Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0140300 Rhododendron simsii HOM05D006551 ORTHO05D008546 1.4e-147 526.2 244 100.0
CSS0008489 Camellia sinensis var. sinensis HOM05D006551 ORTHO05D008546 1.2e-79 300.4 175 79.4
CSS0047745 Camellia sinensis var. sinensis HOM05D006551 ORTHO05D008546 1.2e-79 300.4 175 79.4
Dinv15335 Davidia involucrata HOM05D006551 ORTHO05D008546 1.1e-75 287.3 175 77.1
Nn1g07524 Nelumbo nucifera HOM05D006551 ORTHO05D008546 4.7e-71 271.9 181 69.6
Prupe.4G003400 Prunus persica HOM05D006551 ORTHO05D008546 1.3e-68 263.8 176 69.3
TAR629G1611 Trochodendron aralioides HOM05D006551 ORTHO05D008546 1.7e-68 263.5 158 74.1
Medtr2g027110 Medicago truncatula HOM05D006551 ORTHO05D008546 6.3e-68 261.5 163 73.0
QL05p067740 Quercus lobata HOM05D006551 ORTHO05D008546 8.2e-68 261.2 169 69.2
Hma1.2p1_1175F.1_g264060 Hydrangea macrophylla HOM05D006551 ORTHO05D008546 2.4e-67 259.6 168 72.6
TPR.G17557 Trifolium pratense HOM05D006551 ORTHO05D008546 3.1e-67 259.2 163 72.4
Atru.chr1.1073 Acer truncatum HOM05D006551 ORTHO05D008546 9.1e-67 257.7 157 75.2
Glyma.09G014800 Glycine max HOM05D006551 ORTHO05D008546 1.5e-66 256.9 172 67.4
Hma1.2p1_1175F.1_g264070 Hydrangea macrophylla HOM05D006551 ORTHO05D008546 7.7e-66 254.6 167 72.5
Ca_00765_v3 Cicer arietinum L. HOM05D006551 ORTHO05D008546 1.3e-65 253.8 159 71.7
Manes.09G083300 Manihot esculenta HOM05D006551 ORTHO05D008546 1.3e-65 253.8 172 68.0
Nitab4.5_0006294g0080 Nicotiana tabacum HOM05D006551 ORTHO05D008546 1.3e-65 253.8 159 67.9
Thecc.06G241400 Theobroma cacao HOM05D006551 ORTHO05D008546 1.3e-65 253.8 162 70.4
FvH4_3g00300 Fragaria vesca HOM05D006551 ORTHO05D008546 3.8e-65 252.3 173 67.1
TWI38G1730 Tripterygium wilfordii HOM05D006551 ORTHO05D008546 3.8e-65 252.3 167 68.9
Lj6g0027493 Lotus japonicus HOM05D006551 ORTHO05D008546 5.0e-65 251.9 151 73.5
Sc17g0008010 Simmondsia chinensis HOM05D006551 ORTHO05D008546 5.0e-65 251.9 148 76.4
RcHm_v2.0_Chr5g0000451 Rosa chinensis HOM05D006551 ORTHO05D008546 6.5e-65 251.5 172 67.4
Phvul.006G137400 Phaseolus vulgaris HOM05D006551 ORTHO05D008546 1.1e-64 250.8 172 65.7
Cfa000032 Carpinus fangiana HOM05D006551 ORTHO05D008546 1.4e-64 250.4 151 72.8
Sopen04g007100 Solanum pennellii HOM05D006551 ORTHO05D008546 3.2e-64 249.2 154 70.1
Gorai.011G008500 Gossypium raimondii HOM05D006551 ORTHO05D008546 4.2e-64 248.8 158 68.4
Phvul.006G137611 Phaseolus vulgaris HOM05D006551 ORTHO05D008546 4.2e-64 248.8 172 65.7
SGA_v2.0_scaffold7G03692 Striga asiatica HOM05D006551 ORTHO05D008546 5.5e-64 248.4 176 63.1
Solyc04g015080.4 Solanum lycopersicum HOM05D006551 ORTHO05D008546 9.4e-64 247.7 150 71.3
CiPaw.10G082200 Carya illinoinensis HOM05D006551 ORTHO05D008546 1.2e-63 247.3 158 70.9
Nitab4.5_0000147g0330 Nicotiana tabacum HOM05D006551 ORTHO05D008546 1.6e-63 246.9 165 64.8
Peaxi162Scf00811g00222 Petunia axillaris HOM05D006551 ORTHO05D008546 2.7e-63 246.1 169 63.3
Lalb_Chr20g0119561 Lupinus albus HOM05D006551 ORTHO05D008546 3.6e-63 245.7 158 69.6
Gohir.D10G007800 Gossypium hirsutum HOM05D006551 ORTHO05D008546 4.7e-63 245.4 151 69.5
Gohir.A10G007900 Gossypium hirsutum HOM05D006551 ORTHO05D008546 6.1e-63 245.0 158 67.1
PGSC0003DMG400015008 Solanum tuberosum HOM05D006551 ORTHO05D008546 1.8e-62 243.4 154 67.5
