Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0057100 Rhododendron simsii HOM05D002125 ORTHO05D002105 7.2e-40 166.8 83 100.0
Rhsim04G0124000 Rhododendron simsii HOM05D002125 ORTHO05D002105 7.7e-26 120.2 85 75.3
vmacro08918 Vaccinium macrocarpon HOM05D002125 ORTHO05D002105 8.0e-23 110.2 83 72.3
Dinv12184 Davidia involucrata HOM05D002125 ORTHO05D002105 1.8e-22 109.0 85 68.2
Dinv35421 Davidia involucrata HOM05D002125 ORTHO05D002105 4.0e-22 107.8 85 68.2
Actinidia20774 Actinidia chinensis HOM05D002125 ORTHO05D002105 6.7e-22 107.1 85 68.2
CSS0015901 Camellia sinensis var. sinensis HOM05D002125 ORTHO05D002105 6.7e-22 107.1 84 66.7
CSS0047715 Camellia sinensis var. sinensis HOM05D002125 ORTHO05D002105 6.7e-22 107.1 84 66.7
Hma1.2p1_2488F.1_g323150 Hydrangea macrophylla HOM05D002125 ORTHO05D002105 9.7e-21 103.2 84 66.7
Rhsim05G0226700 Rhododendron simsii HOM05D002125 ORTHO05D002105 1.3e-20 102.8 84 66.7
vmacro20333 Vaccinium macrocarpon HOM05D002125 ORTHO05D002105 2.2e-20 102.1 82 65.9
Migut.J00087 Erythranthe guttata HOM05D002125 ORTHO05D002105 2.8e-20 101.7 85 63.5
Lj3A945T19 Lonicera japonica HOM05D002125 ORTHO05D002105 3.7e-20 101.3 85 63.5
Actinidia32548 Actinidia chinensis HOM05D002125 ORTHO05D002105 4.8e-20 100.9 85 64.7
CSS0021162 Camellia sinensis var. sinensis HOM05D002125 ORTHO05D002105 6.3e-20 100.5 85 63.5
Nitab4.5_0003850g0070 Nicotiana tabacum HOM05D002125 ORTHO05D002105 6.3e-20 100.5 87 62.1
CAN.G955.3 Capsicum annuum HOM05D002125 ORTHO05D002105 8.2e-20 100.1 87 62.1
Peaxi162Scf00264g00860 Petunia axillaris HOM05D002125 ORTHO05D002105 1.1e-19 99.8 84 61.9
PGSC0003DMG400011864 Solanum tuberosum HOM05D002125 ORTHO05D002105 1.1e-19 99.8 87 60.9
Nitab4.5_0000355g0180 Nicotiana tabacum HOM05D002125 ORTHO05D002105 1.4e-19 99.4 87 60.9
GSVIVG01030257001 Vitis vinifera HOM05D002125 ORTHO05D002105 1.8e-19 99.0 82 65.9
Oeu023749.1 Olea europaea HOM05D002125 ORTHO05D002105 4.1e-19 97.8 85 61.2
SalBow4G2763 Salvia bowleyana HOM05D002125 ORTHO05D002105 7.0e-19 97.1 83 63.9
Solyc10g076290.2 Solanum lycopersicum HOM05D002125 ORTHO05D002105 7.0e-19 97.1 87 59.8
Cc00_g13900 Coffea canephora HOM05D002125 ORTHO05D002105 1.2e-18 96.3 84 60.7
Sopen10g027910 Solanum pennellii HOM05D002125 ORTHO05D002105 1.6e-18 95.9 87 58.6
TAR623G1068 Trochodendron aralioides HOM05D002125 ORTHO05D002105 2.7e-18 95.1 84 60.7
arahy.Tifrunner.gnm1.ann1.W9TR1A Arachis hypogaea HOM05D002125 ORTHO05D002105 3.5e-18 94.7 84 58.3
