Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim11G0049500 Rhododendron simsii HOM05D004433 ORTHO05D005251 0.0e+00 1313.9 671 100.0
vmacro00182 Vaccinium macrocarpon HOM05D004433 ORTHO05D005251 5.6e-252 874.4 661 74.3
CSS0005257 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 1.9e-228 796.2 648 69.1
CSS0005508 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 1.9e-228 796.2 648 69.1
Dinv27935 Davidia involucrata HOM05D004433 ORTHO05D005251 2.3e-221 772.7 630 68.1
Actinidia14688 Actinidia chinensis HOM05D004433 ORTHO05D005251 8.2e-219 764.2 667 64.6
TAR639G0002 Trochodendron aralioides HOM05D004433 ORTHO05D005251 2.9e-208 729.2 635 63.8
Ciclev10007803m.g Citrus clementina HOM05D004433 ORTHO05D005251 8.5e-208 727.6 661 63.5
MSTRG.25921 Avicennia marina HOM05D004433 ORTHO05D005251 4.7e-206 721.8 658 62.0
TWI34G1917 Tripterygium wilfordii HOM05D004433 ORTHO05D005251 1.4e-205 720.3 658 62.0
Migut.A00179 Erythranthe guttata HOM05D004433 ORTHO05D005251 3.3e-204 715.7 660 61.4
Oeu019243.1 Olea europaea HOM05D004433 ORTHO05D005251 7.5e-204 714.5 559 68.7
arahy.Tifrunner.gnm1.ann1.AK26AV Arachis hypogaea HOM05D004433 ORTHO05D005251 4.8e-203 711.8 658 61.6
Duzib150G0295 Durio zibethinus HOM05D004433 ORTHO05D005251 4.8e-203 711.8 655 61.2
DCAR_003083 Daucus carota HOM05D004433 ORTHO05D005251 1.4e-202 710.3 614 64.0
Atru.chr7.2050 Acer truncatum HOM05D004433 ORTHO05D005251 1.8e-202 709.9 630 63.5
Cfa013388 Carpinus fangiana HOM05D004433 ORTHO05D005251 2.4e-202 709.5 663 61.2
Thecc.09G048300 Theobroma cacao HOM05D004433 ORTHO05D005251 4.1e-202 708.8 657 61.3
GSVIVG01035316001 Vitis vinifera HOM05D004433 ORTHO05D005251 1.7e-200 703.4 622 62.7
CiPaw.08G027400 Carya illinoinensis HOM05D004433 ORTHO05D005251 8.5e-200 701.0 653 61.6
Gohir.D06G090400 Gossypium hirsutum HOM05D004433 ORTHO05D005251 1.9e-199 699.9 597 63.0
PGR031G3150 Punica granatum HOM05D004433 ORTHO05D005251 1.9e-199 699.9 630 62.1
Duzib168G1809 Durio zibethinus HOM05D004433 ORTHO05D005251 2.5e-199 699.5 607 62.8
FAN27G1484 Fragaria x ananassa HOM05D004433 ORTHO05D005251 4.2e-199 698.7 669 59.2
SalBow4G2164 Salvia bowleyana HOM05D004433 ORTHO05D005251 1.2e-198 697.2 629 63.3
Eucgr.C00613 Eucalyptus grandis HOM05D004433 ORTHO05D005251 2.1e-198 696.4 592 64.4
Gohir.A06G091200 Gossypium hirsutum HOM05D004433 ORTHO05D005251 2.1e-198 696.4 656 59.9
Nn8g39044 Nelumbo nucifera HOM05D004433 ORTHO05D005251 1.4e-197 693.7 671 60.1
FvH4_2g35220 Fragaria vesca HOM05D004433 ORTHO05D005251 2.3e-197 693.0 655 60.2
Medtr1g007320 Medicago truncatula HOM05D004433 ORTHO05D005251 4.0e-197 692.2 653 60.2
Gorai.010G104100 Gossypium raimondii HOM05D004433 ORTHO05D005251 1.2e-196 690.6 682 57.3