Duzib160G0007 Durio zibethinus HOM05D006551 ORTHO05D008546 2.3e-62 243.0 164 68.3
MD10G1339500 Malus domestica HOM05D006551 ORTHO05D008546 3.0e-62 242.7 179 66.5
Cc09_g00290 Coffea canephora HOM05D006551 ORTHO05D008546 6.7e-62 241.5 147 72.1
Aa31LG2G12400 Aethionema arabicum HOM05D006551 ORTHO05D008546 8.8e-62 241.1 169 66.9
THA.LOC104815473 Tarenaya hassleriana HOM05D006551 ORTHO05D008546 8.8e-62 241.1 166 66.9
VMungo0540G0952 Vigna mungo HOM05D006551 ORTHO05D008546 1.1e-61 240.7 172 63.4
HPP92_018202 Vanilla planifolia HOM05D006551 ORTHO05D008546 1.5e-61 240.4 171 63.7
Oeu025969.1 Olea europaea HOM05D006551 ORTHO05D008546 2.6e-61 239.6 186 61.3
Sabra06G0003800 Salix brachista HOM05D006551 ORTHO05D008546 2.6e-61 239.6 158 67.7
arahy.Tifrunner.gnm1.ann1.TFI8LM Arachis hypogaea HOM05D006551 ORTHO05D008546 3.3e-61 239.2 173 63.6
MSTRG.7126 Avicennia marina HOM05D006551 ORTHO05D008546 3.3e-61 239.2 170 63.5
ClCG01G021210 Citrullus lanatus HOM05D006551 ORTHO05D008546 3.3e-61 239.2 152 68.4
COL.COLO4_31943 Corchorus olitorius HOM05D000879 ORTHO05D002864 3.3e-61 239.2 150 70.0
SalBow8G1397 Salvia bowleyana HOM05D006551 ORTHO05D008546 4.4e-61 238.8 162 65.4
SalBow8G2449 Salvia bowleyana HOM05D006551 ORTHO05D008546 4.4e-61 238.8 162 65.4
Lsat_1_v5_gn_7_12961 Lactuca sativa HOM05D006551 ORTHO05D008546 5.7e-61 238.4 170 63.5
PGR004G0828 Punica granatum HOM05D006551 ORTHO05D008546 5.7e-61 238.4 172 62.8
Potri.006G004500 Populus trichocarpa HOM05D006551 ORTHO05D008546 9.7e-61 237.7 158 69.0
Migut.M01446 Erythranthe guttata HOM05D006551 ORTHO05D008546 1.3e-60 237.3 161 65.8
Aqoxy1G04265 Aquilegia oxysepala HOM05D006551 ORTHO05D008546 1.7e-60 236.9 153 69.3
PSO210G1263 Papaver somniferum HOM05D006551 ORTHO05D008546 1.7e-60 236.9 160 66.9
Ciclev10016440m.g Citrus clementina HOM05D006551 ORTHO05D008546 3.7e-60 235.7 158 67.1
arahy.Tifrunner.gnm1.ann1.HFV92P Arachis hypogaea HOM05D006551 ORTHO05D008546 4.8e-60 235.3 173 62.4
MELO3C008006.2 Cucumis melo HOM05D006551 ORTHO05D008546 6.3e-60 235.0 156 66.0
CsaV3_6G048230 Cucumis sativus L. HOM05D006551 ORTHO05D008546 8.2e-60 234.6 152 65.8
PGR042G3561 Punica granatum HOM05D006551 ORTHO05D008546 3.1e-59 232.6 152 64.5
Eucgr.E03848 Eucalyptus grandis HOM05D006551 ORTHO05D008546 5.3e-59 231.9 157 63.7
PSO210G0886 Papaver somniferum HOM05D006551 ORTHO05D008546 1.6e-58 230.3 161 63.4
A09p57680 Brassica napus HOM05D006551 ORTHO05D008546 2.0e-58 229.9 147 69.4
Lj1C1247T0 Lonicera japonica HOM05D006551 ORTHO05D008546 7.7e-58 228.0 154 66.2
CAN.G1263.6 Capsicum annuum HOM05D006551 ORTHO05D008546 1.3e-57 227.3 138 71.7
Eucgr.E03850 Eucalyptus grandis HOM05D006551 ORTHO05D008546 1.3e-57 227.3 152 63.8
BcaB08g35054 Brassica carinata HOM05D006551 ORTHO05D008546 1.7e-57 226.9 147 68.7
unitig_37.g12177 Utricularia gibba HOM05D006551 ORTHO05D008546 2.2e-57 226.5 159 64.2
HanXRQChr05g0129031 Helianthus annuus HOM05D006551 ORTHO05D008546 2.9e-57 226.1 156 64.1
AL4G11740 Arabidopsis lyrata HOM05D006551 ORTHO05D008546 3.8e-57 225.7 147 67.3
Eucgr.L00150 Eucalyptus grandis HOM05D006551 ORTHO05D008546 5.0e-57 225.3 139 73.4
BcaC07g41084 Brassica carinata HOM05D006551 ORTHO05D008546 8.5e-57 224.6 147 68.7
