Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0204300 Rhododendron simsii HOM05D004712 ORTHO05D005306 1.0e-204 716.5 346 100.0
CSS0005003 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 3.6e-162 575.1 346 79.5
Actinidia21731 Actinidia chinensis HOM05D004712 ORTHO05D005306 8.1e-162 573.9 346 79.8
TAR624G0834 Trochodendron aralioides HOM05D004712 ORTHO05D005306 2.6e-152 542.3 336 77.7
GSVIVG01016906001 Vitis vinifera HOM05D004712 ORTHO05D005306 4.5e-152 541.6 340 75.3
GSVIVG01035336001 Vitis vinifera HOM05D004712 ORTHO05D005306 1.3e-151 540.0 337 76.0
Dinv23416 Davidia involucrata HOM05D004712 ORTHO05D005306 2.1e-149 532.7 336 75.9
Nn6g35377 Nelumbo nucifera HOM05D004712 ORTHO05D005306 6.0e-149 531.2 336 75.9
Nn6g35381 Nelumbo nucifera HOM05D004712 ORTHO05D005306 6.7e-148 527.7 343 73.8
QL05p017273 Quercus lobata HOM05D004712 ORTHO05D005306 6.7e-148 527.7 340 74.4
QL05p017569 Quercus lobata HOM05D004712 ORTHO05D005306 1.6e-146 523.1 340 74.1
Rhsim08G0230100 Rhododendron simsii HOM05D004712 ORTHO05D005306 8.2e-146 520.8 384 66.4
PGSC0003DMG401002514 Solanum tuberosum HOM05D004712 ORTHO05D005306 5.8e-144 514.6 338 71.9
Ciclev10008867m.g Citrus clementina HOM05D004712 ORTHO05D005306 7.6e-144 514.2 336 72.9
Prupe.1G416100 Prunus persica HOM05D004712 ORTHO05D005306 1.0e-143 513.8 337 73.0
Aqoxy7G03946 Aquilegia oxysepala HOM05D004712 ORTHO05D005306 1.7e-143 513.1 321 75.1
CANSAT25G2372 Cannabis sativa HOM05D004712 ORTHO05D005306 2.2e-143 512.7 337 71.8
CsaV3_2G025770 Cucumis sativus L. HOM05D004712 ORTHO05D005306 2.9e-143 512.3 337 72.1
QL02p001773 Quercus lobata HOM05D004712 ORTHO05D005306 3.8e-143 511.9 340 73.2
ClCG08G016850 Citrullus lanatus HOM05D004712 ORTHO05D005306 4.9e-143 511.5 337 71.8
MD08G1074400 Malus domestica HOM05D004712 ORTHO05D005306 1.9e-142 509.6 337 73.0
Nitab4.5_0005661g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 5.5e-142 508.1 338 72.8
Gohir.D03G057300 Gossypium hirsutum HOM05D004712 ORTHO05D005306 7.1e-142 507.7 334 69.8
RcHm_v2.0_Chr6g0310381 Rosa chinensis HOM05D004712 ORTHO05D005306 7.1e-142 507.7 337 71.5
Atru.chr7.2032 Acer truncatum HOM05D004712 ORTHO05D005306 3.5e-141 505.4 309 75.7
Manes.03G046000 Manihot esculenta HOM05D004712 ORTHO05D005306 7.9e-141 504.2 332 72.9
Migut.A00161 Erythranthe guttata HOM05D004712 ORTHO05D005306 1.8e-140 503.1 331 71.3
Peaxi162Scf00038g01243 Petunia axillaris HOM05D004712 ORTHO05D005306 2.3e-140 502.7 339 72.0
FAN20G0488 Fragaria x ananassa HOM05D004712 ORTHO05D005306 8.7e-140 500.7 328 72.0
Thecc.09G050100 Theobroma cacao HOM05D004712 ORTHO05D005306 1.5e-139 500.0 332 71.7
FvH4_2g32310 Fragaria vesca HOM05D004712 ORTHO05D005306 1.9e-139 499.6 328 72.0
Gohir.A05G044400 Gossypium hirsutum HOM05D004712 ORTHO05D005306 1.9e-139 499.6 332 72.0
