Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0236800 Rhododendron simsii HOM05D002252 ORTHO05D002451 1.2e-46 189.5 94 100.0
Rhsim07G0241900 Rhododendron simsii HOM05D002252 ORTHO05D002451 2.2e-45 185.3 93 98.9
Rhsim08G0046700 Rhododendron simsii HOM05D002252 ORTHO05D002451 6.9e-31 137.1 95 77.9
RhsimUnG0150600 Rhododendron simsii HOM05D002252 ORTHO05D002451 6.9e-31 137.1 95 77.9
vmacro18308 Vaccinium macrocarpon HOM05D002252 ORTHO05D002451 3.4e-30 134.8 95 73.7
Lju41C45G5 Lonicera japonica HOM05D002252 ORTHO05D002451 2.1e-27 125.6 95 72.6
Actinidia36151 Actinidia chinensis HOM05D002252 ORTHO05D002451 2.7e-27 125.2 95 69.5
CSS0025328 Camellia sinensis var. sinensis HOM05D002252 ORTHO05D002451 7.9e-27 123.6 95 71.6
Actinidia05951 Actinidia chinensis HOM05D002252 ORTHO05D002451 3.0e-26 121.7 95 68.4
CSS0016509 Camellia sinensis var. sinensis HOM05D002252 ORTHO05D002451 3.9e-26 121.3 95 70.5
Dinv25705 Davidia involucrata HOM05D002252 ORTHO05D002451 5.1e-26 120.9 95 67.4
Hma1.2p1_0818F.1_g223490 Hydrangea macrophylla HOM05D002252 ORTHO05D002451 5.1e-26 120.9 95 66.3
CSS0006177 Camellia sinensis var. sinensis HOM05D002252 ORTHO05D002451 1.1e-25 119.8 95 66.3
CSS0012823 Camellia sinensis var. sinensis HOM05D002252 ORTHO05D002451 1.1e-25 119.8 95 66.3
Cc06_g20970 Coffea canephora HOM05D002252 ORTHO05D002451 3.3e-25 118.2 96 67.7
Lj7C604T11 Lonicera japonica HOM05D002252 ORTHO05D002451 5.6e-25 117.5 87 69.0
Nitab4.5_0000935g0060 Nicotiana tabacum HOM05D002252 ORTHO05D002451 1.4e-23 112.8 95 66.3
Nitab4.5_0006942g0050 Nicotiana tabacum HOM05D002252 ORTHO05D002451 1.4e-23 112.8 95 66.3
Lsat_1_v5_gn_4_184781 Lactuca sativa HOM05D002252 ORTHO05D002451 4.0e-23 111.3 95 64.2
ECA232G0113 Erigeron canadensis HOM05D002252 ORTHO05D002451 5.3e-23 110.9 96 60.4
HanXRQChr15g0487121 Helianthus annuus HOM05D002252 ORTHO05D002451 6.9e-23 110.5 95 62.1
Lsat_1_v5_gn_0_30740 Lactuca sativa HOM05D002252 ORTHO05D002451 6.9e-23 110.5 95 63.2
HanXRQChr09g0255741 Helianthus annuus HOM05D002252 ORTHO05D002451 1.2e-22 109.8 95 64.2
SGA_v2.0_scaffold154G37142 Striga asiatica HOM05D002252 ORTHO05D002451 1.2e-22 109.8 96 65.6
FvH4_6g52280 Fragaria vesca HOM05D002252 ORTHO05D002451 2.6e-22 108.6 97 60.8
FAN14G0722 Fragaria x ananassa HOM05D002252 ORTHO05D002451 2.6e-22 108.6 97 60.8
TWI36G1614 Tripterygium wilfordii HOM05D002252 ORTHO05D002451 3.4e-22 108.2 97 61.9
arahy.Tifrunner.gnm1.ann1.L3RJRN Arachis hypogaea HOM05D002252 ORTHO05D002451 4.5e-22 107.8 95 62.1
Phvul.008G145726 Phaseolus vulgaris HOM05D002252 ORTHO05D002451 4.5e-22 107.8 94 62.8
