Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0124400 Rhododendron simsii HOM05D005206 ORTHO05D006219 3.7e-312 1073.9 542 100.0
vmacro16280 Vaccinium macrocarpon HOM05D005206 ORTHO05D006219 3.1e-261 904.8 559 83.5
CSS0048376 Camellia sinensis var. sinensis HOM05D005206 ORTHO05D006219 8.0e-257 890.2 548 81.9
Actinidia15006 Actinidia chinensis HOM05D005206 ORTHO05D006219 7.3e-250 867.1 565 78.8
Dinv30996 Davidia involucrata HOM05D005206 ORTHO05D006219 3.6e-241 838.2 548 76.6
Dinv31107 Davidia involucrata HOM05D005206 ORTHO05D006219 8.9e-224 780.4 512 76.4
Hma1.2p1_1049F.1_g251730 Hydrangea macrophylla HOM05D005206 ORTHO05D006219 8.4e-222 773.9 542 73.4
TAR371G0117 Trochodendron aralioides HOM05D005206 ORTHO05D006219 1.6e-217 759.6 551 72.4
GSVIVG01020174001 Vitis vinifera HOM05D005206 ORTHO05D006219 3.4e-215 751.9 551 69.9
Nitab4.5_0000257g0230 Nicotiana tabacum HOM05D005206 ORTHO05D006219 2.2e-214 749.2 548 72.8
Lj3A1048T22 Lonicera japonica HOM05D005206 ORTHO05D006219 5.4e-213 744.6 545 70.5
Manes.01G196700 Manihot esculenta HOM05D005206 ORTHO05D006219 2.1e-212 742.7 544 70.6
Potri.010G094800 Populus trichocarpa HOM05D005206 ORTHO05D006219 2.1e-212 742.7 542 71.8
Nitab4.5_0005722g0070 Nicotiana tabacum HOM05D005206 ORTHO05D006219 2.3e-211 739.2 544 71.3
Atru.chr11.1960 Acer truncatum HOM05D005206 ORTHO05D006219 1.5e-210 736.5 543 70.3
QL03p062489 Quercus lobata HOM05D005206 ORTHO05D006219 1.6e-209 733.0 547 68.7
TWI36G1721 Tripterygium wilfordii HOM05D005206 ORTHO05D006219 2.8e-209 732.3 554 68.8
Migut.L01447 Erythranthe guttata HOM05D005206 ORTHO05D006219 3.6e-209 731.9 543 70.5
THA.LOC104816736 Tarenaya hassleriana HOM05D005206 ORTHO05D006219 3.6e-209 731.9 557 68.0
Ciclev10031184m.g Citrus clementina HOM05D005206 ORTHO05D006219 1.2e-207 726.9 554 68.1
CsaV3_5G031880 Cucumis sativus L. HOM05D005206 ORTHO05D006219 1.2e-207 726.9 546 68.1
Gorai.002G164200 Gossypium raimondii HOM05D005206 ORTHO05D006219 2.6e-207 725.7 542 68.5
Thecc.02G242400 Theobroma cacao HOM05D005206 ORTHO05D006219 3.4e-207 725.3 542 69.0
CARHR010660 Cardamine hirsuta HOM05D005206 ORTHO05D006219 4.5e-207 724.9 545 69.4
CAN.G1160.5 Capsicum annuum HOM05D005206 ORTHO05D006219 5.8e-207 724.5 548 69.3
Sp1g09150 Schrenkiella parvula HOM05D005206 ORTHO05D006219 5.8e-207 724.5 546 70.3
Lsat_1_v5_gn_9_83200 Lactuca sativa HOM05D005206 ORTHO05D006219 9.9e-207 723.8 543 68.7
Thhalv10009477m.g Eutrema salsugineum HOM05D005206 ORTHO05D006219 1.3e-206 723.4 543 69.1
Gohir.A01G141200 Gossypium hirsutum HOM05D005206 ORTHO05D006219 2.2e-206 722.6 542 68.1
RcHm_v2.0_Chr4g0444541 Rosa chinensis HOM05D005206 ORTHO05D006219 2.2e-206 722.6 542 68.3
SalBow2G2775 Salvia bowleyana HOM05D005206 ORTHO05D006219 2.2e-206 722.6 550 68.5
Lj2g0017178 Lotus japonicus HOM05D005206 ORTHO05D006219 2.9e-206 722.2 548 67.9
arahy.Tifrunner.gnm1.ann1.05N2IU Arachis hypogaea HOM05D005206 ORTHO05D006219 3.8e-206 721.8 540 68.7
Eucgr.B02561 Eucalyptus grandis HOM05D005206 ORTHO05D006219 4.9e-206 721.5 543 68.0