COL.COLO4_21017 Corchorus olitorius HOM05D004712 ORTHO05D005306 2.5e-139 499.2 307 76.9
SalBow4G3242 Salvia bowleyana HOM05D004712 ORTHO05D005306 2.5e-139 499.2 329 71.1
FAN27G0349 Fragaria x ananassa HOM05D004712 ORTHO05D005306 4.3e-139 498.4 328 72.0
TPR.G13042 Trifolium pratense HOM05D004712 ORTHO05D005306 7.4e-139 497.7 336 69.6
TWI63G0904 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 9.7e-139 497.3 330 72.1
Hma1.2p1_1266F.1_g271360 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 2.2e-138 496.1 307 76.5
Gohir.D05G046000 Gossypium hirsutum HOM05D004712 ORTHO05D005306 2.8e-138 495.7 332 71.1
Potri.018G058900 Populus trichocarpa HOM05D004712 ORTHO05D005306 2.8e-138 495.7 338 70.7
vmacro17006 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 2.8e-138 495.7 406 64.3
CiPaw.15G042700 Carya illinoinensis HOM05D004712 ORTHO05D005306 3.7e-138 495.4 337 70.6
Duzib168G2010 Durio zibethinus HOM05D004712 ORTHO05D005306 3.7e-138 495.4 337 70.6
CSS0042817 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 6.3e-138 494.6 324 75.0
FAN24G2925 Fragaria x ananassa HOM05D004712 ORTHO05D005306 1.4e-137 493.4 328 71.3
FAN15G0413 Fragaria x ananassa HOM05D004712 ORTHO05D005306 1.8e-137 493.0 328 71.3
Ca_13194_v3 Cicer arietinum L. HOM05D004712 ORTHO05D005306 5.3e-137 491.5 335 71.0
Hund03367 Selenicereus undatus HOM05D004712 ORTHO05D005306 5.3e-137 491.5 332 72.0
Cc08_g10100 Coffea canephora HOM05D004712 ORTHO05D005306 9.0e-137 490.7 331 70.4
HanXRQChr17g0538901 Helianthus annuus HOM05D004712 ORTHO05D005306 2.6e-136 489.2 337 69.1
THA.LOC104803739 Tarenaya hassleriana HOM05D004712 ORTHO05D005306 2.6e-136 489.2 337 68.2
VMungo0647G0552 Vigna mungo HOM05D004712 ORTHO05D005306 1.0e-135 487.3 343 69.1
ATR0789G022 Amborella trichopoda HOM05D004712 ORTHO05D005306 2.9e-135 485.7 337 69.1
PSO210G7282 Papaver somniferum HOM05D004712 ORTHO05D005306 2.9e-135 485.7 326 70.6
AUR62009206 Chenopodium quinoa HOM05D004712 ORTHO05D005306 5.0e-135 485.0 332 69.9
ECA246G0363 Erigeron canadensis HOM05D004712 ORTHO05D005306 5.0e-135 485.0 312 72.8
Lalb_Chr22g0355941 Lupinus albus HOM05D004712 ORTHO05D005306 5.0e-135 485.0 338 68.0
PSO210G0832 Papaver somniferum HOM05D004712 ORTHO05D005306 6.5e-135 484.6 326 70.2
CARHR115280 Cardamine hirsuta HOM05D004712 ORTHO05D005306 1.4e-134 483.4 340 67.1
Medtr1g016970 Medicago truncatula HOM05D004712 ORTHO05D005306 1.4e-134 483.4 340 68.8
Potri.006G234000 Populus trichocarpa HOM05D004712 ORTHO05D005306 1.9e-134 483.0 338 68.6
Glyma.14G091700 Glycine max HOM05D004712 ORTHO05D005306 4.2e-134 481.9 342 68.1
Glyma.17G231700 Glycine max HOM05D004712 ORTHO05D005306 9.3e-134 480.7 339 68.1
Peaxi162Scf00840g00117 Petunia axillaris HOM05D004712 ORTHO05D005306 1.6e-133 479.9 330 69.4
