Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0076600 Rhododendron simsii HOM05D003738 ORTHO05D005143 2.7e-146 521.9 260 100.0
Rhsim10G0076800 Rhododendron simsii HOM05D003738 ORTHO05D005143 2.2e-103 379.4 252 79.8
vmacro05488 Vaccinium macrocarpon HOM05D003738 ORTHO05D005143 1.5e-99 366.7 252 76.6
Actinidia36345 Actinidia chinensis HOM05D003738 ORTHO05D005143 1.5e-96 356.7 252 74.6
Peaxi162Scf00129g00317 Petunia axillaris HOM05D003738 ORTHO05D005143 1.9e-94 349.7 252 72.6
Peaxi162Scf00458g00011 Petunia axillaris HOM05D003738 ORTHO05D005143 1.9e-94 349.7 252 72.6
Nitab4.5_0007290g0010 Nicotiana tabacum HOM05D003738 ORTHO05D005143 2.4e-94 349.4 252 72.2
Sopen02g035750 Solanum pennellii HOM05D003738 ORTHO05D005143 2.4e-94 349.4 252 72.6
Atru.chr1.1579 Acer truncatum HOM05D003738 ORTHO05D005143 4.2e-94 348.6 251 73.7
Solyc02g091100.3 Solanum lycopersicum HOM05D003738 ORTHO05D005143 4.2e-94 348.6 252 72.6
Nitab4.5_0011323g0010 Nicotiana tabacum HOM05D003738 ORTHO05D005143 1.2e-93 347.1 252 71.8
CAN.G625.63 Capsicum annuum HOM05D003738 ORTHO05D005143 1.6e-93 346.7 252 71.8
Nitab4.5_0002456g0020 Nicotiana tabacum HOM05D003738 ORTHO05D005143 1.6e-93 346.7 252 71.4
Lj2A438T57 Lonicera japonica HOM05D003738 ORTHO05D005143 2.7e-93 345.9 252 71.8
PGSC0003DMG400030633 Solanum tuberosum HOM05D003738 ORTHO05D005143 6.0e-93 344.7 252 71.8
Manes.01G113700 Manihot esculenta HOM05D003738 ORTHO05D005143 1.8e-92 343.2 252 71.8
MELO3C010381.2 Cucumis melo HOM05D003738 ORTHO05D005143 3.0e-92 342.4 252 71.8
Eucgr.F02797 Eucalyptus grandis HOM05D003738 ORTHO05D005143 5.1e-92 341.7 251 70.5
CsaV3_4G010390 Cucumis sativus L. HOM05D003738 ORTHO05D005143 6.7e-92 341.3 252 71.0
Gorai.007G185300 Gossypium raimondii HOM05D003738 ORTHO05D005143 8.7e-92 340.9 259 70.3
CANSAT78G1141 Cannabis sativa HOM05D003738 ORTHO05D005143 1.5e-91 340.1 252 71.0
Nn4g24034 Nelumbo nucifera HOM05D003738 ORTHO05D005143 1.5e-91 340.1 252 71.8
DCAR_025892 Daucus carota HOM05D003738 ORTHO05D005143 3.3e-91 339.0 252 69.8
Phvul.008G243200 Phaseolus vulgaris HOM05D003738 ORTHO05D005143 3.3e-91 339.0 252 70.6
HanXRQChr07g0193781 Helianthus annuus HOM05D003738 ORTHO05D005143 9.6e-91 337.4 252 69.4
Cc07_g08440 Coffea canephora HOM05D003738 ORTHO05D005143 1.3e-90 337.0 252 71.0
RcHm_v2.0_Chr3g0494041 Rosa chinensis HOM05D003738 ORTHO05D005143 1.6e-90 336.7 252 69.8
TWI77G0590 Tripterygium wilfordii HOM05D003738 ORTHO05D005143 2.1e-90 336.3 251 69.7
Potri.004G094600 Populus trichocarpa HOM05D003738 ORTHO05D005143 2.8e-90 335.9 252 69.4
ClCG07G016430 Citrullus lanatus HOM05D003738 ORTHO05D005143 3.7e-90 335.5 252 69.8
Gohir.D11G173000 Gossypium hirsutum HOM05D003738 ORTHO05D005143 3.7e-90 335.5 252 70.2
Oeu061823.1 Olea europaea HOM05D003738 ORTHO05D005143 3.7e-90 335.5 251 70.9
