Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0140000 Rhododendron simsii HOM05D000228 ORTHO05D030537 2.1e-123 445.7 222 100.0
Rhsim11G0049300 Rhododendron simsii HOM05D027023 ORTHO05D030537 3.1e-66 255.8 192 69.8
Rhsim10G0150400 Rhododendron simsii HOM05D005191 ORTHO05D030537 1.9e-63 246.5 209 66.0
Rhsim01G0163200 Rhododendron simsii HOM05D027023 ORTHO05D030537 4.9e-43 178.7 94 92.6
Actinidia21520 Actinidia chinensis HOM05D000228 ORTHO05D004880 1.1e-21 107.8 132 52.3
vmacro12694 Vaccinium macrocarpon HOM05D000228 ORTHO05D004880 1.8e-21 107.1 95 64.2
CSS0032728 Camellia sinensis var. sinensis HOM05D000228 ORTHO05D004880 6.9e-21 105.1 131 48.1
Rhsim01G0124000 Rhododendron simsii HOM05D000228 ORTHO05D004880 6.9e-21 105.1 95 64.2
Dinv22035 Davidia involucrata HOM05D000228 ORTHO05D004880 2.6e-20 103.2 77 72.7
CANSAT56G3974 Cannabis sativa HOM05D000228 ORTHO05D004880 4.4e-20 102.4 116 52.6
Potri.001G027232 Populus trichocarpa HOM05D000228 ORTHO05D004880 7.6e-20 101.7 77 70.1
DCAR_022342 Daucus carota HOM05D000228 ORTHO05D004880 1.3e-19 100.9 85 64.7
MD07G1039700 Malus domestica HOM05D000228 ORTHO05D004880 1.7e-19 100.5 77 67.5
Lj7A585G29 Lonicera japonica HOM05D000228 ORTHO05D004880 2.9e-19 99.8 113 50.4
MD02G1287600 Malus domestica HOM05D000228 ORTHO05D004880 2.9e-19 99.8 77 67.5
Nn6g31494 Nelumbo nucifera HOM05D000228 ORTHO05D004880 6.4e-19 98.6 77 67.5
Hma1.2p1_1202F.1_g266790 Hydrangea macrophylla HOM05D000228 ORTHO05D004880 8.4e-19 98.2 134 48.5
Lsat_1_v5_gn_7_31901 Lactuca sativa HOM05D006097 ORTHO05D004880 8.4e-19 98.2 131 47.3
HPP92_010995 Vanilla planifolia HOM05D000228 ORTHO05D004880 1.4e-18 97.4 126 46.8
Lj3g0014961 Lotus japonicus HOM05D000228 ORTHO05D004880 1.9e-18 97.1 97 55.7
Manes.04G159600 Manihot esculenta HOM05D000228 ORTHO05D004880 1.9e-18 97.1 77 67.5
Sabra03G0146600 Salix brachista HOM05D000228 ORTHO05D004880 1.9e-18 97.1 121 50.4
TWI15G0020 Tripterygium wilfordii HOM05D000228 ORTHO05D004880 1.9e-18 97.1 97 56.7
Potri.003G196900 Populus trichocarpa HOM05D000228 ORTHO05D004880 2.4e-18 96.7 132 48.5
TWI38G1715 Tripterygium wilfordii HOM05D000228 ORTHO05D004880 2.4e-18 96.7 77 66.2
Lalb_Chr01g0007761 Lupinus albus HOM05D000228 ORTHO05D004880 3.2e-18 96.3 97 53.6
Glyma.15G235900 Glycine max HOM05D000228 ORTHO05D004880 4.2e-18 95.9 133 45.1
Lj3g0006268 Lotus japonicus HOM05D000228 ORTHO05D004880 4.2e-18 95.9 77 64.9
TAR626G0081 Trochodendron aralioides HOM05D000228 ORTHO05D004880 4.2e-18 95.9 77 62.3
Ca_23957_v3 Cicer arietinum L. HOM05D000228 ORTHO05D004880 5.4e-18 95.5 97 55.7