Psat6g019200 Pisum sativum HOM05D004712 ORTHO05D005306 2.1e-133 479.6 336 68.5
Lj5g0015176 Lotus japonicus HOM05D004712 ORTHO05D005306 2.7e-133 479.2 338 69.8
AT2G25910 Arabidopsis thaliana HOM05D004712 ORTHO05D005306 6.1e-133 478.0 340 65.9
MELO3C010771.2 Cucumis melo HOM05D004712 ORTHO05D005306 6.1e-133 478.0 323 69.7
Duzib150G0899 Durio zibethinus HOM05D004712 ORTHO05D005306 7.9e-133 477.6 338 68.6
EL10Ac2g03950 Beta vulgaris HOM05D004712 ORTHO05D005306 1.0e-132 477.2 332 68.1
Haze_18228 Corylus avellana HOM05D004712 ORTHO05D005306 1.8e-132 476.5 337 70.3
Nitab4.5_0010821g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 2.3e-132 476.1 310 73.2
BcaB06g29616 Brassica carinata HOM05D004712 ORTHO05D005306 3.9e-132 475.3 340 65.3
Sc09g0009600 Simmondsia chinensis HOM05D004712 ORTHO05D005306 3.9e-132 475.3 340 68.5
Sp4g05810 Schrenkiella parvula HOM05D004712 ORTHO05D005306 5.1e-132 474.9 340 65.6
Cfa017921 Carpinus fangiana HOM05D004712 ORTHO05D005306 8.8e-132 474.2 337 68.8
Phvul.001G032800 Phaseolus vulgaris HOM05D004712 ORTHO05D005306 1.5e-131 473.4 347 66.3
BcaC02g08320 Brassica carinata HOM05D004712 ORTHO05D005306 5.7e-131 471.5 341 65.1
BolC4t27113H Brassica oleracea HOM05D004712 ORTHO05D005306 5.7e-131 471.5 341 65.1
Sabra06G0182200 Salix brachista HOM05D004712 ORTHO05D005306 5.7e-131 471.5 336 68.8
Solyc08g065880.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 5.7e-131 471.5 326 67.8
A04p20130 Brassica napus HOM05D004712 ORTHO05D005306 7.4e-131 471.1 341 65.1
C04p55830 Brassica napus HOM05D004712 ORTHO05D005306 7.4e-131 471.1 341 65.1
BraA04t17594Z Brassica rapa HOM05D004712 ORTHO05D005306 7.4e-131 471.1 341 65.1
Gohir.A02G116301 Gossypium hirsutum HOM05D004712 ORTHO05D005306 7.4e-131 471.1 307 69.4
Sopen08g019580 Solanum pennellii HOM05D004712 ORTHO05D005306 7.4e-131 471.1 326 67.8
AL4G17960 Arabidopsis lyrata HOM05D004712 ORTHO05D005306 1.3e-130 470.3 341 65.7
Thhalv10002033m.g Eutrema salsugineum HOM05D004712 ORTHO05D005306 6.3e-130 468.0 337 65.3
PGR031G0938 Punica granatum HOM05D004712 ORTHO05D005306 1.8e-129 466.5 321 68.5
DCAR_004451 Daucus carota HOM05D004712 ORTHO05D005306 2.4e-129 466.1 311 72.7
Aa31LG5G9770 Aethionema arabicum HOM05D004712 ORTHO05D005306 1.5e-128 463.4 351 63.8
Lsat_1_v5_gn_3_27140 Lactuca sativa HOM05D004712 ORTHO05D005306 1.5e-128 463.4 341 64.8
Sabra18G0050600 Salix brachista HOM05D004712 ORTHO05D005306 4.5e-128 461.8 369 62.9
AUR62040203 Chenopodium quinoa HOM05D004712 ORTHO05D005306 5.9e-128 461.5 332 67.5
SEGI_23712 Sequoiadendron giganteum HOM05D004712 ORTHO05D005306 7.7e-128 461.1 319 68.3
TWI34G1658 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 6.5e-127 458.0 321 68.5
arahy.Tifrunner.gnm1.ann1.289CQF Arachis hypogaea HOM05D004712 ORTHO05D005306 1.2e-125 453.8 346 64.5