Nn4g22885 Nelumbo nucifera HOM05D005206 ORTHO05D006219 4.9e-206 721.5 543 69.2
RcHm_v2.0_Chr4g0444551 Rosa chinensis HOM05D005206 ORTHO05D006219 8.4e-206 720.7 545 68.3
Sabra10G0067100 Salix brachista HOM05D005206 ORTHO05D006219 1.4e-205 719.9 571 66.9
Aqoxy3G03082 Aquilegia oxysepala HOM05D005206 ORTHO05D006219 2.4e-205 719.2 553 68.2
Sed0001006 Sechium edule HOM05D005206 ORTHO05D006219 7.1e-205 717.6 546 66.7
FvH4_4g35030 Fragaria vesca HOM05D005206 ORTHO05D006219 3.5e-204 715.3 545 68.3
Aa31LG1G4440 Aethionema arabicum HOM05D005206 ORTHO05D006219 6.0e-204 714.5 546 69.0
Phvul.004G071000 Phaseolus vulgaris HOM05D005206 ORTHO05D006219 1.8e-203 713.0 548 67.5
DCAR_007103 Daucus carota HOM05D005206 ORTHO05D006219 3.9e-203 711.8 553 66.4
MSTRG.7873 Avicennia marina HOM05D005206 ORTHO05D006219 5.1e-203 711.4 542 67.3
BcaC07g38608 Brassica carinata HOM05D005206 ORTHO05D006219 8.7e-203 710.7 546 69.4
Cfa009102 Carpinus fangiana HOM05D005206 ORTHO05D006219 1.1e-202 710.3 548 67.0
Carub.0001s0995 Capsella rubella HOM05D005206 ORTHO05D006219 3.3e-202 708.8 546 68.5
Lalb_Chr09g0326511 Lupinus albus HOM05D005206 ORTHO05D006219 5.6e-202 708.0 540 66.7
arahy.Tifrunner.gnm1.ann1.U6W7RM Arachis hypogaea HOM05D005206 ORTHO05D006219 2.8e-201 705.7 571 65.0
PSO063G3522 Papaver somniferum HOM05D005206 ORTHO05D006219 2.4e-200 702.6 558 67.0
PSO832G4147 Papaver somniferum HOM05D005206 ORTHO05D006219 2.4e-200 702.6 552 66.7
Glyma.02G065600 Glycine max HOM05D005206 ORTHO05D006219 2.0e-199 699.5 543 66.5
BraA08t35305Z Brassica rapa HOM05D005206 ORTHO05D006219 3.4e-199 698.7 548 67.3
Ah.03g132350 Amaranthus hybridus HOM05D005206 ORTHO05D006219 1.0e-198 697.2 548 64.1
BcaC07g38570 Brassica carinata HOM05D005206 ORTHO05D006219 1.7e-198 696.4 547 66.5
C08p13780 Brassica napus HOM05D005206 ORTHO05D006219 1.7e-198 696.4 547 66.5
C08p13760 Brassica napus HOM05D005206 ORTHO05D006219 2.9e-198 695.7 547 66.7
MBI15_g34233_MAGBIO Magnolia biondii HOM05D005206 ORTHO05D006219 3.8e-198 695.3 600 62.7
Sc11g0001370 Simmondsia chinensis HOM05D005206 ORTHO05D006219 4.9e-198 694.9 569 64.0
CANSAT56G0905 Cannabis sativa HOM05D005206 ORTHO05D006219 6.5e-198 694.5 546 66.5
Solyc05g006120.3 Solanum lycopersicum HOM05D005206 ORTHO05D006219 4.2e-197 691.8 545 67.5
PGR119G2380 Punica granatum HOM05D005206 ORTHO05D006219 1.2e-196 690.3 548 67.0
BolC8t49011H Brassica oleracea HOM05D005206 ORTHO05D006219 1.6e-196 689.9 547 66.4
Sopen05g002140 Solanum pennellii HOM05D005206 ORTHO05D006219 3.5e-196 688.7 551 66.1
A08p33920 Brassica napus HOM05D005206 ORTHO05D006219 4.6e-196 688.3 572 64.7
Medtr7g039450 Medicago truncatula HOM05D005206 ORTHO05D006219 4.6e-196 688.3 536 65.7
Peaxi162Scf00421g00833 Petunia axillaris HOM05D005206 ORTHO05D006219 4.6e-196 688.3 546 67.4
Haze_12137 Corylus avellana HOM05D005206 ORTHO05D006219 7.9e-196 687.6 591 62.3
EL10Ac8g20565 Beta vulgaris HOM05D005206 ORTHO05D006219 3.0e-195 685.6 548 65.3
Medtr5g040170 Medicago truncatula HOM05D005206 ORTHO05D006219 6.7e-195 684.5 536 65.3
Gohir.D01G132600 Gossypium hirsutum HOM05D005206 ORTHO05D006219 1.1e-194 683.7 524 68.3