Ca_30885_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 5.4e-18 95.5 97 55.7
Haze_03043 Corylus avellana HOM05D000228 ORTHO05D004880 5.4e-18 95.5 77 67.5
HanXRQChr15g0481481 Helianthus annuus HOM05D000228 ORTHO05D004880 5.4e-18 95.5 136 44.1
Prupe.2G035500 Prunus persica HOM05D000228 ORTHO05D004880 5.4e-18 95.5 77 64.9
GSVIVG01013491001 Vitis vinifera HOM05D000228 ORTHO05D004880 5.4e-18 95.5 133 46.6
Atru.chr12.1341 Acer truncatum HOM05D000228 ORTHO05D004880 7.1e-18 95.1 77 63.6
Aqoxy7G04198 Aquilegia oxysepala HOM05D000228 ORTHO05D004880 7.1e-18 95.1 111 53.2
Eucgr.J01182 Eucalyptus grandis HOM05D000228 ORTHO05D004880 7.1e-18 95.1 75 66.7
FAN01G1291 Fragaria x ananassa HOM05D000228 ORTHO05D004880 7.1e-18 95.1 73 69.9
Cpa.g.sc271.2 Carica papaya HOM05D000228 ORTHO05D004880 9.3e-18 94.7 116 46.6
Sed0021971 Sechium edule HOM05D000228 ORTHO05D004880 9.3e-18 94.7 77 66.2
ECA236G0597 Erigeron canadensis HOM05D000228 ORTHO05D004880 1.2e-17 94.4 75 66.7
Glyma.13G196900 Glycine max HOM05D000228 ORTHO05D004880 1.2e-17 94.4 133 44.4
FvH4_7g03040 Fragaria vesca HOM05D000228 ORTHO05D004880 1.6e-17 94.0 73 68.5
FAN03G2523 Fragaria x ananassa HOM05D000228 ORTHO05D004880 1.6e-17 94.0 73 68.5
FAN06G4504 Fragaria x ananassa HOM05D000228 ORTHO05D004880 1.6e-17 94.0 73 68.5
FAN10G2682 Fragaria x ananassa HOM05D000228 ORTHO05D004880 1.6e-17 94.0 73 68.5
RcHm_v2.0_Chr1g0324091 Rosa chinensis HOM05D000228 ORTHO05D004880 1.6e-17 94.0 114 50.0
TPR.G25078 Trifolium pratense HOM05D000228 ORTHO05D004880 1.6e-17 94.0 133 44.4
TPR.G27818 Trifolium pratense HOM05D000228 ORTHO05D004880 1.6e-17 94.0 133 44.4
arahy.Tifrunner.gnm1.ann1.K566NY Arachis hypogaea HOM05D000228 ORTHO05D004880 2.1e-17 93.6 97 52.6
Medtr8g038990 Medicago truncatula HOM05D000228 ORTHO05D004880 2.1e-17 93.6 97 54.6
Psat4g144400 Pisum sativum HOM05D000228 ORTHO05D004880 2.1e-17 93.6 133 45.1
arahy.Tifrunner.gnm1.ann1.50BPU8 Arachis hypogaea HOM05D000228 ORTHO05D004880 2.7e-17 93.2 97 51.5
CiPaw.13G013500 Carya illinoinensis HOM05D000228 ORTHO05D004880 2.7e-17 93.2 77 66.2
Ciclev10004129m.g Citrus clementina HOM05D000228 ORTHO05D004880 2.7e-17 93.2 117 47.0
Cc02_g30260 Coffea canephora HOM05D000228 ORTHO05D004880 2.7e-17 93.2 77 64.9
Lalb_Chr03g0032731 Lupinus albus HOM05D000228 ORTHO05D004880 2.7e-17 93.2 97 51.5
HanXRQChr01g0022531 Helianthus annuus HOM05D000228 ORTHO05D004880 3.5e-17 92.8 75 64.0
SGA_v2.0_scaffold124G33613 Striga asiatica HOM05D000228 ORTHO05D004880 3.5e-17 92.8 135 48.1
