246 39.0
Phvul.011G010400 Phaseolus vulgaris HOM05D001978 ORTHO05D003036 4.0e-25 119.0 240 41.2
Nitab4.5_0006695g0020 Nicotiana tabacum HOM05D001978 ORTHO05D003036 6.9e-25 118.2 247 38.1
CDE02G0774 Ceratophyllum demersum HOM05D001978 ORTHO05D003036 1.5e-24 117.1 266 37.6
Actinidia21535 Actinidia chinensis HOM05D001978 ORTHO05D003036 2.0e-24 116.7 126 54.0
arahy.Tifrunner.gnm1.ann1.T8W0FC Arachis hypogaea HOM05D001978 ORTHO05D003036 2.0e-24 116.7 268 38.1
THA.LOC104801971 Tarenaya hassleriana HOM05D001978 ORTHO05D003036 2.0e-24 116.7 228 41.2
FAN01G0983 Fragaria x ananassa HOM05D001978 ORTHO05D003036 3.4e-24 115.9 279 37.3
Medtr4g045577 Medicago truncatula HOM05D001978 ORTHO05D003036 3.4e-24 115.9 271 36.9
Sed0014499 Sechium edule HOM05D001978 ORTHO05D003036 3.4e-24 115.9 247 39.3
ClCG10G012130 Citrullus lanatus HOM05D001978 ORTHO05D003036 7.6e-24 114.8 248 39.1
Os07g0657200 Oryza sativa ssp. japonica HOM05D001978 ORTHO05D003036 7.6e-24 114.8 266 36.8
CANSAT80G0138 Cannabis sativa HOM05D001978 ORTHO05D003036 1.0e-23 114.4 269 35.7
Glyma.12G010300 Glycine max HOM05D001978 ORTHO05D003036 1.0e-23 114.4 236 39.0
HanXRQChr01g0015661 Helianthus annuus HOM05D001978 ORTHO05D003036 1.0e-23 114.4 239 38.1
TPR.G8350 Trifolium pratense HOM05D001978 ORTHO05D003036 1.0e-23 114.4 274 36.5
FAN03G2968 Fragaria x ananassa HOM05D001978 ORTHO05D003036 1.3e-23 114.0 225 40.9
CsaV3_3G031890 Cucumis sativus L. HOM05D001978 ORTHO05D003036 1.7e-23 113.6 244 39.8
MELO3C024002.2 Cucumis melo HOM05D001978 ORTHO05D003036 2.2e-23 113.2 247 38.9
Sc11g0009020 Simmondsia chinensis HOM05D001978 ORTHO05D003036 2.2e-23 113.2 223 40.8
Lj3g0007867 Lotus japonicus HOM05D001978 ORTHO05D003036 2.9e-23 112.8 262 37.8
Sp5g00090 Schrenkiella parvula HOM05D001978 ORTHO05D003036 2.9e-23 112.8 247 38.5
Ca_26319_v3 Cicer arietinum L. HOM05D001978 ORTHO05D003036 3.8e-23 112.5 277 37.2
FvH4_7g01850 Fragaria vesca HOM05D001978 ORTHO05D003036 3.8e-23 112.5 225 40.4
Gohir.D11G078201 Gossypium hirsutum HOM05D001978 ORTHO05D003036 3.8e-23 112.5 261 36.8
THA.LOC104823030 Tarenaya hassleriana HOM05D001978 ORTHO05D003036 4.9e-23 112.1 280 36.8
BraA09t40920Z Brassica rapa HOM05D001978 ORTHO05D003036 6.5e-23 111.7 246 39.4
A09p55130 Brassica napus HOM05D001978 ORTHO05D003036 8.4e-23 111.3 276 37.3
BolC8t51381H Brassica oleracea HOM05D001978 ORTHO05D003036 1.1e-22 110.9 275 37.1
FAN06G2210 Fragaria x ananassa HOM05D001978 ORTHO05D003036 1.1e-22 110.9 236 39.0