PGSC0003DMG400012624 Solanum tuberosum HOM05D002252 ORTHO05D002451 7.6e-22 107.1 96 62.5
Glyma.16G066200 Glycine max HOM05D002252 ORTHO05D002451 1.0e-21 106.7 95 61.1
VMungo1080G0236 Vigna mungo HOM05D002252 ORTHO05D002451 1.0e-21 106.7 94 62.8
CANSAT64G2483 Cannabis sativa HOM05D002252 ORTHO05D002451 1.7e-21 105.9 95 58.9
arahy.Tifrunner.gnm1.ann1.18R6S7 Arachis hypogaea HOM05D002252 ORTHO05D002451 2.2e-21 105.5 95 61.1
arahy.Tifrunner.gnm1.ann1.MZXR1C Arachis hypogaea HOM05D002252 ORTHO05D002451 2.2e-21 105.5 95 61.1
Oeu062396.1 Olea europaea HOM05D002252 ORTHO05D002451 2.2e-21 105.5 96 62.5
SalBow7G1758 Salvia bowleyana HOM05D002252 ORTHO05D002451 2.2e-21 105.5 96 61.5
SGA_v2.0_scaffold47G17534 Striga asiatica HOM05D002252 ORTHO05D002451 2.2e-21 105.5 96 61.5
arahy.Tifrunner.gnm1.ann1.EL261C Arachis hypogaea HOM05D002252 ORTHO05D002451 2.9e-21 105.1 95 61.1
Migut.K01430 Erythranthe guttata HOM05D002252 ORTHO05D002451 3.8e-21 104.8 96 64.6
Glyma.19G080600 Glycine max HOM05D002252 ORTHO05D002451 3.8e-21 104.8 95 60.0
Solyc02g093680.3 Solanum lycopersicum HOM05D002252 ORTHO05D002451 3.8e-21 104.8 96 61.5
Sopen02g038310 Solanum pennellii HOM05D002252 ORTHO05D002451 3.8e-21 104.8 96 61.5
unitig_744.g24361 Utricularia gibba HOM05D002252 ORTHO05D002451 3.8e-21 104.8 96 62.5
RcHm_v2.0_Chr2g0173811 Rosa chinensis HOM05D002252 ORTHO05D002451 4.9e-21 104.4 98 58.2
TAR629G1595 Trochodendron aralioides HOM05D002252 ORTHO05D002451 6.5e-21 104.0 95 63.2
FAN09G0242 Fragaria x ananassa HOM05D002252 ORTHO05D002451 8.4e-21 103.6 97 58.8
FAN02G1702 Fragaria x ananassa HOM05D002252 ORTHO05D002451 1.4e-20 102.8 97 57.7
Oeu050444.4 Olea europaea HOM05D002252 ORTHO05D002451 1.4e-20 102.8 96 59.4
MSTRG.15548 Avicennia marina HOM05D002252 ORTHO05D002451 1.9e-20 102.4 96 60.4
FAN05G0765 Fragaria x ananassa HOM05D002252 ORTHO05D002451 1.9e-20 102.4 97 57.7
Duzib264G0940 Durio zibethinus HOM05D002252 ORTHO05D002451 4.2e-20 101.3 101 57.4
Oeu013961.2 Olea europaea HOM05D002252 ORTHO05D002451 5.5e-20 100.9 96 61.5
Atru.chr6.2471 Acer truncatum HOM05D002252 ORTHO05D002451 9.3e-20 100.1 96 57.3
Ca_03860_v3 Cicer arietinum L. HOM05D002252 ORTHO05D002451 2.1e-19 99.0 96 56.2
MELO3C014824.2 Cucumis melo HOM05D002252 ORTHO05D002451 2.1e-19 99.0 95 56.8
Oeu037153.1 Olea europaea HOM05D002252 ORTHO05D002451 2.7e-19 98.6 96 60.4
CsaV3_3G027530 Cucumis sativus L. HOM05D002252 ORTHO05D002451 3.5e-19 98.2 95 56.8
Gohir.A05G342500 Gossypium hirsutum HOM05D002252 ORTHO05D002451 3.5e-19 98.2 101 54.5
Gohir.D04G080480 Gossypium hirsutum HOM05D002252 ORTHO05D002451 3.5e-19 98.2 101 54.5