unitig_0.g1386 Utricularia gibba HOM05D000228 ORTHO05D004880 3.5e-17 92.8 78 64.1
ClCG01G007520 Citrullus lanatus HOM05D000228 ORTHO05D004880 4.6e-17 92.4 119 47.9
MELO3C005153.2 Cucumis melo HOM05D000228 ORTHO05D004880 4.6e-17 92.4 119 47.9
CsaV3_5G024490 Cucumis sativus L. HOM05D000228 ORTHO05D004880 4.6e-17 92.4 119 47.9
Thecc.10G157200 Theobroma cacao HOM05D000228 ORTHO05D004880 4.6e-17 92.4 129 47.3
Sc11g0006440 Simmondsia chinensis HOM05D000228 ORTHO05D004880 6.0e-17 92.0 76 63.2
Phvul.011G206900 Phaseolus vulgaris HOM05D000228 ORTHO05D004880 7.8e-17 91.7 131 44.3
PGR044G0122 Punica granatum HOM05D000228 ORTHO05D004880 7.8e-17 91.7 75 66.7
VMungo1127G1028 Vigna mungo HOM05D000228 ORTHO05D004880 7.8e-17 91.7 75 62.7
Aqoxy6G01013 Aquilegia oxysepala HOM05D000228 ORTHO05D004880 1.3e-16 90.9 118 46.6
PSO782G2240 Papaver somniferum HOM05D000228 ORTHO05D004880 1.3e-16 90.9 120 45.8
SalBow5G3376 Salvia bowleyana HOM05D000228 ORTHO05D004880 1.3e-16 90.9 135 45.9
SalBow5G5050 Salvia bowleyana HOM05D000228 ORTHO05D004880 1.3e-16 90.9 135 45.9
CAN.G1045.38 Capsicum annuum HOM05D000228 ORTHO05D004880 1.7e-16 90.5 78 65.4
COL.COLO4_20753 Corchorus olitorius HOM05D000228 ORTHO05D004880 2.3e-16 90.1 75 65.3
AUR62026863 Chenopodium quinoa HOM05D000228 ORTHO05D004880 3.0e-16 89.7 76 60.5
Sed0005526 Sechium edule HOM05D000228 ORTHO05D004880 3.0e-16 89.7 78 62.8
Oeu038177.1 Olea europaea HOM05D000228 ORTHO05D004880 3.9e-16 89.4 111 50.5
Aa31LG5G19570 Aethionema arabicum HOM05D000228 ORTHO05D004880 5.1e-16 89.0 77 58.4
Migut.B01227 Erythranthe guttata HOM05D000228 ORTHO05D004880 6.6e-16 88.6 134 45.5
Nitab4.5_0000307g0250 Nicotiana tabacum HOM05D000228 ORTHO05D004880 6.6e-16 88.6 77 63.6
Nitab4.5_0004955g0050 Nicotiana tabacum HOM05D000228 ORTHO05D004880 6.6e-16 88.6 77 63.6
PSO063G0693 Papaver somniferum HOM05D000228 ORTHO05D004880 6.6e-16 88.6 120 45.0
Peaxi162Scf00767g00417 Petunia axillaris HOM05D000228 ORTHO05D004880 8.7e-16 88.2 77 63.6
Solyc01g096390.4 Solanum lycopersicum HOM05D000228 ORTHO05D004880 8.7e-16 88.2 78 64.1
Sopen01g040120 Solanum pennellii HOM05D000228 ORTHO05D004880 8.7e-16 88.2 78 64.1
EL10Ac2g02803 Beta vulgaris HOM05D000228 ORTHO05D004880 1.1e-15 87.8 76 60.5
AUR62032652 Chenopodium quinoa HOM05D000228 ORTHO05D004880 1.1e-15 87.8 76 59.2
Hund27778 Selenicereus undatus HOM05D000228 ORTHO05D004880 1.1e-15 87.8 132 42.4
Hund27781 Selenicereus undatus HOM05D000228 ORTHO05D004880 1.1e-15 87.8 132 42.4
CDE02G4035 Ceratophyllum demersum HOM05D000228 ORTHO05D004880 1.5e-15 87.4 103 50.5
