Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim11G0018200 Rhododendron simsii HOM05D003327 ORTHO05D024157 1.7e-57 226.1 139 100.0
vmacro12281 Vaccinium macrocarpon HOM05D003327 ORTHO05D004535 5.2e-19 98.2 211 46.0
Rhsim06G0147000 Rhododendron simsii HOM05D003327 ORTHO05D004535 2.3e-14 82.8 190 45.3
TPR.G8402 Trifolium pratense HOM05D003327 ORTHO05D004535 2.3e-14 82.8 141 42.6
CSS0024624 Camellia sinensis var. sinensis HOM05D003327 ORTHO05D004535 3.9e-14 82.0 210 41.0
Actinidia09866 Actinidia chinensis HOM05D003327 ORTHO05D004535 7.3e-13 77.8 198 42.9
Actinidia11048 Actinidia chinensis HOM05D003327 ORTHO05D004535 1.3e-12 77.0 206 40.8
AUR62038154 Chenopodium quinoa HOM05D003327 ORTHO05D004535 4.0e-11 72.0 49 75.5
Potri.013G135300 Populus trichocarpa HOM05D003327 ORTHO05D004535 5.3e-11 71.6 49 75.5
Sabra13G0114600 Salix brachista HOM05D003327 ORTHO05D004535 5.3e-11 71.6 49 75.5
TWI36G1653 Tripterygium wilfordii HOM05D003327 ORTHO05D004535 5.3e-11 71.6 49 75.5
Ca_26452_v3 Cicer arietinum L. HOM05D003327 ORTHO05D004535 1.2e-10 70.5 49 73.5
Lj3g0008565 Lotus japonicus HOM05D003327 ORTHO05D004535 1.2e-10 70.5 49 73.5
Cfa014585 Carpinus fangiana HOM05D003327 ORTHO05D004535 1.5e-10 70.1 49 73.5
Haze_13137 Corylus avellana HOM05D003327 ORTHO05D004535 1.5e-10 70.1 49 73.5
ATR0751G069 Amborella trichopoda HOM05D003327 ORTHO05D004535 2.0e-10 69.7 49 73.5
MBI19_g29442_MAGBIO Magnolia biondii HOM05D003327 ORTHO05D004535 2.0e-10 69.7 49 73.5
Pp3c24_11640 Physcomitrium patens HOM05D003327 ORTHO05D004535 2.0e-10 69.7 49 73.5
Pp3c8_17590 Physcomitrium patens HOM05D003327 ORTHO05D004535 2.0e-10 69.7 49 73.5
Aqoxy2G01527 Aquilegia oxysepala HOM05D003327 ORTHO05D004535 2.6e-10 69.3 49 73.5
HanXRQChr11g0343151 Helianthus annuus HOM05D003327 ORTHO05D004535 2.6e-10 69.3 49 71.4
HanXRQChr14g0433631 Helianthus annuus HOM05D003327 ORTHO05D004535 2.6e-10 69.3 49 71.4
Lsat_1_v5_gn_1_74900 Lactuca sativa HOM05D003327 ORTHO05D004535 2.6e-10 69.3 49 71.4
Mapoly0016s0118 Marchantia polymorpha HOM05D003327 ORTHO05D004535 2.6e-10 69.3 49 73.5
Atru.chr9.1814 Acer truncatum HOM05D003327 ORTHO05D004535 3.4e-10 68.9 49 71.4
Haze_05508 Corylus avellana HOM05D003327 ORTHO05D004535 3.4e-10 68.9 49 73.5
Haze_05514 Corylus avellana HOM05D003327 ORTHO05D004535 3.4e-10 68.9 49 73.5
HPP92_022219 Vanilla planifolia HOM05D003327 ORTHO05D004535 3.4e-10 68.9 49 73.5
CDE05G1413 Ceratophyllum demersum HOM05D003327 ORTHO05D004535 4.4e-10 68.6 49 71.4
CDE05G2562 Ceratophyllum demersum HOM05D003327 ORTHO05D004535 4.4e-10 68.6 49 71.4
Atru.chr6.3011 Acer truncatum HOM05D003327 ORTHO05D004535 5.8e-10 68.2 49 71.4
AagrBONN_evm.TU.Sc2ySwM_117.1992 Anthoceros agrestis HOM05D003327 ORTHO05D004535 5.8e-10 68.2 49 71.4
arahy.Tifrunner.gnm1.ann1.2625MI Arachis hypogaea HOM05D003327 ORTHO05D004535 5.8e-10 68.2 49 71.4
arahy.Tifrunner.gnm1.ann1.HZLZ57 Arachis hypogaea HOM05D003327 ORTHO05D004535 5.8e-10 68.2 49 71.4
CiPaw.06G027000 Carya illinoinensis HOM05D003327 ORTHO05D004535 5.8e-10 68.2 49 71.4
ClCG06G002520 Citrullus lanatus HOM05D003327 ORTHO05D004535 5.8e-10 68.2 49 71.4
MELO3C022275.2 Cucumis melo HOM05D003327 ORTHO05D004535 5.8e-10 68.2 49 71.4
