Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0076500 Rhododendron simsii HOM05D003738 ORTHO05D011435 3.2e-95 351.7 168 100.0
Rhsim06G0111000 Rhododendron simsii HOM05D000107 ORTHO05D011435 4.7e-46 188.3 94 91.5
Rhsim05G0112400 Rhododendron simsii HOM05D011579 ORTHO05D011435 6.1e-46 188.0 94 89.4
Rhsim03G0082400 Rhododendron simsii HOM05D000874 ORTHO05D001049 2.3e-45 186.0 94 89.4
Rhsim01G0119600 Rhododendron simsii HOM05D011579 ORTHO05D011435 2.2e-43 179.5 95 86.3
Rhsim02G0150600 Rhododendron simsii HOM05D011579 ORTHO05D011435 8.5e-24 114.4 119 52.9
RhsimUnG0182900 Rhododendron simsii HOM05D003738 ORTHO05D005143 6.3e-19 98.2 101 56.4
Rhsim05G0087700 Rhododendron simsii HOM05D011579 ORTHO05D011435 1.1e-18 97.4 96 50.0
RhsimUnG0164400 Rhododendron simsii HOM05D011579 ORTHO05D011435 1.1e-18 97.4 96 50.0
Rhsim09G0063300 Rhododendron simsii HOM05D000030 ORTHO05D000031 3.1e-18 95.9 96 47.9
Rhsim07G0148300 Rhododendron simsii HOM05D011579 ORTHO05D011435 1.2e-17 94.0 96 46.9
Rhsim08G0127400 Rhododendron simsii HOM05D011579 ORTHO05D011435 7.7e-17 91.3 97 46.4
Rhsim09G0063800 Rhododendron simsii HOM05D011579 ORTHO05D011435 2.3e-16 89.7 97 45.4
Rhsim10G0076800 Rhododendron simsii HOM05D003738 ORTHO05D005143 3.8e-16 89.0 110 50.0
MD00G1054500 Malus domestica HOM05D003738 ORTHO05D005143 8.6e-16 87.8 107 50.5
Rhsim01G0135900 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.1e-15 87.4 95 45.3
vmacro05488 Vaccinium macrocarpon HOM05D003738 ORTHO05D005143 1.5e-15 87.0 107 50.5
Atru.chr1.1579 Acer truncatum HOM05D003738 ORTHO05D005143 1.9e-15 86.7 107 49.5
MD09G1258100 Malus domestica HOM05D003738 ORTHO05D005143 2.5e-15 86.3 107 49.5
Rhsim05G0108800 Rhododendron simsii HOM05D000808 ORTHO05D000863 2.5e-15 86.3 83 49.4
TWI74G0253 Tripterygium wilfordii HOM05D003738 ORTHO05D005143 3.3e-15 85.9 107 49.5
Manes.01G113700 Manihot esculenta HOM05D003738 ORTHO05D005143 4.3e-15 85.5 107 49.5
Lj2A438T57 Lonicera japonica HOM05D003738 ORTHO05D005143 5.6e-15 85.1 107 48.6
RcHm_v2.0_Chr3g0494041 Rosa chinensis HOM05D003738 ORTHO05D005143 5.6e-15 85.1 107 48.6
Zm00001eb336870 Zea mays HOM05D003738 ORTHO05D005143 5.6e-15 85.1 107 48.6
arahy.Tifrunner.gnm1.ann1.KYQ4XK Arachis hypogaea HOM05D003738 ORTHO05D005143 7.3e-15 84.7 107 48.6
Ca_04135_v3 Cicer arietinum L. HOM05D003738 ORTHO05D005143 7.3e-15 84.7 107 48.6
Ciclev10013371m.g Citrus clementina HOM05D003738 ORTHO05D005143 7.3e-15 84.7 105 48.6
Prupe.3G150000 Prunus persica HOM05D003738 ORTHO05D005143 7.3e-15 84.7 107 48.6
QL02p049823 Quercus lobata HOM05D003738 ORTHO05D005143 7.3e-15 84.7 106 48.1
Cfa007882 Carpinus fangiana HOM05D003738 ORTHO05D005143 9.5e-15 84.3 107 48.6
FAN23G1334 Fragaria x ananassa HOM05D003738 ORTHO05D005143 9.5e-15 84.3 108 48.1
Lj2g0012793 Lotus japonicus HOM05D003738 ORTHO05D005143 9.5e-15 84.3 107 47.7
Medtr6g004200 Medicago truncatula HOM05D003738 ORTHO05D005143 9.5e-15 84.3 107 47.7
Sabra04G0063900 Salix brachista HOM05D003738 ORTHO05D005143 9.5e-15 84.3 107 47.7