Aqoxy3G00165 Aquilegia oxysepala HOM05D003738 ORTHO05D005143 4.8e-90 335.1 259 69.1
Migut.L00189 Erythranthe guttata HOM05D003738 ORTHO05D005143 4.8e-90 335.1 252 69.4
HPP92_003826 Vanilla planifolia HOM05D003738 ORTHO05D005143 4.8e-90 335.1 252 70.2
PSO017G1959 Papaver somniferum HOM05D003738 ORTHO05D005143 6.2e-90 334.7 251 68.5
Ciclev10011371m.g Citrus clementina HOM05D003738 ORTHO05D005143 8.1e-90 334.3 251 70.1
Sed0022193 Sechium edule HOM05D003738 ORTHO05D005143 8.1e-90 334.3 252 70.2
arahy.Tifrunner.gnm1.ann1.KYQ4XK Arachis hypogaea HOM05D003738 ORTHO05D005143 1.1e-89 334.0 251 70.1
arahy.Tifrunner.gnm1.ann1.UI9B1P Arachis hypogaea HOM05D003738 ORTHO05D005143 1.1e-89 334.0 251 70.1
Cpa.g.sc170.16 Carica papaya HOM05D003738 ORTHO05D005143 1.1e-89 334.0 252 69.4
FvH4_1g28990 Fragaria vesca HOM05D003738 ORTHO05D005143 1.1e-89 334.0 252 69.0
MD00G1054500 Malus domestica HOM05D003738 ORTHO05D005143 1.1e-89 334.0 252 71.0
PSO455G0115 Papaver somniferum HOM05D003738 ORTHO05D005143 1.1e-89 334.0 251 68.5
TWI74G0253 Tripterygium wilfordii HOM05D003738 ORTHO05D005143 1.4e-89 333.6 251 70.1
VMungo0647G1516 Vigna mungo HOM05D003738 ORTHO05D005143 1.4e-89 333.6 252 69.8
Ah.16g101450 Amaranthus hybridus HOM05D003738 ORTHO05D005143 1.8e-89 333.2 251 68.5
FAN19G0768 Fragaria x ananassa HOM05D003738 ORTHO05D005143 2.4e-89 332.8 252 68.7
Prupe.3G150000 Prunus persica HOM05D003738 ORTHO05D005143 2.4e-89 332.8 252 70.6
Glyma.14G207700 Glycine max HOM05D003738 ORTHO05D005143 3.1e-89 332.4 252 68.7
ECA238G0020 Erigeron canadensis HOM05D003738 ORTHO05D005143 4.0e-89 332.0 252 68.7
FAN26G1505 Fragaria x ananassa HOM05D003738 ORTHO05D005143 4.0e-89 332.0 252 68.7
COL.COLO4_12270 Corchorus olitorius HOM05D003738 ORTHO05D005143 5.3e-89 331.6 253 68.4
Lalb_Chr02g0160571 Lupinus albus HOM05D003738 ORTHO05D005143 5.3e-89 331.6 252 69.0
THA.LOC104820853 Tarenaya hassleriana HOM05D003738 ORTHO05D005143 5.3e-89 331.6 252 68.7
MD09G1258100 Malus domestica HOM05D003738 ORTHO05D005143 6.9e-89 331.3 252 70.6
PSO170G1643 Papaver somniferum HOM05D003738 ORTHO05D005143 6.9e-89 331.3 251 67.7
Sabra04G0063900 Salix brachista HOM05D003738 ORTHO05D005143 6.9e-89 331.3 252 68.3
Glyma.02G238800 Glycine max HOM05D003738 ORTHO05D005143 1.2e-88 330.5 252 68.7
Ciclev10011616m.g Citrus clementina HOM05D003738 ORTHO05D005143 1.5e-88 330.1 255 68.6
COL.COLO4_27155 Corchorus olitorius HOM05D003738 ORTHO05D005143 2.6e-88 329.3 259 66.8
Sc10g0001020 Simmondsia chinensis HOM05D003738 ORTHO05D005143 3.4e-88 328.9 252 69.4
Thecc.04G126300 Theobroma cacao HOM05D003738 ORTHO05D005143 3.4e-88 328.9 255 67.1
Lj2g0012793 Lotus japonicus HOM05D003738 ORTHO05D005143 4.5e-88 328.6 252 67.1
EL10Ac2g04518 Beta vulgaris HOM05D003738 ORTHO05D005143 7.6e-88 327.8 253 67.6
FAN23G1334 Fragaria x ananassa HOM05D003738 ORTHO05D005143 9.9e-88 327.4 252 67.9