QL12p040912 Quercus lobata HOM05D004433 ORTHO05D005251 1.2e-196 690.6 649 59.9
Ca_03360_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 1.5e-196 690.3 563 66.3
RcHm_v2.0_Chr6g0306711 Rosa chinensis HOM05D004433 ORTHO05D005251 2.0e-196 689.9 655 60.2
Aqoxy5G01364 Aquilegia oxysepala HOM05D004433 ORTHO05D005251 1.3e-195 687.2 591 61.6
Nitab4.5_0008242g0010 Nicotiana tabacum HOM05D004433 ORTHO05D005251 1.3e-195 687.2 640 61.2
Sopen08g019860 Solanum pennellii HOM05D004433 ORTHO05D005251 1.7e-195 686.8 640 60.0
FAN20G2992 Fragaria x ananassa HOM05D004433 ORTHO05D005251 8.3e-195 684.5 662 59.2
THA.LOC104818595 Tarenaya hassleriana HOM05D004433 ORTHO05D005251 1.4e-194 683.7 561 64.7
Potri.018G057500 Populus trichocarpa HOM05D004433 ORTHO05D005251 5.4e-194 681.8 654 59.0
Solyc08g066180.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 5.4e-194 681.8 645 60.9
MBI04_g07004_MAGBIO Magnolia biondii HOM05D004433 ORTHO05D005251 7.0e-194 681.4 639 58.7
Glyma.14G144100 Glycine max HOM05D004433 ORTHO05D005251 9.1e-194 681.0 648 60.3
Lj1g0025930 Lotus japonicus HOM05D004433 ORTHO05D005251 1.2e-193 680.6 652 60.1
Lsat_1_v5_gn_6_7781 Lactuca sativa HOM05D004433 ORTHO05D005251 4.5e-193 678.7 653 59.9
CAN.G1444.6 Capsicum annuum HOM05D004433 ORTHO05D005251 1.0e-192 677.6 634 60.6
Phvul.001G078300 Phaseolus vulgaris HOM05D004433 ORTHO05D005251 1.3e-192 677.2 560 65.7
FAN15G1676 Fragaria x ananassa HOM05D004433 ORTHO05D005251 2.3e-192 676.4 673 57.8
HanXRQChr02g0047921 Helianthus annuus HOM05D004433 ORTHO05D005251 2.9e-192 676.0 651 59.6
Prupe.1G444400 Prunus persica HOM05D004433 ORTHO05D005251 9.5e-191 671.0 652 58.6
Lalb_Chr22g0360911 Lupinus albus HOM05D004433 ORTHO05D005251 2.8e-190 669.5 651 59.1
ATR0705G146 Amborella trichopoda HOM05D004433 ORTHO05D005251 3.6e-190 669.1 639 59.6
Sp4g05710 Schrenkiella parvula HOM05D004433 ORTHO05D005251 1.0e-189 667.5 658 58.7
Psat6g036080 Pisum sativum HOM05D004433 ORTHO05D005251 1.8e-189 666.8 651 58.7
VMungo1383G1648 Vigna mungo HOM05D004433 ORTHO05D005251 3.0e-189 666.0 562 64.4
Lj7C697T10 Lonicera japonica HOM05D004433 ORTHO05D005251 4.0e-189 665.6 626 59.6
CANSAT21G1878 Cannabis sativa HOM05D004433 ORTHO05D005251 5.2e-189 665.2 563 64.5
Sed0005675 Sechium edule HOM05D004433 ORTHO05D005251 6.8e-189 664.8 654 57.8
TPR.G24519 Trifolium pratense HOM05D004433 ORTHO05D005251 6.8e-189 664.8 571 63.2
arahy.Tifrunner.gnm1.ann1.YGB7WG Arachis hypogaea HOM05D004433 ORTHO05D005251 8.9e-189 664.5 656 59.1
BolC4t27102H Brassica oleracea HOM05D004433 ORTHO05D005251 1.2e-188 664.1 652 58.0
SGA_v2.0_scaffold103G30047 Striga asiatica HOM05D004433 ORTHO05D005251 1.5e-188 663.7 722 55.3