Gorai.012G091400 Gossypium raimondii HOM05D002252 ORTHO05D002451 3.5e-19 98.2 101 54.5
Lalb_Chr24g0403431 Lupinus albus HOM05D002252 ORTHO05D002451 3.5e-19 98.2 95 55.8
Medtr1g492610 Medicago truncatula HOM05D002252 ORTHO05D002451 3.5e-19 98.2 95 53.7
Sed0001228 Sechium edule HOM05D002252 ORTHO05D002451 3.5e-19 98.2 98 55.1
TWI56G0318 Tripterygium wilfordii HOM05D002252 ORTHO05D002451 3.5e-19 98.2 97 56.7
Duzib147G0730 Durio zibethinus HOM05D002252 ORTHO05D002451 6.0e-19 97.4 101 54.5
Thecc.04G026800 Theobroma cacao HOM05D002252 ORTHO05D002451 6.0e-19 97.4 101 56.4
MSTRG.3273 Avicennia marina HOM05D002252 ORTHO05D002451 1.0e-18 96.7 96 59.4
COL.COLO4_29241 Corchorus olitorius HOM05D002252 ORTHO05D002451 1.0e-18 96.7 101 55.4
MD17G1019700 Malus domestica HOM05D002252 ORTHO05D002451 1.0e-18 96.7 98 56.1
ClCG05G013010 Citrullus lanatus HOM05D002252 ORTHO05D002451 1.3e-18 96.3 95 54.7
Manes.15G154900 Manihot esculenta HOM05D002252 ORTHO05D002451 1.3e-18 96.3 99 57.6
AUR62025071 Chenopodium quinoa HOM05D002252 ORTHO05D002451 2.3e-18 95.5 96 56.2
Medtr0018s0260 Medicago truncatula HOM05D002252 ORTHO05D002451 2.3e-18 95.5 95 52.6
Peaxi162Scf00420g00234 Petunia axillaris HOM05D002252 ORTHO05D002451 2.3e-18 95.5 97 57.7
Cpa.g.sc130.56 Carica papaya HOM05D002252 ORTHO05D002451 3.0e-18 95.1 97 58.8
CiPaw.04G032100 Carya illinoinensis HOM05D002252 ORTHO05D002451 3.9e-18 94.7 95 56.8
Psat3g168600 Pisum sativum HOM05D002252 ORTHO05D002451 6.7e-18 94.0 96 54.2
Sed0010707 Sechium edule HOM05D002252 ORTHO05D002451 6.7e-18 94.0 95 53.7
MD09G1019100 Malus domestica HOM05D002252 ORTHO05D002451 8.7e-18 93.6 100 53.0
Aqoxy3G01308 Aquilegia oxysepala HOM05D002252 ORTHO05D002451 1.1e-17 93.2 106 52.8
Manes.17G108500 Manihot esculenta HOM05D002252 ORTHO05D002451 1.1e-17 93.2 99 57.6
unitig_1.g29342 Utricularia gibba HOM05D002252 ORTHO05D002451 1.1e-17 93.2 96 58.3
unitig_748.g6971 Utricularia gibba HOM05D002252 ORTHO05D002451 1.1e-17 93.2 96 58.3
Lj1g0023844 Lotus japonicus HOM05D002252 ORTHO05D002451 4.3e-17 91.3 99 51.5
TPR.G1082 Trifolium pratense HOM05D002252 ORTHO05D002451 4.3e-17 91.3 96 52.1
DCAR_021751 Daucus carota HOM05D002252 ORTHO05D002451 7.4e-17 90.5 95 51.6
ECA246G3649 Erigeron canadensis HOM05D002252 ORTHO05D002451 7.4e-17 90.5 95 54.7
Lj1g0000985 Lotus japonicus HOM05D002252 ORTHO05D002451 9.7e-17 90.1 99 51.5
PSO478G0553 Papaver somniferum HOM05D002252 ORTHO05D002451 9.7e-17 90.1 99 57.6
Gohir.A07G225100 Gossypium hirsutum HOM05D002252 ORTHO05D002451 1.3e-16 89.7 103 47.6
Gorai.001G267500 Gossypium raimondii HOM05D002252 ORTHO05D002451 1.3e-16 89.7 103 48.5