Lsat_1_v5_gn_2_80860 Lactuca sativa HOM05D003738 ORTHO05D005143 9.9e-88 327.4 252 66.7
Hund13699 Selenicereus undatus HOM05D003738 ORTHO05D005143 9.9e-88 327.4 251 68.1
Lalb_Chr06g0176761 Lupinus albus HOM05D003738 ORTHO05D005143 1.3e-87 327.0 251 68.9
MSTRG.15310 Avicennia marina HOM05D003738 ORTHO05D005143 1.7e-87 326.6 252 69.0
SGA_v2.0_scaffold329G48870 Striga asiatica HOM05D003738 ORTHO05D005143 1.7e-87 326.6 252 67.1
Duzib133G1513 Durio zibethinus HOM05D003738 ORTHO05D005143 2.2e-87 326.2 259 66.0
AUR62023216 Chenopodium quinoa HOM05D003738 ORTHO05D005143 2.9e-87 325.9 251 67.3
Cfa007882 Carpinus fangiana HOM05D003738 ORTHO05D005143 3.8e-87 325.5 251 67.7
Haze_14195 Corylus avellana HOM05D003738 ORTHO05D005143 3.8e-87 325.5 259 65.6
BcaC04g18797 Brassica carinata HOM05D003738 ORTHO05D005143 6.4e-87 324.7 252 68.3
A10p22030 Brassica napus HOM05D003738 ORTHO05D005143 6.4e-87 324.7 252 68.3
C09p59780 Brassica napus HOM05D003738 ORTHO05D005143 6.4e-87 324.7 252 68.3
BolC9t58818H Brassica oleracea HOM05D003738 ORTHO05D005143 6.4e-87 324.7 252 68.3
BraA10t44260Z Brassica rapa HOM05D003738 ORTHO05D005143 6.4e-87 324.7 252 68.3
Duzib138G1092 Durio zibethinus HOM05D003738 ORTHO05D005143 6.4e-87 324.7 252 67.9
MBI16_g21165_MAGBIO Magnolia biondii HOM05D003738 ORTHO05D005143 1.9e-86 323.2 252 67.9
Rhsim05G0052500 Rhododendron simsii HOM05D003738 ORTHO05D005143 1.9e-86 323.2 232 75.9
BcaB08g36776 Brassica carinata HOM05D003738 ORTHO05D005143 2.4e-86 322.8 252 67.9
AUR62023263 Chenopodium quinoa HOM05D003738 ORTHO05D005143 2.4e-86 322.8 251 66.5
Sp6g26840 Schrenkiella parvula HOM05D003738 ORTHO05D005143 2.4e-86 322.8 252 67.5
Ca_04135_v3 Cicer arietinum L. HOM05D003738 ORTHO05D005143 3.2e-86 322.4 253 68.0
CiPaw.03G065800 Carya illinoinensis HOM05D003738 ORTHO05D005143 4.2e-86 322.0 251 66.5
AL6G28450 Arabidopsis lyrata HOM05D003738 ORTHO05D005143 7.1e-86 321.2 252 67.5
Carub.0006s1559 Capsella rubella HOM05D003738 ORTHO05D005143 9.3e-86 320.9 252 66.7
Thhalv10013104m.g Eutrema salsugineum HOM05D003738 ORTHO05D005143 1.2e-85 320.5 252 67.1
Gohir.A11G166650 Gossypium hirsutum HOM05D003738 ORTHO05D005143 1.2e-85 320.5 249 69.1
CARHR195830 Cardamine hirsuta HOM05D003738 ORTHO05D005143 1.6e-85 320.1 252 66.7
Zm00001eb336870 Zea mays HOM05D003738 ORTHO05D005143 1.6e-85 320.1 252 65.5
Aa31LG11G12270 Aethionema arabicum HOM05D003738 ORTHO05D005143 3.5e-85 318.9 252 67.1
AT5G17380 Arabidopsis thaliana HOM05D003738 ORTHO05D005143 6.0e-85 318.2 252 66.7
Medtr6g004200 Medicago truncatula HOM05D003738 ORTHO05D005143 1.8e-84 316.6 253 67.2
Os01g0505400 Oryza sativa ssp. japonica HOM05D003738 ORTHO05D005143 1.8e-84 316.6 252 64.7
Psat1g052800 Pisum sativum HOM05D003738 ORTHO05D005143 2.3e-84 316.2 253 66.8
QL02p049823 Quercus lobata HOM05D003738 ORTHO05D005143 2.3e-84 316.2 255 66.7