BcaB06g29637 Brassica carinata HOM05D004433 ORTHO05D005251 4.4e-188 662.1 650 58.0
A04p20080 Brassica napus HOM05D004433 ORTHO05D005251 4.4e-188 662.1 659 58.0
MD08G1110200 Malus domestica HOM05D004433 ORTHO05D005251 5.7e-188 661.8 661 57.6
C04p55760 Brassica napus HOM05D004433 ORTHO05D005251 1.7e-187 660.2 652 57.7
BraA04t17590Z Brassica rapa HOM05D004433 ORTHO05D005251 1.7e-187 660.2 660 58.0
CsaV3_3G048450 Cucumis sativus L. HOM05D004433 ORTHO05D005251 2.2e-187 659.8 652 57.7
ECA233G5497 Erigeron canadensis HOM05D004433 ORTHO05D005251 2.2e-187 659.8 564 63.8
ClCG11G015050 Citrullus lanatus HOM05D004433 ORTHO05D005251 2.8e-187 659.4 650 57.8
CANSAT21G2561 Cannabis sativa HOM05D004433 ORTHO05D005251 4.9e-187 658.7 563 64.5
AT2G25870 Arabidopsis thaliana HOM05D004433 ORTHO05D005251 1.1e-186 657.5 633 58.3
Aa31LG5G9810 Aethionema arabicum HOM05D004433 ORTHO05D005251 1.8e-186 656.8 621 59.3
MELO3C003474.2 Cucumis melo HOM05D004433 ORTHO05D005251 2.4e-186 656.4 651 57.8
Thhalv10001936m.g Eutrema salsugineum HOM05D004433 ORTHO05D005251 2.4e-186 656.4 656 58.1
PSO210G3373 Papaver somniferum HOM05D004433 ORTHO05D005251 3.1e-186 656.0 673 57.1
BcaB06g29638 Brassica carinata HOM05D004433 ORTHO05D005251 4.1e-186 655.6 660 56.2
Nitab4.5_0000318g0140 Nicotiana tabacum HOM05D004433 ORTHO05D005251 7.0e-186 654.8 641 59.3
Sc23g0005440 Simmondsia chinensis HOM05D004433 ORTHO05D005251 7.0e-186 654.8 558 62.7
CARHR115360 Cardamine hirsuta HOM05D004433 ORTHO05D005251 1.6e-185 653.7 648 57.4
Carub.0004s0569 Capsella rubella HOM05D004433 ORTHO05D005251 3.5e-185 652.5 653 57.7
AL4G17700 Arabidopsis lyrata HOM05D004433 ORTHO05D005251 5.9e-185 651.7 561 62.2
AUR62009222 Chenopodium quinoa HOM05D004433 ORTHO05D005251 7.8e-185 651.4 657 57.5
AUR62040221 Chenopodium quinoa HOM05D004433 ORTHO05D005251 1.5e-183 647.1 639 57.9
EL10Ac2g03971 Beta vulgaris HOM05D004433 ORTHO05D005251 1.9e-183 646.7 610 59.3
Prupe.1G444500 Prunus persica HOM05D004433 ORTHO05D005251 1.9e-183 646.7 538 63.9
CDE09G0966 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 4.7e-182 642.1 630 57.1
Ah.10g034740 Amaranthus hybridus HOM05D004433 ORTHO05D005251 3.1e-181 639.4 650 56.8
Hund03376 Selenicereus undatus HOM05D004433 ORTHO05D005251 3.1e-181 639.4 488 67.2
Peaxi162Scf00699g00520 Petunia axillaris HOM05D004433 ORTHO05D005251 8.3e-179 631.3 629 57.6
COL.COLO4_21003 Corchorus olitorius HOM05D004433 ORTHO05D005251 1.1e-175 620.9 593 59.5
Actinidia18212 Actinidia chinensis HOM05D004433 ORTHO05D005251 8.0e-174 614.8 513 65.7
Sabra18G0052000 Salix brachista HOM05D004433 ORTHO05D005251 1.3e-171 607.4 698 52.1
FvH4_2g35230 Fragaria vesca HOM05D004433 ORTHO05D005251 1.0e-168 597.8 599 55.8
