Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0075700 Rhododendron simsii HOM05D003738 ORTHO05D050681 1.3e-92 343.2 188 100.0
Rhsim10G0074200 Rhododendron simsii HOM05D003738 ORTHO05D005143 1.5e-40 170.2 173 60.7
Rhsim10G0074800 Rhododendron simsii HOM05D003738 ORTHO05D005143 9.5e-40 167.5 173 60.1
Rhsim10G0075300 Rhododendron simsii HOM05D003738 ORTHO05D050681 2.5e-32 142.9 70 100.0
Rhsim10G0076800 Rhododendron simsii HOM05D003738 ORTHO05D005143 1.5e-24 117.1 81 81.5
vmacro05488 Vaccinium macrocarpon HOM05D003738 ORTHO05D005143 4.0e-22 109.0 81 75.3
Actinidia36345 Actinidia chinensis HOM05D003738 ORTHO05D005143 1.1e-19 100.9 81 70.4
CSS0050020 Camellia sinensis var. sinensis HOM05D003738 ORTHO05D005143 3.5e-18 95.9 81 65.4
CsaV3_4G010390 Cucumis sativus L. HOM05D003738 ORTHO05D005143 3.5e-18 95.9 81 65.4
MELO3C010381.2 Cucumis melo HOM05D003738 ORTHO05D005143 6.0e-18 95.1 81 65.4
Lj2g0012793 Lotus japonicus HOM05D003738 ORTHO05D005143 1.7e-17 93.6 84 64.3
Lj2A438T57 Lonicera japonica HOM05D003738 ORTHO05D005143 3.0e-17 92.8 80 66.2
Aa31LG11G12270 Aethionema arabicum HOM05D003738 ORTHO05D005143 8.7e-17 91.3 81 64.2
ClCG07G016430 Citrullus lanatus HOM05D003738 ORTHO05D005143 1.1e-16 90.9 81 63.0
Rhsim05G0052500 Rhododendron simsii HOM05D003738 ORTHO05D005143 1.1e-16 90.9 56 82.1
Sp6g26840 Schrenkiella parvula HOM05D003738 ORTHO05D005143 1.5e-16 90.5 81 64.2
Phvul.008G243200 Phaseolus vulgaris HOM05D003738 ORTHO05D005143 1.9e-16 90.1 81 64.2
Nitab4.5_0011323g0010 Nicotiana tabacum HOM05D003738 ORTHO05D005143 2.5e-16 89.7 83 61.4
VMungo0647G1516 Vigna mungo HOM05D003738 ORTHO05D005143 2.5e-16 89.7 141 46.8
THA.LOC104820853 Tarenaya hassleriana HOM05D003738 ORTHO05D005143 3.3e-16 89.4 81 64.2
CARHR195830 Cardamine hirsuta HOM05D003738 ORTHO05D005143 4.3e-16 89.0 81 64.2
Cc07_g08440 Coffea canephora HOM05D003738 ORTHO05D005143 4.3e-16 89.0 84 61.9
MD00G1054500 Malus domestica HOM05D003738 ORTHO05D005143 4.3e-16 89.0 82 67.1
Nitab4.5_0007290g0010 Nicotiana tabacum HOM05D003738 ORTHO05D005143 4.3e-16 89.0 83 61.4
Carub.0006s1559 Capsella rubella HOM05D003738 ORTHO05D005143 5.6e-16 88.6 81 61.7
Nitab4.5_0002456g0020 Nicotiana tabacum HOM05D003738 ORTHO05D005143 5.6e-16 88.6 83 60.2
AT5G17380 Arabidopsis thaliana HOM05D003738 ORTHO05D005143 7.3e-16 88.2 81 63.0
Ca_04135_v3 Cicer arietinum L. HOM05D003738 ORTHO05D005143 7.3e-16 88.2 83 61.4
AL6G28450 Arabidopsis lyrata HOM05D003738 ORTHO05D005143 9.6e-16 87.8 81 63.0