FvH4_4g35010 Fragaria vesca HOM05D005206 ORTHO05D006219 2.5e-194 682.6 542 65.3
HanXRQChr16g0527551 Helianthus annuus HOM05D005206 ORTHO05D006219 4.3e-194 681.8 545 65.7
SGA_v2.0_scaffold166G38340 Striga asiatica HOM05D005206 ORTHO05D006219 1.3e-193 680.2 640 59.1
Hund25315 Selenicereus undatus HOM05D005206 ORTHO05D006219 1.3e-190 670.2 561 63.5
ECA236G3606 Erigeron canadensis HOM05D005206 ORTHO05D006219 1.2e-188 663.7 541 63.6
Duzib248G0782 Durio zibethinus HOM05D005206 ORTHO05D006219 2.7e-188 662.5 542 63.3
AUR62039408 Chenopodium quinoa HOM05D005206 ORTHO05D006219 4.6e-188 661.8 571 62.2
ATR1149G100 Amborella trichopoda HOM05D005206 ORTHO05D006219 4.3e-186 655.2 554 60.6
MELO3C034123.2 Cucumis melo HOM05D005206 ORTHO05D006219 2.5e-178 629.4 586 59.2
TWI36G0196 Tripterygium wilfordii HOM05D005206 ORTHO05D006219 3.3e-178 629.0 492 66.5
Os06g0237200 Oryza sativa ssp. japonica HOM05D005206 ORTHO05D006219 4.8e-177 625.2 550 59.5
SalBow2G3534 Salvia bowleyana HOM05D005206 ORTHO05D006219 3.1e-176 622.5 557 60.9
AT1G10520 Arabidopsis thaliana HOM05D005206 ORTHO05D006219 5.9e-175 618.2 484 67.4
COL.COLO4_38096 Corchorus olitorius HOM05D005206 ORTHO05D006219 1.7e-174 616.7 505 64.8
Ca_18093_v3 Cicer arietinum L. HOM05D005206 ORTHO05D006219 3.2e-173 612.5 522 61.5
TPR.G13491 Trifolium pratense HOM05D005206 ORTHO05D006219 2.1e-172 609.8 496 63.5
CiPaw.06G074900 Carya illinoinensis HOM05D005206 ORTHO05D006219 2.7e-172 609.4 370 80.5
ClCG05G025020 Citrullus lanatus HOM05D005206 ORTHO05D006219 1.0e-171 607.4 546 60.8
SEGI_33189 Sequoiadendron giganteum HOM05D005206 ORTHO05D006219 1.0e-171 607.4 570 56.3
AL1G21320 Arabidopsis lyrata HOM05D005206 ORTHO05D006219 6.7e-171 604.7 461 68.3
Hund05954 Selenicereus undatus HOM05D005206 ORTHO05D006219 1.1e-170 604.0 564 59.2
Zm00001eb371940 Zea mays HOM05D005206 ORTHO05D006219 3.3e-170 602.4 561 56.3
FAN12G3755 Fragaria x ananassa HOM05D005206 ORTHO05D006219 1.7e-161 573.5 545 58.2
Psat2g114280 Pisum sativum HOM05D005206 ORTHO05D006219 1.7e-158 563.5 467 61.5
unitig_748.g7742 Utricularia gibba HOM05D005206 ORTHO05D006219 4.7e-156 555.4 393 71.0
FAN22G1639 Fragaria x ananassa HOM05D005206 ORTHO05D006219 3.7e-153 545.8 535 57.0
Prupe.1G259900 Prunus persica HOM05D005206 ORTHO05D006219 4.8e-153 545.4 432 65.5
FAN12G3075 Fragaria x ananassa HOM05D005206 ORTHO05D006219 4.2e-149 532.3 558 53.9
AagrBONN_evm.TU.Sc2ySwM_344.2272 Anthoceros agrestis HOM05D005206 ORTHO05D006219 9.4e-149 531.2 535 51.8
Pp3c15_19010 Physcomitrium patens HOM05D005206 ORTHO05D006219 1.4e-136 490.7 558 47.8
AL1G24280 Arabidopsis lyrata HOM05D005206 ORTHO05D006219 8.0e-132 474.9 275 83.3
MD16G1086700 Malus domestica HOM05D005206 ORTHO05D006219 1.4e-131 474.2 271 83.0
QL03p062590 Quercus lobata HOM05D005206 ORTHO05D006219 3.9e-126 456.1 534 51.3
Mapoly0057s0101 Marchantia polymorpha HOM05D005206 ORTHO05D006219 5.6e-125 452.2 459 54.5
Oeu025446.1 Olea europaea HOM05D005206 ORTHO05D006219 1.2e-124 451.1 382 63.4