arahy.Tifrunner.gnm1.ann1.WL5YV9 Arachis hypogaea HOM05D002125 ORTHO05D002105 3.5e-18 94.7 84 58.3
MD12G1181200 Malus domestica HOM05D002125 ORTHO05D002105 3.5e-18 94.7 84 61.9
FvH4_6g10500 Fragaria vesca HOM05D002125 ORTHO05D002105 4.5e-18 94.4 84 59.5
FAN02G2848 Fragaria x ananassa HOM05D002125 ORTHO05D002105 4.5e-18 94.4 84 59.5
FAN05G3110 Fragaria x ananassa HOM05D002125 ORTHO05D002105 4.5e-18 94.4 84 59.5
FAN05G3214 Fragaria x ananassa HOM05D002125 ORTHO05D002105 4.5e-18 94.4 84 59.5
FAN14G4647 Fragaria x ananassa HOM05D002125 ORTHO05D002105 4.5e-18 94.4 84 59.5
TAR369G0073 Trochodendron aralioides HOM05D002125 ORTHO05D002105 4.5e-18 94.4 84 60.7
Manes.09G112800 Manihot esculenta HOM05D002125 ORTHO05D002105 5.9e-18 94.0 81 64.2
Potri.006G105400 Populus trichocarpa HOM05D002125 ORTHO05D002105 5.9e-18 94.0 84 61.9
Potri.016G128400 Populus trichocarpa HOM05D002125 ORTHO05D002105 5.9e-18 94.0 84 60.7
CiPaw.09G216100 Carya illinoinensis HOM05D002125 ORTHO05D002105 1.0e-17 93.2 84 59.5
ClCG10G022490 Citrullus lanatus HOM05D002125 ORTHO05D002105 1.0e-17 93.2 84 61.9
MELO3C009128.2 Cucumis melo HOM05D002125 ORTHO05D002105 1.0e-17 93.2 84 61.9
CsaV3_3G033360 Cucumis sativus L. HOM05D002125 ORTHO05D002105 1.0e-17 93.2 84 61.9
MSTRG.5534 Avicennia marina HOM05D002125 ORTHO05D002105 1.3e-17 92.8 71 66.2
FAN09G3322 Fragaria x ananassa HOM05D002125 ORTHO05D002105 1.3e-17 92.8 84 58.3
CiPaw.13G068100 Carya illinoinensis HOM05D002125 ORTHO05D002105 1.7e-17 92.4 84 59.5
Sabra16G0130000 Salix brachista HOM05D002125 ORTHO05D002105 2.2e-17 92.0 84 59.5
Rhsim05G0173000 Rhododendron simsii HOM05D002125 ORTHO05D002105 2.9e-17 91.7 70 70.0
Nn2g11037 Nelumbo nucifera HOM05D002125 ORTHO05D002105 5.0e-17 90.9 79 63.3
unitig_26.g8959 Utricularia gibba HOM05D002125 ORTHO05D002105 6.5e-17 90.5 85 56.5
CANSAT35G0731 Cannabis sativa HOM05D002125 ORTHO05D002105 8.5e-17 90.1 84 58.3
MD04G1167900 Malus domestica HOM05D002125 ORTHO05D002105 8.5e-17 90.1 84 59.5
RcHm_v2.0_Chr3g0461461 Rosa chinensis HOM05D002125 ORTHO05D002105 8.5e-17 90.1 84 58.3
CSS0007269 Camellia sinensis var. sinensis HOM05D002125 ORTHO05D002105 1.1e-16 89.7 78 62.8
Prupe.6G286100 Prunus persica HOM05D002125 ORTHO05D002105 1.9e-16 89.0 84 59.5
SGA_v2.0_scaffold85G26673 Striga asiatica HOM05D002125 ORTHO05D002105 1.9e-16 89.0 80 60.0
Cfa017102 Carpinus fangiana HOM05D002125 ORTHO05D002105 2.5e-16 88.6 84 56.0
Haze_21098 Corylus avellana HOM05D002125 ORTHO05D002105 2.5e-16 88.6 84 56.0
Thecc.09G359000 Theobroma cacao HOM05D002125 ORTHO05D002105 3.2e-16 88.2 84 58.3