Lsat_1_v5_gn_1_101701 Lactuca sativa HOM05D001978 ORTHO05D003036 1.9e-22 110.2 268 35.1
C08p38070 Brassica napus HOM05D001978 ORTHO05D003036 2.5e-22 109.8 275 36.7
Aa31LG10G17320 Aethionema arabicum HOM05D001978 ORTHO05D003036 3.2e-22 109.4 240 37.1
BcaC07g40813 Brassica carinata HOM05D001978 ORTHO05D003036 3.2e-22 109.4 275 36.0
BcaC08g45262 Brassica carinata HOM05D001978 ORTHO05D003036 3.2e-22 109.4 257 38.5
Gorai.007G083600 Gossypium raimondii HOM05D001978 ORTHO05D003036 5.5e-22 108.6 261 35.2
Sed0016255 Sechium edule HOM05D001978 ORTHO05D003036 5.5e-22 108.6 248 38.3
Carub.0005s3007 Capsella rubella HOM05D001978 ORTHO05D003036 1.2e-21 107.5 242 38.0
Lsat_1_v5_gn_4_32040 Lactuca sativa HOM05D001978 ORTHO05D003036 2.1e-21 106.7 266 34.6
A09p55140 Brassica napus HOM05D001978 ORTHO05D003036 2.7e-21 106.3 275 36.4
Haze_03129 Corylus avellana HOM05D001978 ORTHO05D003036 4.6e-21 105.5 165 44.2
Glyma.09G226400 Glycine max HOM05D001978 ORTHO05D003036 7.9e-21 104.8 239 37.7
HPP92_001385 Vanilla planifolia HOM05D001978 ORTHO05D003036 2.3e-20 103.2 262 36.3
CARHR291510 Cardamine hirsuta HOM05D001978 ORTHO05D003036 3.0e-20 102.8 228 38.2
C04p29860 Brassica napus HOM05D001978 ORTHO05D003036 5.1e-20 102.1 246 37.4
BolC4t24517H Brassica oleracea HOM05D001978 ORTHO05D003036 5.1e-20 102.1 246 37.4
C06p28640 Brassica napus HOM05D001978 ORTHO05D003036 6.7e-20 101.7 234 37.2
BolC6t38032H Brassica oleracea HOM05D001978 ORTHO05D003036 6.7e-20 101.7 234 37.2
SGA_v2.0_scaffold4G02473 Striga asiatica HOM05D001978 ORTHO05D003036 6.7e-20 101.7 228 38.6
PSO675G4117 Papaver somniferum HOM05D001978 ORTHO05D003036 8.7e-20 101.3 274 34.7
A07p26260 Brassica napus HOM05D001978 ORTHO05D003036 2.5e-19 99.8 243 35.4
BraA07t30269Z Brassica rapa HOM05D001978 ORTHO05D003036 2.5e-19 99.8 243 35.4
PSO732G0135 Papaver somniferum HOM05D001978 ORTHO05D003036 2.5e-19 99.8 263 35.4
ECA236G3334 Erigeron canadensis HOM05D001978 ORTHO05D003036 7.4e-19 98.2 228 36.4
Thhalv10005758m.g Eutrema salsugineum HOM05D001978 ORTHO05D003036 9.7e-19 97.8 241 36.5
AL5G46320 Arabidopsis lyrata HOM05D001978 ORTHO05D003036 2.8e-18 96.3 251 36.7
Zm00001eb329590 Zea mays HOM05D001978 ORTHO05D003036 2.8e-18 96.3 262 34.4
Zm00001eb110650 Zea mays HOM05D001978 ORTHO05D003036 4.8e-18 95.5 292 32.9
Ca_29948_v3 Cicer arietinum L. HOM05D001978 ORTHO05D003036 6.3e-18 95.1 270 34.8
BraA09t40921Z Brassica rapa HOM05D001978 ORTHO05D003036 1.1e-17 94.4 292 33.6
AT3G63460 Arabidopsis thaliana HOM05D001978 ORTHO05D003036 1.8e-17 93.6 257 35.0