Manes.16G073200 Manihot esculenta HOM05D004433 ORTHO05D005251 1.0e-168 597.8 654 54.9
Manes.03G060700 Manihot esculenta HOM05D004433 ORTHO05D005251 3.6e-166 589.3 558 59.0
FAN15G3540 Fragaria x ananassa HOM05D004433 ORTHO05D005251 3.2e-162 576.2 529 59.7
FAN27G0398 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.3e-160 570.9 594 54.2
ATR1159G027 Amborella trichopoda HOM05D004433 ORTHO05D005251 1.1e-159 567.8 575 55.7
RcHm_v2.0_Chr6g0306701 Rosa chinensis HOM05D004433 ORTHO05D005251 4.0e-157 559.3 528 58.3
Zm00001eb153790 Zea mays HOM05D004433 ORTHO05D005251 6.8e-157 558.5 656 48.8
MD08G1110300 Malus domestica HOM05D004433 ORTHO05D005251 8.9e-157 558.1 467 63.6
PSO210G0672 Papaver somniferum HOM05D004433 ORTHO05D005251 2.3e-152 543.5 666 50.6
Dinv23396 Davidia involucrata HOM05D004433 ORTHO05D005251 1.4e-146 524.2 430 65.6
Glyma.17G192300 Glycine max HOM05D004433 ORTHO05D005251 1.5e-143 514.2 525 57.0
Lj8A567T31 Lonicera japonica HOM05D004433 ORTHO05D005251 7.4e-135 485.3 366 68.0
Os01g0739400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 7.6e-132 475.3 584 47.1
Pp3c15_25010 Physcomitrium patens HOM05D004433 ORTHO05D005251 8.2e-118 428.7 661 42.2
Os02g0227000 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 3.8e-115 419.9 480 47.7
unitig_32.g11476 Utricularia gibba HOM05D004433 ORTHO05D005251 8.5e-115 418.7 567 46.6
Mapoly0124s0034 Marchantia polymorpha HOM05D004433 ORTHO05D005251 3.9e-112 409.8 535 44.1
Zm00001eb239610 Zea mays HOM05D004433 ORTHO05D005251 2.6e-108 397.1 521 45.1
Cc08_g09950 Coffea canephora HOM05D004433 ORTHO05D005251 5.5e-106 389.4 423 56.5
Oeu008300.1 Olea europaea HOM05D004433 ORTHO05D005251 1.5e-103 381.3 556 46.0
HPP92_005557 Vanilla planifolia HOM05D004433 ORTHO05D005251 3.7e-102 376.7 462 47.2
Ciclev10010169m.g Citrus clementina HOM05D004433 ORTHO05D005251 6.5e-99 365.9 485 49.1
Haze_21925 Corylus avellana HOM05D004433 ORTHO05D005251 4.7e-97 359.8 416 54.6
Ca_19223_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 1.6e-89 334.7 266 67.7
CBR_g31496 Chara braunii HOM05D004433 ORTHO05D005251 1.3e-86 325.1 474 40.7
Cc08_g09960 Coffea canephora HOM05D004433 ORTHO05D005251 3.5e-84 317.0 256 66.0
HPP92_003623 Vanilla planifolia HOM05D004433 ORTHO05D005251 1.5e-74 285.0 218 67.0
Os09g0388400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 3.3e-74 283.9 316 48.4
Cpa.g.sc7.220 Carica papaya HOM05D004433 ORTHO05D005251 1.1e-69 268.9 181 74.6
SEGI_35823 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 1.9e-66 258.1 254 52.8
Cpa.g.sc7.222 Carica papaya HOM05D004433 ORTHO05D005251 1.1e-61 242.3 236 59.3
Potri.006G235301 Populus trichocarpa HOM05D004433 ORTHO05D005251 8.6e-59 232.6 176 65.3