EL10Ac7g16789 Beta vulgaris HOM05D002125 ORTHO05D002105 4.2e-16 87.8 84 57.1
Duzib093G1543 Durio zibethinus HOM05D002125 ORTHO05D002105 4.2e-16 87.8 84 58.3
Eucgr.J01853 Eucalyptus grandis HOM05D002125 ORTHO05D002105 4.2e-16 87.8 70 64.3
AUR62006299 Chenopodium quinoa HOM05D002125 ORTHO05D002105 5.5e-16 87.4 84 57.1
AUR62026344 Chenopodium quinoa HOM05D002125 ORTHO05D002105 5.5e-16 87.4 84 57.1
DCAR_018662 Daucus carota HOM05D002125 ORTHO05D002105 5.5e-16 87.4 71 63.4
Nn2g13283 Nelumbo nucifera HOM05D002125 ORTHO05D002105 5.5e-16 87.4 79 58.2
Potri.019G123400 Populus trichocarpa HOM05D002125 ORTHO05D002105 5.5e-16 87.4 81 59.3
COL.COLO4_11166 Corchorus olitorius HOM05D002125 ORTHO05D002105 7.2e-16 87.0 84 57.1
Eucgr.K02937 Eucalyptus grandis HOM05D002125 ORTHO05D002105 7.2e-16 87.0 82 56.1
Gorai.003G150800 Gossypium raimondii HOM05D002125 ORTHO05D002105 7.2e-16 87.0 80 58.8
Sed0004912 Sechium edule HOM05D002125 ORTHO05D002105 7.2e-16 87.0 84 58.3
Ciclev10000539m.g Citrus clementina HOM05D002125 ORTHO05D002105 9.4e-16 86.7 79 64.6
Dinv09681 Davidia involucrata HOM05D002125 ORTHO05D002105 9.4e-16 86.7 70 67.1
Prupe.6G046600 Prunus persica HOM05D002125 ORTHO05D002105 9.4e-16 86.7 79 60.8
Haze_24424 Corylus avellana HOM05D002125 ORTHO05D002105 1.2e-15 86.3 84 56.0
Thecc.05G005500 Theobroma cacao HOM05D002125 ORTHO05D002105 1.2e-15 86.3 84 56.0
Glyma.02G232700 Glycine max HOM05D002125 ORTHO05D002105 1.6e-15 85.9 86 57.0
HanXRQChr16g0511061 Helianthus annuus HOM05D002125 ORTHO05D002105 1.6e-15 85.9 70 58.6
Actinidia11543 Actinidia chinensis HOM05D002125 ORTHO05D002105 2.1e-15 85.5 71 64.8
Gohir.D03G143500 Gossypium hirsutum HOM05D002125 ORTHO05D002105 2.1e-15 85.5 81 56.8
Oeu050024.1 Olea europaea HOM05D002125 ORTHO05D002105 2.1e-15 85.5 84 52.4
QL01p025894 Quercus lobata HOM05D002125 ORTHO05D002105 2.1e-15 85.5 70 65.7
Sabra15G0051600 Salix brachista HOM05D002125 ORTHO05D002105 2.1e-15 85.5 80 58.8
Hund03802 Selenicereus undatus HOM05D002125 ORTHO05D002105 2.1e-15 85.5 86 57.0
TWI77G1029 Tripterygium wilfordii HOM05D002125 ORTHO05D002105 2.1e-15 85.5 82 57.3
Cfa011788 Carpinus fangiana HOM05D002125 ORTHO05D002105 2.7e-15 85.1 84 53.6
Glyma.14G200300 Glycine max HOM05D002125 ORTHO05D002105 2.7e-15 85.1 86 57.0
Oeu038715.1 Olea europaea HOM05D000081 ORTHO05D000036 2.7e-15 85.1 71 60.6
Sc20g0006750 Simmondsia chinensis HOM05D002125 ORTHO05D002105 2.7e-15 85.1 70 61.4
Duzib168G1340 Durio zibethinus HOM05D002125 ORTHO05D002105 3.6e-15 84.7 77 61.0