BcaC07g41085 Brassica carinata HOM05D006551 ORTHO05D008546 8.5e-57 224.6 147 68.7
C08p40880 Brassica napus HOM05D006551 ORTHO05D008546 8.5e-57 224.6 147 68.7
BolC8t51654H Brassica oleracea HOM05D006551 ORTHO05D008546 8.5e-57 224.6 168 61.3
Carub.0004s0140 Capsella rubella HOM05D006551 ORTHO05D008546 8.5e-57 224.6 147 67.3
Sed0011139 Sechium edule HOM05D006551 ORTHO05D008546 1.1e-56 224.2 148 65.5
AT2G22260 Arabidopsis thaliana HOM05D006551 ORTHO05D008546 1.9e-56 223.4 147 66.7
CARHR113490 Cardamine hirsuta HOM05D006551 ORTHO05D008546 1.9e-56 223.4 145 68.3
BraA09t41161Z Brassica rapa HOM05D006551 ORTHO05D008546 5.5e-56 221.9 159 63.5
ECA248G0604 Erigeron canadensis HOM05D006551 ORTHO05D008546 1.2e-55 220.7 155 63.2
EL10Ac8g20269 Beta vulgaris HOM05D006551 ORTHO05D008546 1.0e-54 217.6 147 65.3
Hund08692 Selenicereus undatus HOM05D006551 ORTHO05D008546 1.0e-54 217.6 178 55.1
Zm00001eb380830 Zea mays HOM05D006551 ORTHO05D008546 6.7e-54 214.9 146 65.8
DCAR_002245 Daucus carota HOM05D006551 ORTHO05D008546 5.7e-53 211.8 147 61.9
vmacro03605 Vaccinium macrocarpon HOM05D006551 ORTHO05D008546 1.3e-52 210.7 102 93.1
Ah.14g087400 Amaranthus hybridus HOM05D006551 ORTHO05D008546 2.8e-52 209.5 173 56.1
AUR62021809 Chenopodium quinoa HOM05D006551 ORTHO05D008546 1.2e-50 204.1 161 58.4
Cpa.g.sc27.224 Carica papaya HOM05D006551 ORTHO05D008546 2.0e-50 203.4 146 64.4
Psat1g172360 Pisum sativum HOM05D006551 ORTHO05D008546 5.5e-48 195.3 101 83.2
SpUn1059_0010 Schrenkiella parvula HOM05D006551 ORTHO05D008546 4.5e-42 175.6 96 79.2
Haze_07021 Corylus avellana HOM05D006551 ORTHO05D008546 1.9e-40 170.2 158 55.1
ATR0751G145 Amborella trichopoda HOM05D006551 ORTHO05D008546 4.2e-40 169.1 100 73.0
AagrBONN_evm.TU.Sc2ySwM_362.1805 Anthoceros agrestis HOM05D006551 ORTHO05D008546 1.2e-39 167.5 157 49.7
SEGI_23146 Sequoiadendron giganteum HOM05D006551 ORTHO05D008546 1.4e-35 154.1 157 48.4
AagrBONN_evm.TU.Sc2ySwM_369.541 Anthoceros agrestis HOM05D006551 ORTHO05D008546 1.2e-34 151.0 150 44.7
AUR62012856 Chenopodium quinoa HOM05D006551 ORTHO05D008546 2.0e-34 150.2 99 64.6
Peaxi162Scf00827g00057 Petunia axillaris HOM05D006551 ORTHO05D008546 2.7e-34 149.8 112 62.5
Psat2g019160 Pisum sativum HOM05D006551 ORTHO05D008546 7.8e-34 148.3 113 62.8
CBR_g3891 Chara braunii HOM05D006551 ORTHO05D008546 4.4e-29 132.5 182 36.3
SHI31456 Sapria himalayana HOM05D006551 ORTHO05D008546 2.4e-27 126.7 113 55.8
SHI31451 Sapria himalayana HOM05D006551 ORTHO05D008546 4.4e-21 105.9 66 72.7
Sed0010073 Sechium edule HOM05D006551 ORTHO05D008546 1.9e-16 90.5 79 49.4
Solyc12g056880.2 Solanum lycopersicum HOM05D006551 ORTHO05D008546 1.1e-14 84.7 96 50.0
VMungo0540G1416 Vigna mungo HOM05D000555 ORTHO05D001906 2.2e-12 77.0 65 52.3
Os06g0286310 Oryza sativa ssp. japonica HOM05D006551 ORTHO05D008546 6.6e-09 65.5 57 50.9
Sp4g01310 Schrenkiella parvula HOM05D006551 ORTHO05D008546 6.6e-09 65.5 43 58.1
HanXRQChr17g0567191 Helianthus annuus HOM05D000289 ORTHO05D000208 2.1e-07 60.5 51 49.0
Glyma.15G120500 Glycine max HOM05D006551 ORTHO05D008546 3.6e-07 59.7 43 62.8
Psat1g141560 Pisum sativum HOM05D006551 ORTHO05D008546 8.9e-06 55.1 37 64.9


User provided reference genes

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