arahy.Tifrunner.gnm1.ann1.QZ1T53 Arachis hypogaea HOM05D004712 ORTHO05D005306 1.2e-125 453.8 333 65.8
Os01g0566900 Oryza sativa ssp. japonica HOM05D004712 ORTHO05D005306 2.1e-125 453.0 315 68.3
Sed0015351 Sechium edule HOM05D004712 ORTHO05D005306 6.1e-125 451.4 330 67.3
Nitab4.5_0005029g0040 Nicotiana tabacum HOM05D004712 ORTHO05D005306 1.8e-124 449.9 332 64.8
MBI04_g12189_MAGBIO Magnolia biondii HOM05D004712 ORTHO05D005306 5.1e-124 448.4 354 65.3
Nitab4.5_0000359g0220 Nicotiana tabacum HOM05D004712 ORTHO05D005306 6.7e-124 448.0 332 64.8
Solyc03g121250.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 3.3e-123 445.7 283 73.9
Dinv30410 Davidia involucrata HOM05D004712 ORTHO05D005306 3.7e-122 442.2 263 79.8
vmacro05273 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 3.7e-122 442.2 333 65.8
Gorai.009G047400 Gossypium raimondii HOM05D004712 ORTHO05D005306 1.1e-121 440.7 295 71.2
HPP92_009150 Vanilla planifolia HOM05D004712 ORTHO05D005306 1.1e-121 440.7 339 61.4
Lj5A50G64 Lonicera japonica HOM05D004712 ORTHO05D005306 2.0e-120 436.4 290 71.0
AUR62031977 Chenopodium quinoa HOM05D004712 ORTHO05D005306 2.6e-120 436.0 310 64.5
Zm00001eb356940 Zea mays HOM05D004712 ORTHO05D005306 1.0e-119 434.1 330 64.8
Sopen01g026340 Solanum pennellii HOM05D000014 ORTHO05D005306 1.7e-119 433.3 313 66.1
Zm00001eb159970 Zea mays HOM05D004712 ORTHO05D005306 6.5e-119 431.4 310 67.7
CAN.G20.6 Capsicum annuum HOM05D004712 ORTHO05D005306 4.2e-118 428.7 299 67.6
Lj7A695G32 Lonicera japonica HOM05D004712 ORTHO05D005306 2.3e-116 422.9 317 65.9
Mapoly0072s0029 Marchantia polymorpha HOM05D004712 ORTHO05D005306 2.6e-115 419.5 314 64.0
AUR62040198 Chenopodium quinoa HOM05D004712 ORTHO05D005306 3.1e-113 412.5 313 64.5
AagrBONN_evm.TU.Sc2ySwM_228.3302 Anthoceros agrestis HOM05D004712 ORTHO05D005306 1.2e-112 410.6 306 63.4
Sopen03g040060 Solanum pennellii HOM05D004712 ORTHO05D005306 1.0e-111 407.5 267 73.0
Ah.10g034640 Amaranthus hybridus HOM05D004712 ORTHO05D005306 1.3e-111 407.1 355 56.3
MD15G1062100 Malus domestica HOM05D004712 ORTHO05D005306 3.8e-111 405.6 330 61.5
Eucgr.C00628 Eucalyptus grandis HOM05D004712 ORTHO05D005306 2.5e-110 402.9 264 73.5
Pp3c15_8210 Physcomitrium patens HOM05D004712 ORTHO05D005306 6.3e-106 388.3 315 59.7
Manes.16G077100 Manihot esculenta HOM05D004712 ORTHO05D005306 1.7e-103 380.2 243 74.5
SMO174G0103 Selaginella moellendorffii HOM05D004712 ORTHO05D005306 3.8e-103 379.0 312 57.7
COL.COLO4_30565 Corchorus olitorius HOM05D004712 ORTHO05D005306 2.7e-101 372.9 263 67.7
CAN.G1143.35 Capsicum annuum HOM05D004712 ORTHO05D005306 2.8e-98 362.8 245 69.4
AUR62022272 Chenopodium quinoa HOM05D004712 ORTHO05D005306 2.7e-88 329.7 233 64.8