Gohir.A03G025000 Gossypium hirsutum HOM05D002125 ORTHO05D002105 3.6e-15 84.7 80 57.5
Gohir.D01G220201 Gossypium hirsutum HOM05D002125 ORTHO05D002105 3.6e-15 84.7 81 55.6
Gorai.002G266900 Gossypium raimondii HOM05D002125 ORTHO05D002105 3.6e-15 84.7 81 55.6
Aa31LG1G23340 Aethionema arabicum HOM05D002125 ORTHO05D002105 4.7e-15 84.3 84 56.0
MSTRG.17896 Avicennia marina HOM05D002125 ORTHO05D002105 4.7e-15 84.3 70 58.6
Duzib106G1864 Durio zibethinus HOM05D002125 ORTHO05D002105 4.7e-15 84.3 84 54.8
THA.LOC104816175 Tarenaya hassleriana HOM05D002125 ORTHO05D002105 4.7e-15 84.3 70 67.1
COL.COLO4_14438 Corchorus olitorius HOM05D002125 ORTHO05D002105 6.1e-15 84.0 70 60.0
GSVIVG01024623001 Vitis vinifera HOM05D002125 ORTHO05D002105 6.1e-15 84.0 84 56.0
Cpa.g.sc5.256 Carica papaya HOM05D002125 ORTHO05D002105 8.0e-15 83.6 79 58.2
DCAR_015355 Daucus carota HOM05D002125 ORTHO05D002105 8.0e-15 83.6 71 62.0
Lj3g0018906 Lotus japonicus HOM05D002125 ORTHO05D002105 8.0e-15 83.6 81 59.3
Lalb_Chr12g0207441 Lupinus albus HOM05D002125 ORTHO05D002105 8.0e-15 83.6 81 59.3
Ah.15g090380 Amaranthus hybridus HOM05D002125 ORTHO05D002105 1.0e-14 83.2 84 52.4
Ca_20368_v3 Cicer arietinum L. HOM05D002125 ORTHO05D002105 1.0e-14 83.2 84 53.6
Phvul.008G251200 Phaseolus vulgaris HOM05D002125 ORTHO05D002105 1.0e-14 83.2 86 55.8
Hund19853 Selenicereus undatus HOM05D002125 ORTHO05D002105 1.0e-14 83.2 84 54.8
QL07p033676 Quercus lobata HOM05D002125 ORTHO05D002105 1.8e-14 82.4 67 59.7
PGR004G0027 Punica granatum HOM05D002125 ORTHO05D002105 2.3e-14 82.0 70 58.6
VMungo0647G0746 Vigna mungo HOM05D002125 ORTHO05D002105 2.3e-14 82.0 70 61.4
Manes.18G145100 Manihot esculenta HOM05D002125 ORTHO05D002105 3.0e-14 81.6 81 56.8
Dinv28702 Davidia involucrata HOM05D002125 ORTHO05D002105 4.0e-14 81.3 84 54.8
Cpa.g.sc2.343 Carica papaya HOM05D002125 ORTHO05D002105 5.2e-14 80.9 70 60.0
Ah.08g209960 Amaranthus hybridus HOM05D002125 ORTHO05D002105 6.8e-14 80.5 84 53.6
MD11G1060100 Malus domestica HOM05D002125 ORTHO05D002105 8.8e-14 80.1 79 57.0
BcaB01g06117 Brassica carinata HOM05D002125 ORTHO05D002105 1.2e-13 79.7 70 64.3
A03p00120 Brassica napus HOM05D002125 ORTHO05D002105 1.2e-13 79.7 70 64.3
C03p00270 Brassica napus HOM05D002125 ORTHO05D002105 1.2e-13 79.7 70 64.3
BolC3t12601H Brassica oleracea HOM05D002125 ORTHO05D002105 1.2e-13 79.7 70 64.3
BraA03t09402Z Brassica rapa HOM05D002125 ORTHO05D002105 1.2e-13 79.7 70 64.3
ClCG02G019190 Citrullus lanatus HOM05D002125 ORTHO05D002105 1.2e-13 79.7 79 54.4