COL.COLO4_27155 Corchorus olitorius HOM05D003738 ORTHO05D005143 9.6e-16 87.8 80 63.8
Thecc.04G126300 Theobroma cacao HOM05D003738 ORTHO05D005143 9.6e-16 87.8 80 62.5
DCAR_025892 Daucus carota HOM05D003738 ORTHO05D005143 1.3e-15 87.4 83 62.7
Peaxi162Scf00129g00317 Petunia axillaris HOM05D003738 ORTHO05D005143 1.3e-15 87.4 82 61.0
Peaxi162Scf00458g00011 Petunia axillaris HOM05D003738 ORTHO05D005143 1.3e-15 87.4 82 61.0
TPR.G25203 Trifolium pratense HOM05D003738 ORTHO05D005143 1.3e-15 87.4 84 59.5
CANSAT78G1141 Cannabis sativa HOM05D003738 ORTHO05D005143 1.6e-15 87.0 81 63.0
MD09G1258100 Malus domestica HOM05D003738 ORTHO05D005143 1.6e-15 87.0 84 64.3
Potri.004G094600 Populus trichocarpa HOM05D003738 ORTHO05D005143 1.6e-15 87.0 84 60.7
Haze_14195 Corylus avellana HOM05D003738 ORTHO05D005143 2.1e-15 86.7 83 56.6
Nn4g24034 Nelumbo nucifera HOM05D003738 ORTHO05D005143 2.1e-15 86.7 82 61.0
Oeu061823.1 Olea europaea HOM05D003738 ORTHO05D005143 2.1e-15 86.7 82 59.8
Prupe.3G150000 Prunus persica HOM05D003738 ORTHO05D005143 2.1e-15 86.7 81 61.7
FvH4_1g28990 Fragaria vesca HOM05D003738 ORTHO05D005143 3.6e-15 85.9 81 59.3
FAN19G0768 Fragaria x ananassa HOM05D003738 ORTHO05D005143 3.6e-15 85.9 81 59.3
TWI77G0590 Tripterygium wilfordii HOM05D003738 ORTHO05D005143 3.6e-15 85.9 81 60.5
HPP92_003826 Vanilla planifolia HOM05D003738 ORTHO05D005143 3.6e-15 85.9 111 50.5
Aqoxy3G00165 Aquilegia oxysepala HOM05D003738 ORTHO05D005143 4.8e-15 85.5 80 63.8
CiPaw.03G065800 Carya illinoinensis HOM05D003738 ORTHO05D005143 4.8e-15 85.5 81 59.3
Thhalv10013104m.g Eutrema salsugineum HOM05D003738 ORTHO05D005143 4.8e-15 85.5 81 61.7
Sabra04G0063900 Salix brachista HOM05D003738 ORTHO05D005143 4.8e-15 85.5 83 60.2
Atru.chr1.1579 Acer truncatum HOM05D003738 ORTHO05D005143 6.2e-15 85.1 86 58.1
MSTRG.15310 Avicennia marina HOM05D003738 ORTHO05D005143 6.2e-15 85.1 85 58.8
Cfa007882 Carpinus fangiana HOM05D003738 ORTHO05D005143 6.2e-15 85.1 83 56.6
Lsat_1_v5_gn_2_80860 Lactuca sativa HOM05D003738 ORTHO05D005143 6.2e-15 85.1 81 59.3
Ciclev10011371m.g Citrus clementina HOM05D003738 ORTHO05D005143 8.1e-15 84.7 81 60.5
COL.COLO4_12270 Corchorus olitorius HOM05D003738 ORTHO05D005143 8.1e-15 84.7 80 62.5
Gohir.D11G173000 Gossypium hirsutum HOM05D003738 ORTHO05D005143 1.1e-14 84.3 80 61.2
Medtr6g004200 Medicago truncatula HOM05D003738 ORTHO05D005143 1.1e-14 84.3 84 59.5
Solyc02g091100.3 Solanum lycopersicum HOM05D003738 ORTHO05D005143 1.1e-14 84.3 83 57.8
Sopen02g035750 Solanum pennellii HOM05D003738 ORTHO05D005143 1.1e-14 84.3 83 57.8