Ah.10g030560 Amaranthus hybridus HOM05D000228 ORTHO05D004880 1.9e-15 87.0 76 60.5
Ah.10g030570 Amaranthus hybridus HOM05D000228 ORTHO05D004880 1.9e-15 87.0 76 60.5
Gohir.A06G175400 Gossypium hirsutum HOM05D000228 ORTHO05D004880 1.9e-15 87.0 129 45.7
Gohir.D06G185200 Gossypium hirsutum HOM05D000228 ORTHO05D004880 1.9e-15 87.0 129 45.7
Gorai.010G216600 Gossypium raimondii HOM05D000228 ORTHO05D004880 1.9e-15 87.0 129 45.7
AT2G40030 Arabidopsis thaliana HOM05D000228 ORTHO05D004880 2.5e-15 86.7 77 58.4
Thhalv10016128m.g Eutrema salsugineum HOM05D000228 ORTHO05D004880 2.5e-15 86.7 120 44.2
Carub.0004s2219 Capsella rubella HOM05D000228 ORTHO05D004880 3.3e-15 86.3 77 57.1
Duzib114G0608 Durio zibethinus HOM05D000228 ORTHO05D004880 4.3e-15 85.9 129 43.4
AL4G37670 Arabidopsis lyrata HOM05D000228 ORTHO05D004880 5.6e-15 85.5 77 57.1
BcaB01g03594 Brassica carinata HOM05D000228 ORTHO05D004880 7.3e-15 85.1 77 57.1
BcaC01g05442 Brassica carinata HOM05D000228 ORTHO05D004880 9.6e-15 84.7 77 57.1
A03p22490 Brassica napus HOM05D000228 ORTHO05D004880 9.6e-15 84.7 77 57.1
C03p26640 Brassica napus HOM05D000228 ORTHO05D004880 9.6e-15 84.7 77 57.1
BolC3t15049H Brassica oleracea HOM05D000228 ORTHO05D004880 9.6e-15 84.7 77 57.1
BraA03t11476Z Brassica rapa HOM05D000228 ORTHO05D004880 9.6e-15 84.7 77 57.1
CARHR134990 Cardamine hirsuta HOM05D000228 ORTHO05D004880 9.6e-15 84.7 120 42.5
Zm00001eb207920 Zea mays HOM05D000228 ORTHO05D004880 9.6e-15 84.7 77 54.5
THA.LOC104809820 Tarenaya hassleriana HOM05D000228 ORTHO05D004880 1.3e-14 84.3 77 54.5
MBI19_g40205_MAGBIO Magnolia biondii HOM05D000228 ORTHO05D004880 1.6e-14 84.0 119 42.9
Sp4g22340 Schrenkiella parvula HOM05D000228 ORTHO05D004880 2.1e-14 83.6 120 41.7
MBI15_g20025_MAGBIO Magnolia biondii HOM05D000228 ORTHO05D004880 1.4e-13 80.9 74 60.8
MBI18_g06811_MAGBIO Magnolia biondii HOM05D000228 ORTHO05D004880 4.0e-13 79.3 115 46.1
MBI09_g32567_MAGBIO Magnolia biondii HOM05D000228 ORTHO05D004880 5.3e-13 79.0 138 39.1
MBI10_g12844_MAGBIO Magnolia biondii HOM05D000228 ORTHO05D004880 9.0e-13 78.2 58 65.5
BcaB02g09059 Brassica carinata HOM05D000228 ORTHO05D004880 1.2e-12 77.8 78 53.8
Lj4P514T6 Lonicera japonica HOM05D000228 ORTHO05D004880 2.4e-10 70.1 54 72.2
Lj3C124T2 Lonicera japonica HOM05D000228 ORTHO05D004880 1.0e-08 64.7 101 44.6
Zm00001eb119350 Zea mays HOM05D000228 ORTHO05D004880 1.9e-07 60.5 76 43.4
vmacro04366 Vaccinium macrocarpon HOM05D000029 ORTHO05D000854 2.5e-07 60.1 38 81.6
Dinv31865 Davidia involucrata HOM05D000029 ORTHO05D000854 3.3e-07 59.7 39 76.9