TPR.G25203 Trifolium pratense HOM05D003738 ORTHO05D005143 2.3e-84 316.2 260 65.8
CDE06G1483 Ceratophyllum demersum HOM05D003738 ORTHO05D005143 3.9e-84 315.5 252 65.1
CSS0050020 Camellia sinensis var. sinensis HOM05D003738 ORTHO05D005143 6.7e-84 314.7 252 68.3
SHI25638 Sapria himalayana HOM05D003738 ORTHO05D005143 2.5e-83 312.8 252 65.5
SEGI_09825 Sequoiadendron giganteum HOM05D003738 ORTHO05D005143 2.0e-80 303.1 258 62.8
Pp3c3_25360 Physcomitrium patens HOM05D003738 ORTHO05D005143 5.5e-78 295.0 258 60.5
AagrBONN_evm.TU.Sc2ySwM_369.580 Anthoceros agrestis HOM05D003738 ORTHO05D005143 1.8e-76 290.0 259 59.8
ATR0057G018 Amborella trichopoda HOM05D003738 ORTHO05D005143 2.1e-74 283.1 252 57.9
TAR374G1203 Trochodendron aralioides HOM05D003738 ORTHO05D005143 6.9e-73 278.1 217 69.1
Rhsim10G0075800 Rhododendron simsii HOM05D003738 ORTHO05D005143 1.2e-72 277.3 180 80.0
Mapoly0099s0049 Marchantia polymorpha HOM05D003738 ORTHO05D005143 5.9e-72 275.0 259 54.8
SalBow4G0814 Salvia bowleyana HOM05D003738 ORTHO05D005143 4.2e-70 268.9 216 64.8
SMO196G0015 Selaginella moellendorffii HOM05D003738 ORTHO05D005143 3.3e-67 259.2 252 53.2
TAR629G2166 Trochodendron aralioides HOM05D003738 ORTHO05D005143 2.6e-64 249.6 232 58.2
Zm00001eb155100 Zea mays HOM05D003738 ORTHO05D005143 1.3e-58 230.7 215 56.7
CBR_g39223 Chara braunii HOM05D003738 ORTHO05D005143 7.7e-56 221.5 253 47.0
Rhsim10G0074200 Rhododendron simsii HOM05D003738 ORTHO05D005143 7.2e-54 214.9 151 74.8
Rhsim10G0074000 Rhododendron simsii HOM05D003738 ORTHO05D005143 7.9e-53 211.5 141 79.4
Rhsim10G0074800 Rhododendron simsii HOM05D003738 ORTHO05D005143 7.4e-51 204.9 145 73.8
CDE07G0683 Ceratophyllum demersum HOM05D003738 ORTHO05D005143 9.7e-43 177.9 141 62.4
MD16G1277100 Malus domestica HOM05D003738 ORTHO05D005234 1.4e-41 174.1 203 50.7
CAN.G1019.3 Capsicum annuum HOM05D003738 ORTHO05D005143 2.4e-41 173.3 174 55.7
Dinv14852 Davidia involucrata HOM05D003738 ORTHO05D005143 1.7e-34 150.6 82 90.2
Rhsim10G0075200 Rhododendron simsii HOM05D003738 ORTHO05D005143 9.1e-33 144.8 91 82.4
arahy.Tifrunner.gnm1.ann1.95JV46 Arachis hypogaea HOM05D003738 ORTHO05D005143 3.0e-28 129.8 156 50.6
PRCOL_00004783 Prasinoderma coloniale HOM05D003738 ORTHO05D005143 3.1e-25 119.8 301 30.2
arahy.Tifrunner.gnm1.ann1.RD77R5 Arachis hypogaea HOM05D003738 ORTHO05D021496 7.8e-24 115.2 99 63.6
arahy.Tifrunner.gnm1.ann1.P0BYU6 Arachis hypogaea HOM05D003738 ORTHO05D005143 3.8e-23 112.8 131 52.7
arahy.Tifrunner.gnm1.ann1.SAWF7B Arachis hypogaea HOM05D003738 ORTHO05D021496 6.6e-23 112.1 96 63.5
Lsat_1_v5_gn_5_125600 Lactuca sativa HOM05D003738 ORTHO05D021496 2.1e-21 107.1 65 80.0
Lsat_1_v5_gn_3_101660 Lactuca sativa HOM05D003738 ORTHO05D021496 2.8e-21 106.7 66 78.8
Zm00001eb381790 Zea mays HOM05D003738 ORTHO05D021496 6.8e-20 102.1 58 82.8