CsaV3_6G008590 Cucumis sativus L. HOM05D003327 ORTHO05D004535 5.8e-10 68.2 49 71.4
Duzib132G0920 Durio zibethinus HOM05D003327 ORTHO05D004535 5.8e-10 68.2 49 71.4
Glyma.12G203300 Glycine max HOM05D003327 ORTHO05D004535 5.8e-10 68.2 49 71.4
Glyma.13G298300 Glycine max HOM05D003327 ORTHO05D004535 5.8e-10 68.2 49 71.4
Gohir.A03G157700 Gossypium hirsutum HOM05D003327 ORTHO05D004535 5.8e-10 68.2 49 71.4
Gohir.D02G180900 Gossypium hirsutum HOM05D003327 ORTHO05D004535 5.8e-10 68.2 49 71.4
Gorai.005G202800 Gossypium raimondii HOM05D003327 ORTHO05D004535 5.8e-10 68.2 49 71.4
Manes.13G148100 Manihot esculenta HOM05D003327 ORTHO05D004535 5.8e-10 68.2 49 71.4
Phvul.005G104900 Phaseolus vulgaris HOM05D003327 ORTHO05D004535 5.8e-10 68.2 49 71.4
QL08p038229 Quercus lobata HOM05D003327 ORTHO05D004535 5.8e-10 68.2 49 73.5
Sed0023241 Sechium edule HOM05D003327 ORTHO05D004535 5.8e-10 68.2 49 71.4
Thecc.02G177000 Theobroma cacao HOM05D003327 ORTHO05D004535 5.8e-10 68.2 49 71.4
VMungo1080G1483 Vigna mungo HOM05D003327 ORTHO05D004535 5.8e-10 68.2 49 71.4
EL10Ac7g16358 Beta vulgaris HOM05D003327 ORTHO05D004535 7.6e-10 67.8 46 76.1
Cc07_g08310 Coffea canephora HOM05D003327 ORTHO05D004535 7.6e-10 67.8 49 69.4
Lj8P113T26 Lonicera japonica HOM05D003327 ORTHO05D004535 7.6e-10 67.8 49 71.4
Medtr7g068630 Medicago truncatula HOM05D003327 ORTHO05D004535 7.6e-10 67.8 49 71.4
Peaxi162Scf00132g00526 Petunia axillaris HOM05D003327 ORTHO05D004535 7.6e-10 67.8 49 69.4
Solyc07g054200.4 Solanum lycopersicum HOM05D003327 ORTHO05D004535 7.6e-10 67.8 49 69.4
Sopen07g028130 Solanum pennellii HOM05D003327 ORTHO05D004535 7.6e-10 67.8 49 69.4
PGSC0003DMG400018313 Solanum tuberosum HOM05D003327 ORTHO05D004535 7.6e-10 67.8 49 69.4
MSTRG.14206 Avicennia marina HOM05D003327 ORTHO05D004535 1.3e-09 67.0 81 70.4
ECA248G1946 Erigeron canadensis HOM05D003327 ORTHO05D004535 1.3e-09 67.0 49 69.4
SMO112G0037 Selaginella moellendorffii HOM05D003327 ORTHO05D004535 1.3e-09 67.0 49 69.4
TAR629G1444 Trochodendron aralioides HOM05D003327 ORTHO05D004535 1.3e-09 67.0 49 69.4
unitig_62.g23173 Utricularia gibba HOM05D003327 ORTHO05D004535 1.3e-09 67.0 49 71.4
COL.COLO4_06982 Corchorus olitorius HOM05D003327 ORTHO05D004535 1.7e-09 66.6 49 69.4
COL.COLO4_09076 Corchorus olitorius HOM05D003327 ORTHO05D004535 1.7e-09 66.6 49 69.4
Psat3g129480 Pisum sativum HOM05D003327 ORTHO05D004535 1.7e-09 66.6 46 73.9
Dinv23663 Davidia involucrata HOM05D003327 ORTHO05D004535 2.2e-09 66.2 203 36.9
Aa31LG1G22990 Aethionema arabicum HOM05D003327 ORTHO05D004535 2.9e-09 65.9 49 65.3
BcaB01g01947 Brassica carinata HOM05D003327 ORTHO05D004535 2.9e-09 65.9 49 67.3
BcaC04g23971 Brassica carinata HOM05D003327 ORTHO05D004535 2.9e-09 65.9 49 67.3
A09p02770 Brassica napus HOM05D003327 ORTHO05D004535 2.9e-09 65.9 49 67.3
C09p02840 Brassica napus HOM05D003327 ORTHO05D004535 2.9e-09 65.9 49 67.3
BolC9t53210H Brassica oleracea HOM05D003327 ORTHO05D004535 2.9e-09 65.9 49 67.3
BraA09t35919Z Brassica rapa HOM05D003327 ORTHO05D004535 2.9e-09 65.9 49 67.3
Cpa.g.sc34.134 Carica papaya HOM05D003327 ORTHO05D004535 2.9e-09 65.9 49 67.3
AUR62009842 Chenopodium quinoa HOM05D003327 ORTHO05D004535 2.9e-09 65.9 46 73.9