Lj4C798G9 Lonicera japonica HOM05D000029 ORTHO05D000854 3.3e-07 59.7 39 76.9
Rhsim07G0250600 Rhododendron simsii HOM05D000029 ORTHO05D000854 3.3e-07 59.7 38 78.9
SEGI_18016 Sequoiadendron giganteum HOM05D000228 ORTHO05D004880 3.3e-07 59.7 57 49.1
Actinidia37938 Actinidia chinensis HOM05D000029 ORTHO05D000854 4.3e-07 59.3 44 70.5
DCAR_022991 Daucus carota HOM05D000029 ORTHO05D000854 7.4e-07 58.5 39 74.4
ECA238G0178 Erigeron canadensis HOM05D000029 ORTHO05D000854 7.4e-07 58.5 39 76.9
HanXRQChr12g0366831 Helianthus annuus HOM05D000029 ORTHO05D000854 7.4e-07 58.5 74 45.9
FvH4_2g38230 Fragaria vesca HOM05D000029 ORTHO05D000854 9.6e-07 58.2 39 74.4
Hma1.2p1_0733F.1_g210220 Hydrangea macrophylla HOM05D000029 ORTHO05D000854 9.6e-07 58.2 39 74.4
Lj4C21T5 Lonicera japonica HOM05D000029 ORTHO05D000854 9.6e-07 58.2 39 74.4
Oeu061974.1 Olea europaea HOM05D000029 ORTHO05D000854 9.6e-07 58.2 73 47.9
Ciclev10000156m.g Citrus clementina HOM05D000029 ORTHO05D000854 1.3e-06 57.8 39 74.4
MD15G1010800 Malus domestica HOM05D000029 ORTHO05D000854 1.3e-06 57.8 39 74.4
Potri.005G241500 Populus trichocarpa HOM05D000029 ORTHO05D000854 1.3e-06 57.8 39 74.4
Prupe.1G363300 Prunus persica HOM05D000029 ORTHO05D000854 1.3e-06 57.8 39 74.4
PGR031G0445 Punica granatum HOM05D000029 ORTHO05D000854 1.3e-06 57.8 74 44.6
QL02p012090 Quercus lobata HOM05D000029 ORTHO05D000854 1.3e-06 57.8 39 74.4
CSS0031229 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D000854 1.6e-06 57.4 39 74.4
ECA233G5706 Erigeron canadensis HOM05D000029 ORTHO05D000854 1.6e-06 57.4 38 73.7
Manes.05G145600 Manihot esculenta HOM05D000029 ORTHO05D000854 1.6e-06 57.4 39 74.4
Nitab4.5_0003349g0010 Nicotiana tabacum HOM05D000029 ORTHO05D000854 1.6e-06 57.4 39 74.4
Peaxi162Scf00553g00620 Petunia axillaris HOM05D000029 ORTHO05D000854 1.6e-06 57.4 39 74.4
Sabra05G0187000 Salix brachista HOM05D000029 ORTHO05D013250 1.6e-06 57.4 39 71.8
TWI56G1368 Tripterygium wilfordii HOM05D000029 ORTHO05D000854 1.6e-06 57.4 39 74.4
GSVIVG01009941001 Vitis vinifera HOM05D000029 ORTHO05D000854 1.6e-06 57.4 39 74.4
COL.COLO4_26126 Corchorus olitorius HOM05D000029 ORTHO05D000854 2.1e-06 57.0 83 44.6
HanXRQChr14g0431061 Helianthus annuus HOM05D000029 ORTHO05D000854 2.1e-06 57.0 36 77.8
Lsat_1_v5_gn_8_30001 Lactuca sativa HOM05D000029 ORTHO05D000854 2.1e-06 57.0 39 69.2
Sc15g0004850 Simmondsia chinensis HOM05D000029 ORTHO05D000854 2.1e-06 57.0 74 45.9
Thecc.08G046900 Theobroma cacao HOM05D000029 ORTHO05D000854 2.1e-06 57.0 39 74.4