Lj9A642G52 Lonicera japonica HOM05D001978 ORTHO05D003036 4.1e-17 92.4 127 47.2
Rhsim07G0060700 Rhododendron simsii HOM05D000009 ORTHO05D000008 1.2e-16 90.9 119 51.3
Rhsim07G0059800 Rhododendron simsii HOM05D000009 ORTHO05D000008 2.6e-16 89.7 164 45.7
HanXRQChr06g0183381 Helianthus annuus HOM05D001978 ORTHO05D003036 3.4e-16 89.4 249 36.5
Haze_03126 Corylus avellana HOM05D000701 ORTHO05D000531 7.7e-16 88.2 98 51.0
Rhsim07G0060400 Rhododendron simsii HOM05D001978 ORTHO05D003036 1.0e-15 87.8 160 44.4
ECA234G3788 Erigeron canadensis HOM05D001978 ORTHO05D003036 2.2e-15 86.7 213 33.8
BcaB02g08058 Brassica carinata HOM05D001978 ORTHO05D003036 2.5e-14 83.2 189 37.6
Cpa.g.sc174.8 Carica papaya HOM05D001978 ORTHO05D003036 1.8e-12 77.0 156 41.0
MSTRG.28045 Avicennia marina HOM05D001978 ORTHO05D003036 5.1e-12 75.5 98 45.9
Mapoly0156s0008 Marchantia polymorpha HOM05D001978 ORTHO05D003036 8.8e-12 74.7 281 28.8
vmacro16398 Vaccinium macrocarpon HOM05D000009 ORTHO05D000008 1.5e-11 73.9 173 37.6
TAR636G2630 Trochodendron aralioides HOM05D001978 ORTHO05D003036 2.5e-11 73.2 98 45.9
AagrBONN_evm.TU.Sc2ySwM_117.497 Anthoceros agrestis HOM05D001978 ORTHO05D003036 9.7e-11 71.2 125 42.4
Carub.0001s1846 Capsella rubella HOM05D001978 ORTHO05D003036 1.3e-10 70.9 220 32.3
Pp3c1_29660 Physcomitrium patens HOM05D001978 ORTHO05D003036 2.4e-09 66.6 217 32.3
CARHR040110 Cardamine hirsuta HOM05D001978 ORTHO05D003036 3.1e-09 66.2 184 35.3
BcaB03g12953 Brassica carinata HOM05D001978 ORTHO05D003036 5.3e-09 65.5 233 30.0
AT1G18830 Arabidopsis thaliana HOM05D001978 ORTHO05D003036 2.0e-08 63.5 213 31.5
Oeu008526.2 Olea europaea HOM05D007843 ORTHO05D003639 2.0e-08 63.5 71 53.5
CBR_g4546 Chara braunii HOM05D001978 ORTHO05D003036 7.7e-08 61.6 173 32.9
Pp3c2_17710 Physcomitrium patens HOM05D001978 ORTHO05D003036 1.3e-07 60.8 201 34.8
TPR.G20258 Trifolium pratense HOM05D001978 ORTHO05D003036 2.2e-07 60.1 217 29.5
C08p18950 Brassica napus HOM05D001978 ORTHO05D003036 2.9e-07 59.7 239 28.9
BolC8t49521H Brassica oleracea HOM05D001978 ORTHO05D003036 8.5e-07 58.2 239 28.9
Rhsim07G0060500 Rhododendron simsii HOM05D000009 ORTHO05D000008 8.5e-07 58.2 49 61.2
TPR.G10118 Trifolium pratense HOM05D001978 ORTHO05D003036 5.5e-06 55.5 98 43.9
BraA08t34951Z Brassica rapa HOM05D001978 ORTHO05D003036 7.2e-06 55.1 140 33.6
A08p30170 Brassica napus HOM05D001978 ORTHO05D003036 9.4e-06 54.7 239 29.3


User provided reference genes

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