Glyma.04G087900 Glycine max HOM05D004712 ORTHO05D005306 1.7e-87 327.0 318 56.6
Carub.0004s0573 Capsella rubella HOM05D004712 ORTHO05D005306 2.3e-87 326.6 223 68.6
Solyc01g060200.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 5.6e-78 295.4 305 50.2
Pp3c9_13080 Physcomitrium patens HOM05D004712 ORTHO05D005306 4.7e-77 292.4 237 60.3
unitig_748.g8268 Utricularia gibba HOM05D004712 ORTHO05D005306 8.0e-77 291.6 301 48.8
unitig_32.g10885 Utricularia gibba HOM05D004712 ORTHO05D005306 3.9e-71 272.7 268 52.2
Gorai.003G060400 Gossypium raimondii HOM05D004712 ORTHO05D005306 2.6e-67 260.0 179 69.3
CDE06G1081 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 4.6e-64 249.2 167 69.5
Cpa.g.sc1834.1 Carica papaya HOM05D004712 ORTHO05D005306 9.5e-62 241.5 173 67.1
SGA_v2.0_scaffold88G27214 Striga asiatica HOM05D004712 ORTHO05D005306 1.7e-55 220.7 139 71.9
Cpa.g.c30793.3 Carica papaya HOM05D004712 ORTHO05D005306 2.4e-52 210.3 129 72.9
CDE06G1637 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 1.2e-48 198.0 114 79.8
Glyma.20G062400 Glycine max HOM05D004712 ORTHO05D005306 3.2e-33 146.7 92 75.0
ATR0626G141 Amborella trichopoda HOM05D004712 ORTHO05D005306 3.8e-26 123.2 172 43.0
Cpa.g.sc131.9 Carica papaya HOM05D004712 ORTHO05D005306 2.5e-25 120.6 79 59.5
Cpa.g.sc131.11 Carica papaya HOM05D004712 ORTHO05D005306 2.5e-22 110.5 64 76.6
Hma1.2p1_0051F.1_g029750 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 2.5e-22 110.5 66 75.8
Cpa.g.sc131.8 Carica papaya HOM05D004712 ORTHO05D005306 4.3e-22 109.8 77 70.1
Cc04_g02330 Coffea canephora HOM05D004712 ORTHO05D005306 2.2e-21 107.5 172 39.5
TAR636G2080 Trochodendron aralioides HOM05D000850 ORTHO05D000266 6.3e-21 105.9 79 68.4
COL.COLO4_30564 Corchorus olitorius HOM05D004712 ORTHO05D005306 3.9e-15 86.7 55 72.7
MSTRG.22613 Avicennia marina HOM05D004712 ORTHO05D005306 8.8e-15 85.5 70 58.6
EL10Ac9g21163 Beta vulgaris HOM05D004712 ORTHO05D005306 5.9e-11 72.8 81 46.9
Cre03.g152425 Chlamydomonas reinhardtii HOM05D004712 ORTHO05D005306 8.5e-10 68.9 213 26.3
MCO15G238 Micromonas commoda HOM05D015906 ORTHO05D005306 1.2e-08 65.1 95 35.8
Nn4g24691 Nelumbo nucifera HOM05D004712 ORTHO05D005306 6.1e-08 62.8 41 63.4
Cre03.g205921 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D005306 3.9e-07 60.1 213 27.7
Cre03.g152400 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D028597 4.4e-06 56.6 186 26.3
FAN26G3161 Fragaria x ananassa HOM05D002024 ORTHO05D004352 7.4e-06 55.8 154 27.9
FvH4_1g28500 Fragaria vesca HOM05D002024 ORTHO05D004352 9.7e-06 55.5 154 27.9
FAN19G0777 Fragaria x ananassa HOM05D002024 ORTHO05D004352 9.7e-06 55.5 154 27.9
FAN23G2178 Fragaria x ananassa HOM05D002024 ORTHO05D004352 9.7e-06 55.5 155 28.4


User provided reference genes

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