Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0075300 Rhododendron simsii HOM05D003738 ORTHO05D050681 2.1e-35 151.8 73 100.0
Rhsim10G0075700 Rhododendron simsii HOM05D003738 ORTHO05D050681 4.4e-33 144.1 70 100.0
vmacro05488 Vaccinium macrocarpon HOM05D003738 ORTHO05D005143 1.0e-18 96.3 55 87.3
Rhsim10G0076800 Rhododendron simsii HOM05D003738 ORTHO05D005143 3.0e-18 94.7 55 87.3
Actinidia36345 Actinidia chinensis HOM05D003738 ORTHO05D005143 2.0e-17 92.0 56 83.9
CSS0050020 Camellia sinensis var. sinensis HOM05D003738 ORTHO05D005143 3.4e-17 91.3 56 82.1
Rhsim05G0052500 Rhododendron simsii HOM05D003738 ORTHO05D005143 3.4e-17 91.3 55 83.6
MELO3C010381.2 Cucumis melo HOM05D003738 ORTHO05D005143 9.8e-17 89.7 56 78.6
CsaV3_4G010390 Cucumis sativus L. HOM05D003738 ORTHO05D005143 1.7e-16 89.0 56 76.8
ClCG07G016430 Citrullus lanatus HOM05D003738 ORTHO05D005143 2.8e-16 88.2 56 76.8
Nitab4.5_0011323g0010 Nicotiana tabacum HOM05D003738 ORTHO05D005143 4.9e-16 87.4 56 76.8
Nitab4.5_0007290g0010 Nicotiana tabacum HOM05D003738 ORTHO05D005143 8.3e-16 86.7 56 76.8
CANSAT78G1141 Cannabis sativa HOM05D003738 ORTHO05D005143 1.1e-15 86.3 56 78.6
Lj2A438T57 Lonicera japonica HOM05D003738 ORTHO05D005143 1.1e-15 86.3 55 80.0
Nitab4.5_0002456g0020 Nicotiana tabacum HOM05D003738 ORTHO05D005143 1.1e-15 86.3 56 75.0
Rhsim10G0074200 Rhododendron simsii HOM05D003738 ORTHO05D005143 1.4e-15 85.9 55 81.8
Rhsim10G0074800 Rhododendron simsii HOM05D003738 ORTHO05D005143 1.4e-15 85.9 55 81.8
MD00G1054500 Malus domestica HOM05D003738 ORTHO05D005143 1.8e-15 85.5 56 76.8
RcHm_v2.0_Chr3g0494041 Rosa chinensis HOM05D003738 ORTHO05D005143 1.8e-15 85.5 56 75.0
Nn4g24034 Nelumbo nucifera HOM05D003738 ORTHO05D005143 2.4e-15 85.1 54 77.8
Solyc02g091100.3 Solanum lycopersicum HOM05D003738 ORTHO05D005143 2.4e-15 85.1 56 75.0
Sopen02g035750 Solanum pennellii HOM05D003738 ORTHO05D005143 2.4e-15 85.1 56 75.0
Cc07_g08440 Coffea canephora HOM05D003738 ORTHO05D005143 3.2e-15 84.7 55 78.2
SGA_v2.0_scaffold329G48870 Striga asiatica HOM05D003738 ORTHO05D005143 3.2e-15 84.7 56 75.0
Aa31LG11G12270 Aethionema arabicum HOM05D003738 ORTHO05D005143 4.1e-15 84.3 55 78.2
FvH4_1g28990 Fragaria vesca HOM05D003738 ORTHO05D005143 4.1e-15 84.3 56 73.2
FAN19G0768 Fragaria x ananassa HOM05D003738 ORTHO05D005143 4.1e-15 84.3 56 73.2
Lj2g0012793 Lotus japonicus HOM05D003738 ORTHO05D005143 4.1e-15 84.3 56 71.4
MD09G1258100 Malus domestica HOM05D003738 ORTHO05D005143 4.1e-15 84.3 56 75.0
HPP92_003826 Vanilla planifolia HOM05D003738 ORTHO05D005143 5.4e-15 84.0 54 75.9
Atru.chr1.1579 Acer truncatum HOM05D003738 ORTHO05D005143 7.0e-15 83.6 55 74.5
Aqoxy3G00165 Aquilegia oxysepala HOM05D003738 ORTHO05D005143 7.0e-15 83.6 54 75.9
Manes.01G113700 Manihot esculenta HOM05D003738 ORTHO05D005143 7.0e-15 83.6 55 78.2
Phvul.008G243200 Phaseolus vulgaris HOM05D003738 ORTHO05D005143 9.2e-15 83.2 56 75.0
Prupe.3G150000 Prunus persica HOM05D003738 ORTHO05D005143 9.2e-15 83.2 55 76.4
Glyma.02G238800 Glycine max HOM05D003738 ORTHO05D005143 1.2e-14 82.8 58 69.0
MSTRG.15310 Avicennia marina HOM05D003738 ORTHO05D005143 1.6e-14 82.4 56 73.2
FAN26G1505 Fragaria x ananassa HOM05D003738 ORTHO05D005143 1.6e-14 82.4 56 71.4
Peaxi162Scf00129g00317 Petunia axillaris HOM05D003738 ORTHO05D005143 1.6e-14 82.4 55 72.7
Peaxi162Scf00458g00011 Petunia axillaris HOM05D003738 ORTHO05D005143 1.6e-14 82.4 55 72.7
Potri.004G094600 Populus trichocarpa HOM05D003738 ORTHO05D005143 2.0e-14 82.0 54 74.1
Sed0022193 Sechium edule HOM05D003738 ORTHO05D005143 2.0e-14 82.0 56 75.0