Sp6g40980 Schrenkiella parvula HOM05D002125 ORTHO05D002105 1.2e-13 79.7 70 62.9
BcaB01g06250 Brassica carinata HOM05D002125 ORTHO05D002105 1.5e-13 79.3 70 64.3
ECA236G3892 Erigeron canadensis HOM05D002125 ORTHO05D002105 2.0e-13 79.0 63 60.3
Peaxi162Scf00744g00225 Petunia axillaris HOM05D002125 ORTHO05D002105 2.0e-13 79.0 70 55.7
Lsat_1_v5_gn_8_103981 Lactuca sativa HOM05D002125 ORTHO05D002105 7.5e-13 77.0 70 54.3
Atru.chr8.2351 Acer truncatum HOM05D002125 ORTHO05D002105 9.8e-13 76.6 70 55.7
AT5G01720 Arabidopsis thaliana HOM05D002125 ORTHO05D002105 9.8e-13 76.6 70 61.4
CANSAT54G1695 Cannabis sativa HOM05D002125 ORTHO05D002105 9.8e-13 76.6 70 57.1
Carub.0006s0011 Capsella rubella HOM05D002125 ORTHO05D002105 2.2e-12 75.5 84 52.4
FAN21G0056 Fragaria x ananassa HOM05D002125 ORTHO05D002105 2.2e-12 75.5 86 46.5
AL6G10330 Arabidopsis lyrata HOM05D002125 ORTHO05D002105 2.8e-12 75.1 70 60.0
EL10Ac7g15876 Beta vulgaris HOM05D002125 ORTHO05D002105 2.8e-12 75.1 77 49.4
Medtr4g013255 Medicago truncatula HOM05D002125 ORTHO05D002105 2.8e-12 75.1 84 48.8
VMungo0331G0572 Vigna mungo HOM05D002125 ORTHO05D002105 2.8e-12 75.1 70 54.3
FvH4_3g39860 Fragaria vesca HOM05D002125 ORTHO05D002105 4.8e-12 74.3 86 46.5
FAN11G3761 Fragaria x ananassa HOM05D002125 ORTHO05D002105 4.8e-12 74.3 86 46.5
FAN16G2220 Fragaria x ananassa HOM05D002125 ORTHO05D002105 4.8e-12 74.3 86 46.5
Glyma.03G042600 Glycine max HOM05D002125 ORTHO05D002105 4.8e-12 74.3 70 54.3
Hma1.2p1_0501F.1_g167260 Hydrangea macrophylla HOM05D002125 ORTHO05D002105 4.8e-12 74.3 52 73.1
FAN25G2295 Fragaria x ananassa HOM05D002125 ORTHO05D002105 6.3e-12 73.9 86 46.5
Sed0011152 Sechium edule HOM05D002125 ORTHO05D002105 6.3e-12 73.9 79 51.9
MELO3C025685.2 Cucumis melo HOM05D002125 ORTHO05D002105 8.3e-12 73.6 70 54.3
CsaV3_6G018970 Cucumis sativus L. HOM05D002125 ORTHO05D002105 8.3e-12 73.6 70 54.3
Glyma.01G128200 Glycine max HOM05D002125 ORTHO05D002105 8.3e-12 73.6 70 54.3
Phvul.010G062400 Phaseolus vulgaris HOM05D002125 ORTHO05D002105 1.1e-11 73.2 70 52.9
AUR62036234 Chenopodium quinoa HOM05D002125 ORTHO05D002105 1.4e-11 72.8 71 49.3
RcHm_v2.0_Chr5g0071821 Rosa chinensis HOM05D002125 ORTHO05D002105 2.4e-11 72.0 70 54.3
AUR62009711 Chenopodium quinoa HOM05D002125 ORTHO05D002105 3.1e-11 71.6 71 49.3
ATR0594G089 Amborella trichopoda HOM05D002125 ORTHO05D002105 4.1e-11 71.2 67 53.7
CARHR212080 Cardamine hirsuta HOM05D002125 ORTHO05D002105 4.1e-11 71.2 70 54.3