SalBow4G0814 Salvia bowleyana HOM05D003738 ORTHO05D005143 9.5e-15 84.3 105 48.6
TPR.G25203 Trifolium pratense HOM05D003738 ORTHO05D005143 9.5e-15 84.3 107 47.7
Actinidia36345 Actinidia chinensis HOM05D003738 ORTHO05D005143 1.2e-14 84.0 107 48.6
CiPaw.03G065800 Carya illinoinensis HOM05D003738 ORTHO05D005143 1.2e-14 84.0 107 48.6
Haze_14195 Corylus avellana HOM05D003738 ORTHO05D005143 1.2e-14 84.0 115 47.8
ECA238G0020 Erigeron canadensis HOM05D003738 ORTHO05D005143 1.2e-14 84.0 107 47.7
FvH4_1g28990 Fragaria vesca HOM05D003738 ORTHO05D005143 1.2e-14 84.0 108 48.1
FAN19G0768 Fragaria x ananassa HOM05D003738 ORTHO05D005143 1.2e-14 84.0 108 48.1
HanXRQChr07g0193781 Helianthus annuus HOM05D003738 ORTHO05D005143 1.2e-14 84.0 107 47.7
Peaxi162Scf00129g00317 Petunia axillaris HOM05D003738 ORTHO05D005143 1.2e-14 84.0 107 47.7
Sp6g26840 Schrenkiella parvula HOM05D003738 ORTHO05D005143 1.2e-14 84.0 107 48.6
Solyc02g091100.3 Solanum lycopersicum HOM05D003738 ORTHO05D005143 1.2e-14 84.0 107 47.7
Sopen02g035750 Solanum pennellii HOM05D003738 ORTHO05D005143 1.2e-14 84.0 107 47.7
PGSC0003DMG400030633 Solanum tuberosum HOM05D003738 ORTHO05D005143 1.2e-14 84.0 107 47.7
HPP92_003826 Vanilla planifolia HOM05D003738 ORTHO05D005143 1.2e-14 84.0 107 46.7
A10p22030 Brassica napus HOM05D003738 ORTHO05D005143 1.6e-14 83.6 107 47.7
C09p59780 Brassica napus HOM05D003738 ORTHO05D005143 1.6e-14 83.6 107 47.7
BraA10t44260Z Brassica rapa HOM05D003738 ORTHO05D005143 1.6e-14 83.6 107 47.7
CSS0050020 Camellia sinensis var. sinensis HOM05D003738 ORTHO05D005143 1.6e-14 83.6 107 47.7
CARHR195830 Cardamine hirsuta HOM05D003738 ORTHO05D005143 1.6e-14 83.6 107 47.7
Cc07_g08440 Coffea canephora HOM05D003738 ORTHO05D005143 1.6e-14 83.6 107 46.7
Nitab4.5_0007290g0010 Nicotiana tabacum HOM05D003738 ORTHO05D005143 1.6e-14 83.6 107 47.7
Nitab4.5_0011323g0010 Nicotiana tabacum HOM05D003738 ORTHO05D005143 1.6e-14 83.6 107 47.7
Potri.004G094600 Populus trichocarpa HOM05D003738 ORTHO05D005143 1.6e-14 83.6 107 47.7
Sed0022193 Sechium edule HOM05D003738 ORTHO05D005143 1.6e-14 83.6 107 47.7
CANSAT78G1141 Cannabis sativa HOM05D003738 ORTHO05D005143 2.1e-14 83.2 107 47.7
Ciclev10011371m.g Citrus clementina HOM05D003738 ORTHO05D005143 2.1e-14 83.2 107 46.7
CsaV3_4G010390 Cucumis sativus L. HOM05D003738 ORTHO05D005143 2.1e-14 83.2 107 46.7
Gorai.007G185300 Gossypium raimondii HOM05D003738 ORTHO05D005143 2.1e-14 83.2 107 46.7
Nitab4.5_0002456g0020 Nicotiana tabacum HOM05D003738 ORTHO05D005143 2.1e-14 83.2 107 47.7
ATR0057G018 Amborella trichopoda HOM05D003738 ORTHO05D005143 2.8e-14 82.8 105 46.7
CAN.G625.63 Capsicum annuum HOM05D003738 ORTHO05D005143 2.8e-14 82.8 107 47.7
Dinv34815 Davidia involucrata HOM05D003738 ORTHO05D005143 2.8e-14 82.8 107 46.7
Duzib133G1513 Durio zibethinus HOM05D003738 ORTHO05D005143 2.8e-14 82.8 107 46.7
Migut.L00189 Erythranthe guttata HOM05D003738 ORTHO05D005143 2.8e-14 82.8 107 46.7