TWI12G1049 Tripterygium wilfordii HOM05D000029 ORTHO05D000854 2.1e-06 57.0 39 71.8
Atru.chr13.263 Acer truncatum HOM05D000029 ORTHO05D000854 2.8e-06 56.6 39 71.8
Cfa013974 Carpinus fangiana HOM05D000029 ORTHO05D000854 2.8e-06 56.6 39 71.8
Dinv39533 Davidia involucrata HOM05D000029 ORTHO05D000854 2.8e-06 56.6 39 71.8
Duzib041G0705 Durio zibethinus HOM05D000029 ORTHO05D000854 2.8e-06 56.6 39 71.8
CAN.G311.45 Capsicum annuum HOM05D000029 ORTHO05D000854 3.6e-06 56.2 39 71.8
Duzib116G0141 Durio zibethinus HOM05D000029 ORTHO05D000854 3.6e-06 56.2 39 71.8
FAN15G2748 Fragaria x ananassa HOM05D000029 ORTHO05D000854 3.6e-06 56.2 39 71.8
FAN20G1462 Fragaria x ananassa HOM05D000029 ORTHO05D000854 3.6e-06 56.2 39 71.8
FAN27G2151 Fragaria x ananassa HOM05D000029 ORTHO05D000854 3.6e-06 56.2 39 71.8
Solyc04g081590.4 Solanum lycopersicum HOM05D000029 ORTHO05D000854 3.6e-06 56.2 39 71.8
Sopen04g035200 Solanum pennellii HOM05D000029 ORTHO05D000854 3.6e-06 56.2 39 71.8
PGSC0003DMG400009941 Solanum tuberosum HOM05D000029 ORTHO05D000854 3.6e-06 56.2 39 71.8
arahy.Tifrunner.gnm1.ann1.8BA7G9 Arachis hypogaea HOM05D000029 ORTHO05D000854 4.8e-06 55.8 70 48.6
arahy.Tifrunner.gnm1.ann1.97EMNK Arachis hypogaea HOM05D000029 ORTHO05D000854 4.8e-06 55.8 70 48.6
BcaC01g05443 Brassica carinata HOM05D000228 ORTHO05D004880 4.8e-06 55.8 49 55.1
CANSAT25G3014 Cannabis sativa HOM05D000029 ORTHO05D000854 4.8e-06 55.8 39 74.4
Haze_22658 Corylus avellana HOM05D000029 ORTHO05D000854 4.8e-06 55.8 39 69.2
Gohir.A02G082800 Gossypium hirsutum HOM05D000029 ORTHO05D000854 4.8e-06 55.8 39 71.8
Gohir.D02G098300 Gossypium hirsutum HOM05D000029 ORTHO05D000854 4.8e-06 55.8 39 71.8
Gorai.005G112100 Gossypium raimondii HOM05D000029 ORTHO05D000854 4.8e-06 55.8 39 71.8
RcHm_v2.0_Chr6g0303151 Rosa chinensis HOM05D000029 ORTHO05D000854 4.8e-06 55.8 39 69.2
Hund05177 Selenicereus undatus HOM05D000029 ORTHO05D000854 4.8e-06 55.8 74 45.9
Migut.C00856 Erythranthe guttata HOM05D000029 ORTHO05D000854 6.2e-06 55.5 36 72.2
Lj3g0005112 Lotus japonicus HOM05D000029 ORTHO05D000854 6.2e-06 55.5 70 48.6
MBI07_g26535_MAGBIO Magnolia biondii HOM05D000228 ORTHO05D004880 6.2e-06 55.5 43 62.8
MD08G1010700 Malus domestica HOM05D000029 ORTHO05D000854 6.2e-06 55.5 39 71.8
Nn5g30753 Nelumbo nucifera HOM05D000029 ORTHO05D000854 6.2e-06 55.5 39 71.8
Oeu014167.2 Olea europaea HOM05D000029 ORTHO05D000854 6.2e-06 55.5 39 69.2
Lsat_1_v5_gn_2_12620 Lactuca sativa HOM05D000029 ORTHO05D000854 8.1e-06 55.1 36 75.0


User provided reference genes

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