HanXRQChr09g0267561 Helianthus annuus HOM05D003738 ORTHO05D005143 6.4e-18 95.5 101 50.5
Lsat_1_v5_gn_1_20020 Lactuca sativa HOM05D003738 ORTHO05D005143 7.0e-17 92.0 46 93.5
HanXRQChr02g0040721 Helianthus annuus HOM05D003738 ORTHO05D005143 7.8e-16 88.6 135 38.5
arahy.Tifrunner.gnm1.ann1.8AFI1C Arachis hypogaea HOM05D003738 ORTHO05D005143 1.7e-15 87.4 143 38.5
arahy.Tifrunner.gnm1.ann1.2D9IFX Arachis hypogaea HOM05D003738 ORTHO05D000844 1.1e-14 84.7 55 69.1
arahy.Tifrunner.gnm1.ann1.86RIW1 Arachis hypogaea HOM05D003738 ORTHO05D005143 3.3e-14 83.2 80 61.2
arahy.Tifrunner.gnm1.ann1.PVN2ZV Arachis hypogaea HOM05D003738 ORTHO05D021496 3.6e-13 79.7 51 74.5
RhsimUnG0202300 Rhododendron simsii HOM05D003738 ORTHO05D005143 5.2e-12 75.9 54 68.5
arahy.Tifrunner.gnm1.ann1.S5LGPQ Arachis hypogaea HOM05D003738 ORTHO05D005143 8.9e-12 75.1 69 60.9
Rhsim10G0075300 Rhododendron simsii HOM05D003738 ORTHO05D050681 5.8e-11 72.4 42 81.0
Rhsim10G0075700 Rhododendron simsii HOM05D003738 ORTHO05D050681 5.8e-11 72.4 42 81.0
PRCOL_00003526 Prasinoderma coloniale HOM05D002723 ORTHO05D003240 2.4e-09 67.0 250 25.2
arahy.Tifrunner.gnm1.ann1.J2B3IW Arachis hypogaea HOM05D003738 ORTHO05D005143 3.2e-09 66.6 69 50.7
arahy.Tifrunner.gnm1.ann1.XG2Q3Z Arachis hypogaea HOM05D003738 ORTHO05D005143 3.2e-09 66.6 71 56.3
AagrBONN_evm.TU.Sc2ySwM_228.1545 Anthoceros agrestis HOM05D002723 ORTHO05D026670 1.2e-08 64.7 250 24.0
arahy.Tifrunner.gnm1.ann1.KBQ0HF Arachis hypogaea HOM05D003738 ORTHO05D000844 1.2e-08 64.7 36 83.3
HanXRQChr02g0034691 Helianthus annuus HOM05D002723 ORTHO05D003240 7.8e-08 62.0 250 26.0
VMungo1309G1476 Vigna mungo HOM05D002723 ORTHO05D003240 1.0e-07 61.6 256 27.0
Sed0017429 Sechium edule HOM05D002723 ORTHO05D003240 1.3e-07 61.2 259 22.8
AagrBONN_evm.TU.Sc2ySwM_344.1740 Anthoceros agrestis HOM05D002723 ORTHO05D003240 3.9e-07 59.7 258 23.3
Pp3c26_13760 Physcomitrium patens HOM05D002723 ORTHO05D026670 3.9e-07 59.7 257 23.7
Mapoly0002s0181 Marchantia polymorpha HOM05D000198 ORTHO05D026670 5.0e-07 59.3 254 24.4
arahy.Tifrunner.gnm1.ann1.AT2XXE Arachis hypogaea HOM05D003738 ORTHO05D005143 8.6e-07 58.5 122 36.9
PGR083G1230 Punica granatum HOM05D002723 ORTHO05D003240 1.1e-06 58.2 250 25.2
arahy.Tifrunner.gnm1.ann1.LBEM0G Arachis hypogaea HOM05D003738 ORTHO05D000844 1.5e-06 57.8 55 50.9
HPP92_000885 Vanilla planifolia HOM05D002723 ORTHO05D003240 1.9e-06 57.4 259 25.1
Sabra15G0117900 Salix brachista HOM05D002723 ORTHO05D003240 3.3e-06 56.6 257 24.9
ClCG06G017910 Citrullus lanatus HOM05D002723 ORTHO05D003240 4.3e-06 56.2 259 22.4
Sed0003955 Sechium edule HOM05D002723 ORTHO05D003240 5.6e-06 55.8 259 21.6
CBR_g8112 Chara braunii HOM05D002723 ORTHO05D003240 9.5e-06 55.1 268 24.3
Eucgr.B00108 Eucalyptus grandis HOM05D002723 ORTHO05D003240 9.5e-06 55.1 250 25.2


User provided reference genes

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