Peaxi162Scf00458g00011 Petunia axillaris HOM05D003738 ORTHO05D005143 2.8e-14 82.8 107 46.7
SGA_v2.0_scaffold329G48870 Striga asiatica HOM05D003738 ORTHO05D005143 2.8e-14 82.8 107 47.7
GSVIVG01030948001 Vitis vinifera HOM05D003738 ORTHO05D005143 2.8e-14 82.8 107 46.7
Aa31LG11G12270 Aethionema arabicum HOM05D003738 ORTHO05D005143 3.6e-14 82.4 107 46.7
MSTRG.15310 Avicennia marina HOM05D003738 ORTHO05D005143 3.6e-14 82.4 107 47.7
BcaC04g18797 Brassica carinata HOM05D003738 ORTHO05D005143 3.6e-14 82.4 107 46.7
BolC9t58818H Brassica oleracea HOM05D003738 ORTHO05D005143 3.6e-14 82.4 107 46.7
COL.COLO4_12270 Corchorus olitorius HOM05D003738 ORTHO05D005143 3.6e-14 82.4 106 47.2
MELO3C010381.2 Cucumis melo HOM05D003738 ORTHO05D005143 3.6e-14 82.4 107 46.7
FAN26G1505 Fragaria x ananassa HOM05D003738 ORTHO05D005143 3.6e-14 82.4 108 47.2
Glyma.02G238800 Glycine max HOM05D003738 ORTHO05D005143 3.6e-14 82.4 107 45.8
Glyma.14G207700 Glycine max HOM05D003738 ORTHO05D005143 3.6e-14 82.4 107 45.8
Gohir.D11G173000 Gossypium hirsutum HOM05D003738 ORTHO05D005143 3.6e-14 82.4 107 46.7
Lalb_Chr02g0160571 Lupinus albus HOM05D003738 ORTHO05D005143 3.6e-14 82.4 107 47.7
TAR374G1203 Trochodendron aralioides HOM05D003738 ORTHO05D005143 3.6e-14 82.4 107 46.7
ClCG07G016430 Citrullus lanatus HOM05D003738 ORTHO05D005143 4.7e-14 82.0 107 45.8
Eucgr.F02797 Eucalyptus grandis HOM05D003738 ORTHO05D005143 4.7e-14 82.0 107 46.7
Lalb_Chr06g0176761 Lupinus albus HOM05D003738 ORTHO05D005143 4.7e-14 82.0 107 47.7
Nn4g24034 Nelumbo nucifera HOM05D003738 ORTHO05D005143 4.7e-14 82.0 107 46.7
Oeu061823.1 Olea europaea HOM05D003738 ORTHO05D005143 4.7e-14 82.0 107 48.6
VMungo0647G1516 Vigna mungo HOM05D003738 ORTHO05D005143 4.7e-14 82.0 107 46.7
AL6G28450 Arabidopsis lyrata HOM05D003738 ORTHO05D005143 6.1e-14 81.6 107 45.8
Carub.0006s1559 Capsella rubella HOM05D003738 ORTHO05D005143 6.1e-14 81.6 107 45.8
Cpa.g.sc170.16 Carica papaya HOM05D003738 ORTHO05D005143 6.1e-14 81.6 107 45.8
Gohir.A11G166650 Gossypium hirsutum HOM05D003738 ORTHO05D005143 6.1e-14 81.6 107 46.7
Sc10g0001020 Simmondsia chinensis HOM05D003738 ORTHO05D005143 6.1e-14 81.6 107 47.7
TWI77G0590 Tripterygium wilfordii HOM05D003738 ORTHO05D005143 6.1e-14 81.6 107 47.7
Phvul.008G243200 Phaseolus vulgaris HOM05D003738 ORTHO05D005143 8.0e-14 81.3 107 45.8
Psat1g052800 Pisum sativum HOM05D003738 ORTHO05D005143 8.0e-14 81.3 107 45.8
Ah.16g101450 Amaranthus hybridus HOM05D003738 ORTHO05D005143 1.0e-13 80.9 107 46.7
CDE07G0683 Ceratophyllum demersum HOM05D003738 ORTHO05D005143 1.0e-13 80.9 105 45.7
Thhalv10013104m.g Eutrema salsugineum HOM05D003738 ORTHO05D005143 1.0e-13 80.9 107 46.7
Hund13699 Selenicereus undatus HOM05D003738 ORTHO05D005143 1.0e-13 80.9 107 46.7
BcaB08g36776 Brassica carinata HOM05D003738 ORTHO05D005143 1.4e-13 80.5 107 46.7
MBI16_g21165_MAGBIO Magnolia biondii HOM05D003738 ORTHO05D005143 1.4e-13 80.5 107 46.7
arahy.Tifrunner.gnm1.ann1.UI9B1P Arachis hypogaea HOM05D003738 ORTHO05D005143 1.8e-13 80.1 107 46.7