SMO353G0008 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 4.1e-120 436.0 342 62.9
Cc11_g14230 Coffea canephora HOM05D005206 ORTHO05D006219 4.3e-109 399.4 373 60.1
CDE07G1306 Ceratophyllum demersum HOM05D005206 ORTHO05D006219 9.6e-109 398.3 530 46.2
CBR_g3482 Chara braunii HOM05D005206 ORTHO05D006219 1.7e-105 387.5 320 57.8
AUR62026580 Chenopodium quinoa HOM05D005206 ORTHO05D006219 3.8e-97 359.8 217 76.5
HPP92_017067 Vanilla planifolia HOM05D005206 ORTHO05D006219 1.1e-93 348.2 404 51.2
Cc11_g14240 Coffea canephora HOM05D005206 ORTHO05D006219 1.2e-87 328.2 186 82.3
FAN07G1959 Fragaria x ananassa HOM05D005206 ORTHO05D006219 6.7e-86 322.4 270 61.5
Mapoly0078s0005 Marchantia polymorpha HOM05D005206 ORTHO05D006219 3.7e-84 316.6 543 35.9
PGSC0003DMG400015600 Solanum tuberosum HOM05D005206 ORTHO05D006219 4.8e-84 316.2 186 81.7
SHI08107 Sapria himalayana HOM05D005206 ORTHO05D006219 1.8e-83 314.3 407 49.4
CBR_g48616 Chara braunii HOM05D005206 ORTHO05D006219 3.7e-76 290.0 504 38.5
FAN17G0295 Fragaria x ananassa HOM05D005206 ORTHO05D006219 3.1e-75 287.0 302 54.6
AagrBONN_evm.TU.Sc2ySwM_362.251 Anthoceros agrestis HOM05D005206 ORTHO05D006219 4.5e-74 283.1 489 36.8
HPP92_017072 Vanilla planifolia HOM05D005206 ORTHO05D006219 3.2e-72 276.9 173 76.3
SMO235G0045 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 1.2e-71 275.0 312 44.2
MD16G1086600 Malus domestica HOM05D005206 ORTHO05D006219 8.2e-68 262.3 276 54.3
SMO347G0124 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 1.0e-65 255.4 314 42.7
Cpa.g.sc5.345 Carica papaya HOM05D005206 ORTHO05D006219 1.6e-63 248.1 140 82.1
Cpa.g.sc5.344 Carica papaya HOM05D005206 ORTHO05D006219 5.1e-62 243.0 282 52.5
AUR62026578 Chenopodium quinoa HOM05D005206 ORTHO05D006219 6.3e-60 236.1 285 49.1
VMungo0464G1917 Vigna mungo HOM05D005206 ORTHO05D006219 2.6e-58 230.7 269 50.9
Cpa.g.sc5.348 Carica papaya HOM05D005206 ORTHO05D006219 9.1e-51 205.7 112 86.6
Cfa026399 Carpinus fangiana HOM05D005206 ORTHO05D006219 3.5e-42 177.2 355 33.5
HPP92_017071 Vanilla planifolia HOM05D005206 ORTHO05D006219 2.5e-40 171.0 254 45.3
VMungo0464G2026 Vigna mungo HOM05D005206 ORTHO05D006219 1.2e-34 152.1 93 78.5
SHI08109 Sapria himalayana HOM05D005206 ORTHO05D006219 3.5e-34 150.6 122 62.3
PRCOL_00003765 Prasinoderma coloniale HOM05D005206 ORTHO05D006219 1.5e-32 145.2 455 25.7
FvH4_6g23350 Fragaria vesca HOM05D005206 ORTHO05D006219 3.2e-32 144.1 82 81.7
MCO16G526 Micromonas commoda HOM05D005206 ORTHO05D006219 2.3e-30 137.9 580 25.5
FvH4_5g07370 Fragaria vesca HOM05D003058 ORTHO05D003464 2.9e-25 120.9 99 63.6
RcHm_v2.0_Chr3g0484611 Rosa chinensis HOM05D005206 ORTHO05D006219 2.6e-21 107.8 62 80.6
Cre17.g716101 Chlamydomonas reinhardtii HOM05D005206 ORTHO05D006219 3.9e-17 94.0 193 32.6
Ca_04200_v3 Cicer arietinum L. HOM05D005206 ORTHO05D006219 1.2e-13 82.4 55 69.1
HPP92_017068 Vanilla planifolia HOM05D005206 ORTHO05D006219 1.9e-11 75.1 59 59.3
RcHm_v2.0_Chr4g0401081 Rosa chinensis HOM05D005206 ORTHO05D006219 5.0e-09 67.0 45 68.9


User provided reference genes

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