CDE02G1264 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 1.1e-56 225.7 132 81.1
FAN20G0434 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.8e-56 224.9 220 56.4
SMO352G0038 Selaginella moellendorffii HOM05D004433 ORTHO05D005251 3.4e-55 220.7 314 40.4
PRCOL_00001006 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 3.5e-52 210.7 429 33.1
SEGI_12418 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 6.0e-52 209.9 275 47.3
MCO02G391 Micromonas commoda HOM05D004433 ORTHO05D005251 2.0e-47 194.9 331 37.8
Ca_12764_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 2.9e-46 191.0 186 59.1
Hund19490 Selenicereus undatus HOM05D004433 ORTHO05D005251 3.5e-44 184.1 136 67.6
Hma1.2p1_0049F.1_g028280 Hydrangea macrophylla HOM05D004433 ORTHO05D005251 2.5e-42 177.9 113 77.0
Oeu059683.2 Olea europaea HOM05D004433 ORTHO05D005251 9.0e-32 142.9 106 65.1
Cre06.g252150 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 5.8e-31 140.2 322 34.8
Hund19491 Selenicereus undatus HOM05D004433 ORTHO05D005251 3.5e-28 131.0 128 57.0
Cre09.g402997 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 7.9e-28 129.8 213 39.4
CDE02G2445 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 1.4e-24 119.0 106 60.4
VMungo1215G2735 Vigna mungo HOM05D004433 ORTHO05D005251 4.0e-24 117.5 83 63.9
MCO10G003 Micromonas commoda HOM05D004433 ORTHO05D005251 2.6e-23 114.8 320 30.6
Solyc06g011570.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 3.8e-22 110.9 112 51.8
Sopen06g006790 Solanum pennellii HOM05D004433 ORTHO05D005251 1.3e-19 102.4 77 64.9
Lj8A567T30 Lonicera japonica HOM05D004433 ORTHO05D005251 8.7e-19 99.8 56 91.1
Gohir.A08G152250 Gossypium hirsutum HOM05D004433 ORTHO05D005251 1.5e-18 99.0 122 47.5
SGA_v2.0_scaffold266G46140 Striga asiatica HOM05D004433 ORTHO05D005251 3.3e-18 97.8 56 92.9
RcHm_v2.0_Chr6g0271151 Rosa chinensis HOM05D004433 ORTHO05D005251 3.7e-17 94.4 71 67.6
PRCOL_00006247 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 4.8e-17 94.0 316 29.4
Os09g0393801 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 3.1e-16 91.3 99 49.5
RcHm_v2.0_Chr6g0310261 Rosa chinensis HOM05D004433 ORTHO05D005251 5.3e-16 90.5 71 64.8
Os09g0393501 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.2e-15 89.4 99 48.5
HPP92_005558 Vanilla planifolia HOM05D004433 ORTHO05D005251 6.5e-14 83.6 53 79.2
TAR625G0121 Trochodendron aralioides HOM05D004433 ORTHO05D005251 2.4e-08 65.1 40 80.0
MD15G1112400 Malus domestica HOM05D004433 ORTHO05D005251 4.1e-08 64.3 36 83.3
Ca_29420_v3 Cicer arietinum L. HOM05D003834 ORTHO05D044391 6.9e-08 63.5 108 36.1


User provided reference genes

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