Thhalv10012898m.g Eutrema salsugineum HOM05D002125 ORTHO05D002105 5.4e-11 70.9 70 55.7
TPR.G5280 Trifolium pratense HOM05D002125 ORTHO05D002105 9.1e-11 70.1 92 44.6
HPP92_015582 Vanilla planifolia HOM05D002125 ORTHO05D002105 9.1e-11 70.1 67 50.7
PSO017G2695 Papaver somniferum HOM05D002125 ORTHO05D002105 1.2e-10 69.7 71 52.1
Ciclev10011244m.g Citrus clementina HOM05D002125 ORTHO05D002105 1.6e-10 69.3 70 50.0
THA.LOC104799383 Tarenaya hassleriana HOM05D002125 ORTHO05D002105 2.0e-10 68.9 81 48.1
Cc01_g14960 Coffea canephora HOM05D002125 ORTHO05D002105 3.5e-10 68.2 70 57.1
Hund05045 Selenicereus undatus HOM05D002125 ORTHO05D002105 3.5e-10 68.2 82 47.6
Sc21g0004980 Simmondsia chinensis HOM05D002125 ORTHO05D002105 3.5e-10 68.2 70 50.0
PSO349G0138 Papaver somniferum HOM05D002125 ORTHO05D002105 1.3e-09 66.2 71 49.3
Sabra15G0048000 Salix brachista HOM05D002125 ORTHO05D002105 1.3e-09 66.2 58 63.8
Sabra19G0122000 Salix brachista HOM05D002125 ORTHO05D002105 1.3e-09 66.2 58 63.8
Sabra19G0132300 Salix brachista HOM05D002125 ORTHO05D002105 1.3e-09 66.2 58 63.8
Zm00001eb094050 Zea mays HOM05D002125 ORTHO05D002105 8.5e-09 63.5 70 50.0
SEGI_26861 Sequoiadendron giganteum HOM05D002125 ORTHO05D002105 1.1e-08 63.2 67 46.3
Zm00001eb163310 Zea mays HOM05D002125 ORTHO05D002105 1.5e-08 62.8 84 41.7
SEGI_04485 Sequoiadendron giganteum HOM05D002125 ORTHO05D002105 3.2e-08 61.6 67 44.8
Sabra15G0043400 Salix brachista HOM05D002125 ORTHO05D002105 4.2e-08 61.2 56 60.7
Sabra15G0044900 Salix brachista HOM05D002125 ORTHO05D002105 4.2e-08 61.2 56 60.7
Sabra15G0045600 Salix brachista HOM05D002125 ORTHO05D002105 4.2e-08 61.2 56 60.7
Sabra15G0060500 Salix brachista HOM05D002125 ORTHO05D002105 4.2e-08 61.2 56 60.7
SEGI_29687 Sequoiadendron giganteum HOM05D002125 ORTHO05D002105 7.2e-08 60.5 67 44.8
SEGI_38001 Sequoiadendron giganteum HOM05D002125 ORTHO05D002105 7.2e-08 60.5 74 43.2
SEGI_22429 Sequoiadendron giganteum HOM05D002125 ORTHO05D002105 9.4e-08 60.1 67 43.3
Zm00001eb261850 Zea mays HOM05D002125 ORTHO05D002105 1.6e-07 59.3 70 45.7
Os12g0108500 Oryza sativa ssp. japonica HOM05D002125 ORTHO05D002105 6.1e-07 57.4 47 53.2
Rhsim08G0195000 Rhododendron simsii HOM05D002125 ORTHO05D002105 8.0e-07 57.0 28 92.9
Os11g0108932 Oryza sativa ssp. japonica HOM05D002125 ORTHO05D002105 1.4e-06 56.2 46 54.3
Psat7g249400 Pisum sativum HOM05D002125 ORTHO05D002105 2.3e-06 55.5 100 37.0
AUR62039176 Chenopodium quinoa HOM05D002125 ORTHO05D002105 6.8e-06 53.9 62 50.0


User provided reference genes

Program Settings