Ciclev10016181m.g Citrus clementina HOM05D002252 ORTHO05D002451 2.8e-16 88.6 99 53.5
PSO509G0032 Papaver somniferum HOM05D002252 ORTHO05D002451 2.8e-16 88.6 99 57.6
Migut.H00043 Erythranthe guttata HOM05D002252 ORTHO05D002451 3.7e-16 88.2 96 56.2
Gohir.D07G232300 Gossypium hirsutum HOM05D002252 ORTHO05D002451 3.7e-16 88.2 103 49.5
Sabra16G0219100 Salix brachista HOM05D002252 ORTHO05D002451 6.3e-16 87.4 101 53.5
BcaB07g30165 Brassica carinata HOM05D002252 ORTHO05D002451 1.1e-15 86.7 99 55.6
Sp2g16570 Schrenkiella parvula HOM05D002252 ORTHO05D002451 1.1e-15 86.7 99 54.5
THA.LOC104805354 Tarenaya hassleriana HOM05D002252 ORTHO05D002451 1.4e-15 86.3 99 52.5
A02p35420 Brassica napus HOM05D002252 ORTHO05D002451 1.8e-15 85.9 100 53.0
BraA02t08543Z Brassica rapa HOM05D002252 ORTHO05D002451 1.8e-15 85.9 100 53.0
PGR142G3931 Punica granatum HOM05D002252 ORTHO05D002451 1.8e-15 85.9 103 50.5
AL5G16710 Arabidopsis lyrata HOM05D002252 ORTHO05D002451 2.4e-15 85.5 100 53.0
A06p41220 Brassica napus HOM05D002252 ORTHO05D002451 2.4e-15 85.5 102 53.9
BraA06t27046Z Brassica rapa HOM05D002252 ORTHO05D002451 2.4e-15 85.5 102 53.9
QL02p073340 Quercus lobata HOM05D002252 ORTHO05D002451 2.4e-15 85.5 95 52.6
Aa31LG9G970 Aethionema arabicum HOM05D002252 ORTHO05D002451 4.1e-15 84.7 100 55.0
C02p54130 Brassica napus HOM05D002252 ORTHO05D002451 4.1e-15 84.7 100 54.0
Thhalv10027879m.g Eutrema salsugineum HOM05D002252 ORTHO05D002451 4.1e-15 84.7 97 53.6
AT3G27380 Arabidopsis thaliana HOM05D002252 ORTHO05D002451 5.3e-15 84.3 100 53.0
BcaNung06207 Brassica carinata HOM05D002252 ORTHO05D002451 5.3e-15 84.3 100 56.0
BcaNung06208 Brassica carinata HOM05D002252 ORTHO05D002451 5.3e-15 84.3 100 56.0
Potri.001G338400 Populus trichocarpa HOM05D002252 ORTHO05D002451 5.3e-15 84.3 102 51.0
BcaC06g33825 Brassica carinata HOM05D002252 ORTHO05D002451 9.0e-15 83.6 100 52.0
BcaNung05650 Brassica carinata HOM05D002252 ORTHO05D002451 9.0e-15 83.6 100 52.0
A09p03380 Brassica napus HOM05D002252 ORTHO05D002451 9.0e-15 83.6 100 54.0
C07p36440 Brassica napus HOM05D002252 ORTHO05D002451 9.0e-15 83.6 100 52.0
BolC7t44162H Brassica oleracea HOM05D002252 ORTHO05D002451 9.0e-15 83.6 100 52.0
BraA09t35977Z Brassica rapa HOM05D002252 ORTHO05D002451 9.0e-15 83.6 100 54.0
Sc03g0007140 Simmondsia chinensis HOM05D002252 ORTHO05D002451 9.0e-15 83.6 98 51.0
THA.LOC104824570 Tarenaya hassleriana HOM05D002252 ORTHO05D002451 9.0e-15 83.6 99 51.5
CARHR261300 Cardamine hirsuta HOM05D002252 ORTHO05D002451 1.2e-14 83.2 101 56.4
Cfa007300 Carpinus fangiana HOM05D002252 ORTHO05D002451 1.2e-14 83.2 95 50.5