TWI74G0253 Tripterygium wilfordii HOM05D003738 ORTHO05D005143 1.1e-14 84.3 81 59.3
Duzib133G1513 Durio zibethinus HOM05D003738 ORTHO05D005143 1.4e-14 84.0 80 61.2
FAN26G1505 Fragaria x ananassa HOM05D003738 ORTHO05D005143 1.4e-14 84.0 81 58.0
RcHm_v2.0_Chr3g0494041 Rosa chinensis HOM05D003738 ORTHO05D005143 1.4e-14 84.0 82 57.3
Sed0022193 Sechium edule HOM05D003738 ORTHO05D005143 1.4e-14 84.0 85 58.8
CAN.G625.63 Capsicum annuum HOM05D003738 ORTHO05D005143 1.8e-14 83.6 83 57.8
Eucgr.F02797 Eucalyptus grandis HOM05D003738 ORTHO05D005143 1.8e-14 83.6 81 61.7
SGA_v2.0_scaffold329G48870 Striga asiatica HOM05D003738 ORTHO05D005143 2.4e-14 83.2 82 59.8
Duzib138G1092 Durio zibethinus HOM05D003738 ORTHO05D005143 3.1e-14 82.8 80 60.0
Glyma.02G238800 Glycine max HOM05D003738 ORTHO05D005143 3.1e-14 82.8 84 58.3
Manes.01G113700 Manihot esculenta HOM05D003738 ORTHO05D005143 3.1e-14 82.8 55 78.2
BcaB08g36776 Brassica carinata HOM05D003738 ORTHO05D005143 5.3e-14 82.0 78 60.3
Ciclev10011616m.g Citrus clementina HOM05D003738 ORTHO05D005143 5.3e-14 82.0 81 59.3
Lalb_Chr02g0160571 Lupinus albus HOM05D003738 ORTHO05D005143 5.3e-14 82.0 81 60.5
Gorai.007G185300 Gossypium raimondii HOM05D003738 ORTHO05D005143 9.0e-14 81.3 80 60.0
A10p22030 Brassica napus HOM05D003738 ORTHO05D005143 1.2e-13 80.9 81 58.0
C09p59780 Brassica napus HOM05D003738 ORTHO05D005143 1.2e-13 80.9 78 60.3
BraA10t44260Z Brassica rapa HOM05D003738 ORTHO05D005143 1.2e-13 80.9 81 58.0
Cpa.g.sc170.16 Carica papaya HOM05D003738 ORTHO05D005143 1.2e-13 80.9 80 61.2
FAN23G1334 Fragaria x ananassa HOM05D003738 ORTHO05D005143 1.2e-13 80.9 81 56.8
PSO455G0115 Papaver somniferum HOM05D003738 ORTHO05D005143 1.5e-13 80.5 79 57.0
Psat1g052800 Pisum sativum HOM05D003738 ORTHO05D005143 1.5e-13 80.5 84 57.1
BcaC04g18797 Brassica carinata HOM05D003738 ORTHO05D005143 2.0e-13 80.1 79 58.2
HanXRQChr07g0193781 Helianthus annuus HOM05D003738 ORTHO05D005143 2.0e-13 80.1 81 58.0
Hund13699 Selenicereus undatus HOM05D003738 ORTHO05D005143 2.0e-13 80.1 86 57.0
BolC9t58818H Brassica oleracea HOM05D003738 ORTHO05D005143 2.6e-13 79.7 78 59.0
AUR62023216 Chenopodium quinoa HOM05D003738 ORTHO05D005143 2.6e-13 79.7 85 51.8
AUR62023263 Chenopodium quinoa HOM05D003738 ORTHO05D005143 2.6e-13 79.7 85 51.8
ECA238G0020 Erigeron canadensis HOM05D003738 ORTHO05D005143 2.6e-13 79.7 86 54.7
PSO170G1643 Papaver somniferum HOM05D003738 ORTHO05D005143 3.4e-13 79.3 80 56.2
PGSC0003DMG400030633 Solanum tuberosum HOM05D003738 ORTHO05D005143 3.4e-13 79.3 83 55.4