Thhalv10028386m.g Eutrema salsugineum HOM05D003327 ORTHO05D004535 2.9e-09 65.9 49 67.3
PGR142G2878 Punica granatum HOM05D003327 ORTHO05D004535 2.9e-09 65.9 49 69.4
Sp6g03490 Schrenkiella parvula HOM05D003327 ORTHO05D004535 2.9e-09 65.9 49 67.3
Sc21g0000860 Simmondsia chinensis HOM05D003327 ORTHO05D004535 2.9e-09 65.9 49 69.4
THA.LOC104801181 Tarenaya hassleriana HOM05D003327 ORTHO05D004535 2.9e-09 65.9 49 67.3
Ah.08g216420 Amaranthus hybridus HOM05D003327 ORTHO05D004535 3.8e-09 65.5 46 73.9
Eucgr.K00962 Eucalyptus grandis HOM05D003327 ORTHO05D004535 3.8e-09 65.5 46 73.9
FvH4_2g13420 Fragaria vesca HOM05D003327 ORTHO05D004535 4.9e-09 65.1 49 67.3
FAN15G1216 Fragaria x ananassa HOM05D003327 ORTHO05D004535 4.9e-09 65.1 49 67.3
FAN24G1643 Fragaria x ananassa HOM05D003327 ORTHO05D004535 4.9e-09 65.1 49 67.3
FAN27G1055 Fragaria x ananassa HOM05D003327 ORTHO05D004535 4.9e-09 65.1 49 67.3
RcHm_v2.0_Chr5g0050851 Rosa chinensis HOM05D003327 ORTHO05D004535 4.9e-09 65.1 49 67.3
SMO364G0651 Selaginella moellendorffii HOM05D003327 ORTHO05D004535 4.9e-09 65.1 49 67.3
AL6G49440 Arabidopsis lyrata HOM05D003327 ORTHO05D004535 6.4e-09 64.7 49 67.3
AT4G03430 Arabidopsis thaliana HOM05D003327 ORTHO05D004535 6.4e-09 64.7 49 67.3
Prupe.3G157000 Prunus persica HOM05D003327 ORTHO05D004535 6.4e-09 64.7 49 67.3
MD09G1251900 Malus domestica HOM05D003327 ORTHO05D004535 1.1e-08 63.9 49 65.3
MD17G1244100 Malus domestica HOM05D003327 ORTHO05D004535 1.1e-08 63.9 49 65.3
AUR62004130 Chenopodium quinoa HOM05D003327 ORTHO05D004535 1.4e-08 63.5 46 71.7
CBR_g16993 Chara braunii HOM05D003327 ORTHO05D004535 1.9e-08 63.2 49 65.3
Ciclev10018370m.g Citrus clementina HOM05D003327 ORTHO05D004535 1.9e-08 63.2 49 67.3
Os10g0498600 Oryza sativa ssp. japonica HOM05D003327 ORTHO05D004535 1.9e-08 63.2 49 65.3
RcHm_v2.0_Chr7g0226921 Rosa chinensis HOM05D003327 ORTHO05D004535 1.9e-08 63.2 181 31.5
Zm00001eb137760 Zea mays HOM05D003327 ORTHO05D004535 1.9e-08 63.2 49 65.3
Zm00001eb410870 Zea mays HOM05D003327 ORTHO05D004535 1.9e-08 63.2 49 65.3
Carub.0008s0242 Capsella rubella HOM05D003327 ORTHO05D004535 2.4e-08 62.8 49 63.3
DCAR_021237 Daucus carota HOM05D003327 ORTHO05D004535 3.2e-08 62.4 46 69.6
Carub.0006s3363 Capsella rubella HOM05D003327 ORTHO05D004535 4.2e-08 62.0 49 61.2
PGR083G0416 Punica granatum HOM05D003327 ORTHO05D024157 4.2e-08 62.0 56 58.9
CARHR251830 Cardamine hirsuta HOM05D003327 ORTHO05D004535 5.4e-08 61.6 49 61.2
TPR.G38990 Trifolium pratense HOM05D003327 ORTHO05D004535 9.3e-08 60.8 58 62.1
Os01g0263600 Oryza sativa ssp. japonica HOM05D003327 ORTHO05D004535 2.1e-07 59.7 51 60.8
Prupe.8G033800 Prunus persica HOM05D003327 ORTHO05D004535 2.1e-07 59.7 191 30.4
Nitab4.5_0000512g0190 Nicotiana tabacum HOM05D003327 ORTHO05D004535 4.6e-07 58.5 44 65.9
Nitab4.5_0002526g0040 Nicotiana tabacum HOM05D003327 ORTHO05D004535 4.6e-07 58.5 44 65.9
Nitab4.5_0003263g0030 Nicotiana tabacum HOM05D003327 ORTHO05D004535 4.6e-07 58.5 44 65.9
SGA_v2.0_scaffold8G04345 Striga asiatica HOM05D003327 ORTHO05D004535 3.0e-06 55.8 49 61.2
unitig_52.g17348 Utricularia gibba HOM05D003327 ORTHO05D018410 8.7e-06 54.3 44 65.9


User provided reference genes

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