Aa31LG2G5420 Aethionema arabicum HOM05D002252 ORTHO05D002451 1.5e-14 82.8 97 51.5
BcaNung05651 Brassica carinata HOM05D002252 ORTHO05D002451 1.5e-14 82.8 85 61.2
Haze_14794 Corylus avellana HOM05D002252 ORTHO05D002451 1.5e-14 82.8 95 49.5
Thhalv10004747m.g Eutrema salsugineum HOM05D002252 ORTHO05D002451 2.0e-14 82.4 99 52.5
MD17G1159200 Malus domestica HOM05D002252 ORTHO05D002451 2.0e-14 82.4 95 50.5
BolC2t11476H Brassica oleracea HOM05D002252 ORTHO05D002451 2.6e-14 82.0 96 51.0
BolC6t37125H Brassica oleracea HOM05D002252 ORTHO05D002451 2.6e-14 82.0 95 53.7
CARHR148700 Cardamine hirsuta HOM05D002252 ORTHO05D002451 2.6e-14 82.0 102 52.9
C09p03600 Brassica napus HOM05D002252 ORTHO05D002451 3.4e-14 81.6 101 53.5
Hund13012 Selenicereus undatus HOM05D002252 ORTHO05D002451 3.4e-14 81.6 95 51.6
Prupe.3G297900 Prunus persica HOM05D002252 ORTHO05D002451 4.5e-14 81.3 92 50.0
Sopen02g037280 Solanum pennellii HOM05D002252 ORTHO05D002451 4.5e-14 81.3 56 71.4
AT5G40650 Arabidopsis thaliana HOM05D002252 ORTHO05D002451 5.9e-14 80.9 97 52.6
EL10Ac9g20793 Beta vulgaris HOM05D002252 ORTHO05D002451 5.9e-14 80.9 96 47.9
BcaC04g23905 Brassica carinata HOM05D002252 ORTHO05D002451 5.9e-14 80.9 101 52.5
BolC9t53279H Brassica oleracea HOM05D002252 ORTHO05D002451 5.9e-14 80.9 101 52.5
Carub.0007s3483 Capsella rubella HOM05D002252 ORTHO05D002451 7.7e-14 80.5 97 52.6
Sp7g01210 Schrenkiella parvula HOM05D002252 ORTHO05D002451 1.3e-13 79.7 97 53.6
AL7G49090 Arabidopsis lyrata HOM05D002252 ORTHO05D002451 2.2e-13 79.0 99 52.5
Eucgr.J00347 Eucalyptus grandis HOM05D002252 ORTHO05D002451 3.8e-13 78.2 54 68.5
Carub.0005s0569 Capsella rubella HOM05D002252 ORTHO05D002451 5.0e-13 77.8 102 53.9
A07p20420 Brassica napus HOM05D002252 ORTHO05D002451 2.5e-12 75.5 95 51.6
BraA07t29739Z Brassica rapa HOM05D002252 ORTHO05D002451 2.5e-12 75.5 95 51.6
AUR62037146 Chenopodium quinoa HOM05D002252 ORTHO05D002451 2.5e-12 75.5 49 73.5
MBI07_g07821_MAGBIO Magnolia biondii HOM05D002252 ORTHO05D002451 4.2e-12 74.7 84 50.0
HPP92_007222 Vanilla planifolia HOM05D002252 ORTHO05D002451 1.6e-11 72.8 80 51.2
Zm00001eb261270 Zea mays HOM05D002252 ORTHO05D002451 1.0e-10 70.1 95 45.3
DCAR_011283 Daucus carota HOM05D002252 ORTHO05D002451 3.9e-10 68.2 95 45.3
Zm00001eb173490 Zea mays HOM05D002252 ORTHO05D002451 3.3e-09 65.1 99 43.4
Lj1g0008845 Lotus japonicus HOM05D002252 ORTHO05D002451 9.7e-09 63.5 49 63.3
Lj4g0000724 Lotus japonicus HOM05D002252 ORTHO05D002451 9.7e-09 63.5 49 63.3
Mapoly0091s0036 Marchantia polymorpha HOM05D002252 ORTHO05D002451 9.7e-09 63.5 75 45.3