Migut.L00189 Erythranthe guttata HOM05D003738 ORTHO05D005143 7.6e-13 78.2 81 56.8
Sc10g0001020 Simmondsia chinensis HOM05D003738 ORTHO05D005143 7.6e-13 78.2 83 55.4
Ah.16g101450 Amaranthus hybridus HOM05D003738 ORTHO05D005143 1.3e-12 77.4 86 51.2
MBI16_g21165_MAGBIO Magnolia biondii HOM05D003738 ORTHO05D005143 1.3e-12 77.4 79 55.7
SalBow4G0814 Salvia bowleyana HOM05D003738 ORTHO05D005143 2.2e-12 76.6 81 56.8
CDE07G0683 Ceratophyllum demersum HOM05D003738 ORTHO05D005143 3.8e-12 75.9 79 57.0
Lalb_Chr06g0176761 Lupinus albus HOM05D003738 ORTHO05D005143 3.8e-12 75.9 54 68.5
Glyma.14G207700 Glycine max HOM05D003738 ORTHO05D005143 4.9e-12 75.5 84 53.6
SHI25638 Sapria himalayana HOM05D003738 ORTHO05D005143 6.4e-12 75.1 85 55.3
CDE06G1483 Ceratophyllum demersum HOM05D003738 ORTHO05D005143 8.4e-12 74.7 78 57.7
PSO017G1959 Papaver somniferum HOM05D003738 ORTHO05D005143 8.4e-12 74.7 79 53.2
QL02p049823 Quercus lobata HOM05D003738 ORTHO05D005143 1.1e-11 74.3 77 58.4
AagrBONN_evm.TU.Sc2ySwM_369.580 Anthoceros agrestis HOM05D003738 ORTHO05D005143 4.2e-11 72.4 84 50.0
Dinv34816 Davidia involucrata HOM05D003738 ORTHO05D005143 4.2e-11 72.4 67 61.2
EL10Ac2g04518 Beta vulgaris HOM05D003738 ORTHO05D005143 5.4e-11 72.0 85 48.2
Pp3c3_25360 Physcomitrium patens HOM05D003738 ORTHO05D005143 5.4e-11 72.0 87 51.7
Os01g0505400 Oryza sativa ssp. japonica HOM05D003738 ORTHO05D005143 7.1e-11 71.6 81 48.1
Rhsim10G0076600 Rhododendron simsii HOM05D003738 ORTHO05D005143 9.3e-11 71.2 42 81.0
arahy.Tifrunner.gnm1.ann1.KYQ4XK Arachis hypogaea HOM05D003738 ORTHO05D005143 2.1e-10 70.1 86 48.8
arahy.Tifrunner.gnm1.ann1.UI9B1P Arachis hypogaea HOM05D003738 ORTHO05D005143 2.1e-10 70.1 86 48.8
ATR0057G018 Amborella trichopoda HOM05D003738 ORTHO05D005143 2.7e-10 69.7 59 61.0
Mapoly0099s0049 Marchantia polymorpha HOM05D003738 ORTHO05D005143 3.5e-10 69.3 56 57.1
TAR629G2166 Trochodendron aralioides HOM05D003738 ORTHO05D005143 3.5e-10 69.3 78 53.8
SMO196G0015 Selaginella moellendorffii HOM05D003738 ORTHO05D005143 6.0e-10 68.6 68 48.5
Zm00001eb336870 Zea mays HOM05D003738 ORTHO05D005143 7.9e-10 68.2 81 46.9
SEGI_09825 Sequoiadendron giganteum HOM05D003738 ORTHO05D005143 6.7e-09 65.1 56 60.7
Zm00001eb155100 Zea mays HOM05D003738 ORTHO05D005143 7.4e-08 61.6 53 56.6
CBR_g39223 Chara braunii HOM05D003738 ORTHO05D005143 6.2e-07 58.5 53 54.7
Gohir.A11G166650 Gossypium hirsutum HOM05D003738 ORTHO05D005143 6.9e-06 55.1 80 47.5


User provided reference genes

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