COL.COLO4_27155 Corchorus olitorius HOM05D003738 ORTHO05D005143 1.8e-13 80.1 107 44.9
Duzib138G1092 Durio zibethinus HOM05D003738 ORTHO05D005143 1.8e-13 80.1 107 45.8
THA.LOC104820853 Tarenaya hassleriana HOM05D003738 ORTHO05D005143 1.8e-13 80.1 107 46.7
EL10Ac2g04518 Beta vulgaris HOM05D003738 ORTHO05D005143 2.3e-13 79.7 106 44.3
CDE06G1483 Ceratophyllum demersum HOM05D003738 ORTHO05D005143 2.3e-13 79.7 107 45.8
AUR62023216 Chenopodium quinoa HOM05D003738 ORTHO05D005143 2.3e-13 79.7 107 44.9
AUR62023263 Chenopodium quinoa HOM05D003738 ORTHO05D005143 2.3e-13 79.7 107 44.9
Lsat_1_v5_gn_2_80860 Lactuca sativa HOM05D003738 ORTHO05D005143 3.0e-13 79.3 107 44.9
SHI25638 Sapria himalayana HOM05D003738 ORTHO05D005143 3.0e-13 79.3 107 45.8
Aqoxy3G00165 Aquilegia oxysepala HOM05D003738 ORTHO05D005143 5.2e-13 78.6 107 45.8
AT5G17380 Arabidopsis thaliana HOM05D003738 ORTHO05D005143 5.2e-13 78.6 107 44.9
PSO017G1959 Papaver somniferum HOM05D003738 ORTHO05D005143 1.2e-12 77.4 107 45.8
PSO170G1643 Papaver somniferum HOM05D003738 ORTHO05D005143 1.2e-12 77.4 107 45.8
Rhsim10G0073600 Rhododendron simsii HOM05D003738 ORTHO05D000007 2.0e-12 76.6 56 71.4
SEGI_09825 Sequoiadendron giganteum HOM05D003738 ORTHO05D005143 2.0e-12 76.6 107 43.0
Mapoly0099s0049 Marchantia polymorpha HOM05D003738 ORTHO05D005143 3.4e-12 75.9 107 41.1
PSO455G0115 Papaver somniferum HOM05D003738 ORTHO05D005143 3.4e-12 75.9 107 44.9
Rhsim10G0075800 Rhododendron simsii HOM05D003738 ORTHO05D005143 3.4e-12 75.9 105 46.7
Rhsim10G0074000 Rhododendron simsii HOM05D003738 ORTHO05D005143 4.4e-12 75.5 106 46.2
AagrBONN_evm.TU.Sc2ySwM_369.580 Anthoceros agrestis HOM05D003738 ORTHO05D005143 1.7e-11 73.6 107 41.1
Pp3c3_25360 Physcomitrium patens HOM05D003738 ORTHO05D005143 1.7e-11 73.6 107 42.1
Duzib114G0391 Durio zibethinus HOM05D003738 ORTHO05D005143 2.9e-11 72.8 109 42.2
SMO196G0015 Selaginella moellendorffii HOM05D003738 ORTHO05D005143 1.1e-10 70.9 105 40.0
Rhsim04G0154500 Rhododendron simsii HOM05D011579 ORTHO05D011435 3.5e-09 65.9 50 58.0
Rhsim10G0075200 Rhododendron simsii HOM05D003738 ORTHO05D005143 7.8e-09 64.7 50 64.0
RhsimUnG0202300 Rhododendron simsii HOM05D003738 ORTHO05D005143 3.0e-08 62.8 50 62.0
vmacro16050 Vaccinium macrocarpon HOM05D000176 ORTHO05D000106 3.9e-08 62.4 87 35.6
CBR_g39224 Chara braunii HOM05D003738 ORTHO05D005143 3.3e-07 59.3 104 37.5
vmacro03392 Vaccinium macrocarpon HOM05D000176 ORTHO05D000106 3.3e-07 59.3 82 36.6
Rhsim10G0126300 Rhododendron simsii HOM05D011579 ORTHO05D011435 4.3e-07 58.9 84 34.5
RhsimUnG0076900 Rhododendron simsii HOM05D011579 ORTHO05D011435 1.2e-06 57.4 35 60.0
arahy.Tifrunner.gnm1.ann1.3J26XN Arachis hypogaea HOM05D003738 ORTHO05D005143 2.8e-06 56.2 50 56.0
arahy.Tifrunner.gnm1.ann1.86RIW1 Arachis hypogaea HOM05D003738 ORTHO05D005143 3.6e-06 55.8 49 53.1
arahy.Tifrunner.gnm1.ann1.XG2Q3Z Arachis hypogaea HOM05D003738 ORTHO05D005143 4.7e-06 55.5 49 57.1


User provided reference genes

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