Haze_26847 Corylus avellana HOM05D002252 ORTHO05D002451 1.3e-08 63.2 69 49.3
Os08g0120000 Oryza sativa ssp. japonica HOM05D002252 ORTHO05D002451 1.3e-08 63.2 98 42.9
Zm00001eb375150 Zea mays HOM05D002252 ORTHO05D002451 1.7e-08 62.8 100 45.0
Pp3c12_11350 Physcomitrium patens HOM05D002252 ORTHO05D002451 3.7e-08 61.6 86 38.4
SMO201G0193 Selaginella moellendorffii HOM05D002252 ORTHO05D002451 3.7e-08 61.6 44 59.1
SEGI_07008 Sequoiadendron giganteum HOM05D002252 ORTHO05D002451 4.8e-08 61.2 72 47.2
Glyma.10G134200 Glycine max HOM05D002252 ORTHO05D002451 1.8e-07 59.3 59 57.6
SMO353G0257 Selaginella moellendorffii HOM05D002252 ORTHO05D002451 2.4e-07 58.9 69 49.3
EL10Ac6g15092 Beta vulgaris HOM05D002252 ORTHO05D002451 4.1e-07 58.2 79 41.8
Os09g0370300 Oryza sativa ssp. japonica HOM05D002252 ORTHO05D002451 6.9e-07 57.4 48 58.3
CiPaw.03G048800 Carya illinoinensis HOM05D002252 ORTHO05D002451 9.1e-07 57.0 97 43.3
Ciclev10027338m.g Citrus clementina HOM05D002252 ORTHO05D002451 9.1e-07 57.0 82 39.0
AagrBONN_evm.TU.Sc2ySwM_117.2699 Anthoceros agrestis HOM05D002252 ORTHO05D002451 1.2e-06 56.6 49 57.1
Cfa026859 Carpinus fangiana HOM05D002252 ORTHO05D002451 1.5e-06 56.2 81 40.7
PGR102G1179 Punica granatum HOM05D002252 ORTHO05D002451 1.5e-06 56.2 42 61.9
Dinv16295 Davidia involucrata HOM05D002252 ORTHO05D002451 2.0e-06 55.8 57 49.1
GSVIVG01005872001 Vitis vinifera HOM05D002252 ORTHO05D002451 2.0e-06 55.8 85 38.8
PRCOL_00006893 Prasinoderma coloniale HOM05D002252 ORTHO05D002451 3.4e-06 55.1 73 37.0
Prupe.6G182900 Prunus persica HOM05D002252 ORTHO05D002451 3.4e-06 55.1 50 54.0
ECA234G4045 Erigeron canadensis HOM05D002252 ORTHO05D002451 4.5e-06 54.7 82 40.2
FAN19G2551 Fragaria x ananassa HOM05D002252 ORTHO05D002451 4.5e-06 54.7 42 59.5
AagrBONN_evm.TU.Sc2ySwM_228.3907 Anthoceros agrestis HOM05D002252 ORTHO05D002451 5.9e-06 54.3 41 53.7
Cfa002680 Carpinus fangiana HOM05D002252 ORTHO05D008789 5.9e-06 54.3 42 59.5
Cre06.g264200 Chlamydomonas reinhardtii HOM05D002252 ORTHO05D002451 5.9e-06 54.3 52 46.2
FvH4_1g21120 Fragaria vesca HOM05D002252 ORTHO05D002451 5.9e-06 54.3 42 59.5
Manes.13G091700 Manihot esculenta HOM05D002252 ORTHO05D002451 5.9e-06 54.3 66 45.5
Atru.chr4.103 Acer truncatum HOM05D002252 ORTHO05D002451 7.7e-06 53.9 85 38.8
Gohir.A12G093625 Gossypium hirsutum HOM05D002252 ORTHO05D002451 7.7e-06 53.9 61 44.3
Oeu054845.1 Olea europaea HOM05D002252 ORTHO05D002451 7.7e-06 53.9 84 39.3
SGA_v2.0_scaffold47G17772 Striga asiatica HOM05D002252 ORTHO05D002451 7.7e-06 53.9 82 40.2


User provided reference genes

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