TPR.G25203 Trifolium pratense HOM05D003738 ORTHO05D005143 2.0e-14 82.0 55 74.5
VMungo0647G1516 Vigna mungo HOM05D003738 ORTHO05D005143 2.0e-14 82.0 56 75.0
AL6G28450 Arabidopsis lyrata HOM05D003738 ORTHO05D005143 2.7e-14 81.6 55 76.4
AT5G17380 Arabidopsis thaliana HOM05D003738 ORTHO05D005143 2.7e-14 81.6 55 76.4
CAN.G625.63 Capsicum annuum HOM05D003738 ORTHO05D005143 2.7e-14 81.6 56 71.4
CiPaw.03G065800 Carya illinoinensis HOM05D003738 ORTHO05D005143 2.7e-14 81.6 55 72.7
Thhalv10013104m.g Eutrema salsugineum HOM05D003738 ORTHO05D005143 2.7e-14 81.6 55 76.4
Sp6g26840 Schrenkiella parvula HOM05D003738 ORTHO05D005143 2.7e-14 81.6 55 76.4
Ciclev10011371m.g Citrus clementina HOM05D003738 ORTHO05D005143 3.5e-14 81.3 56 71.4
BcaB08g36776 Brassica carinata HOM05D003738 ORTHO05D005143 4.6e-14 80.9 55 74.5
Ca_04135_v3 Cicer arietinum L. HOM05D003738 ORTHO05D005143 4.6e-14 80.9 55 74.5
Haze_14195 Corylus avellana HOM05D003738 ORTHO05D005143 4.6e-14 80.9 55 70.9
BcaC04g18797 Brassica carinata HOM05D003738 ORTHO05D005143 5.9e-14 80.5 55 74.5
A10p22030 Brassica napus HOM05D003738 ORTHO05D005143 5.9e-14 80.5 55 74.5
C09p59780 Brassica napus HOM05D003738 ORTHO05D005143 5.9e-14 80.5 55 74.5
BraA10t44260Z Brassica rapa HOM05D003738 ORTHO05D005143 5.9e-14 80.5 55 74.5
CARHR195830 Cardamine hirsuta HOM05D003738 ORTHO05D005143 5.9e-14 80.5 55 74.5
Cfa007882 Carpinus fangiana HOM05D003738 ORTHO05D005143 5.9e-14 80.5 55 70.9
Lsat_1_v5_gn_2_80860 Lactuca sativa HOM05D003738 ORTHO05D005143 5.9e-14 80.5 54 74.1
Sabra04G0063900 Salix brachista HOM05D003738 ORTHO05D005143 5.9e-14 80.5 54 72.2
PGSC0003DMG400030633 Solanum tuberosum HOM05D003738 ORTHO05D005143 5.9e-14 80.5 56 71.4
THA.LOC104820853 Tarenaya hassleriana HOM05D003738 ORTHO05D005143 5.9e-14 80.5 55 74.5
Migut.L00189 Erythranthe guttata HOM05D003738 ORTHO05D005143 7.8e-14 80.1 56 71.4
PSO170G1643 Papaver somniferum HOM05D003738 ORTHO05D005143 7.8e-14 80.1 54 72.2
PSO455G0115 Papaver somniferum HOM05D003738 ORTHO05D005143 7.8e-14 80.1 54 72.2
BolC9t58818H Brassica oleracea HOM05D003738 ORTHO05D005143 1.3e-13 79.3 55 72.7
Carub.0006s1559 Capsella rubella HOM05D003738 ORTHO05D005143 1.3e-13 79.3 57 70.2
FAN23G1334 Fragaria x ananassa HOM05D003738 ORTHO05D005143 1.3e-13 79.3 56 69.6
Lalb_Chr02g0160571 Lupinus albus HOM05D003738 ORTHO05D005143 1.3e-13 79.3 55 69.1
Medtr6g004200 Medicago truncatula HOM05D003738 ORTHO05D005143 1.3e-13 79.3 55 72.7
Oeu061823.1 Olea europaea HOM05D003738 ORTHO05D005143 1.3e-13 79.3 55 70.9
MBI16_g21165_MAGBIO Magnolia biondii HOM05D003738 ORTHO05D005143 1.7e-13 79.0 53 73.6
Ciclev10011616m.g Citrus clementina HOM05D003738 ORTHO05D005143 2.3e-13 78.6 56 69.6
SHI25638 Sapria himalayana HOM05D003738 ORTHO05D005143 2.9e-13 78.2 55 72.7
DCAR_025892 Daucus carota HOM05D003738 ORTHO05D005143 3.9e-13 77.8 55 70.9
HanXRQChr07g0193781 Helianthus annuus HOM05D003738 ORTHO05D005143 3.9e-13 77.8 56 67.9
Eucgr.F02797 Eucalyptus grandis HOM05D003738 ORTHO05D005143 5.0e-13 77.4 55 70.9
Sc10g0001020 Simmondsia chinensis HOM05D003738 ORTHO05D005143 5.0e-13 77.4 54 72.2
Gohir.D11G173000 Gossypium hirsutum HOM05D003738 ORTHO05D005143 6.6e-13 77.0 54 74.1
Gorai.007G185300 Gossypium raimondii HOM05D003738 ORTHO05D005143 6.6e-13 77.0 54 74.1
Thecc.04G126300 Theobroma cacao HOM05D003738 ORTHO05D005143 6.6e-13 77.0 54 72.2
TWI77G0590 Tripterygium wilfordii HOM05D003738 ORTHO05D005143 6.6e-13 77.0 55 70.9
Cpa.g.sc170.16 Carica papaya HOM05D003738 ORTHO05D005143 8.6e-13 76.6 54 74.1
COL.COLO4_27155 Corchorus olitorius HOM05D003738 ORTHO05D005143 8.6e-13 76.6 54 72.2
Duzib133G1513 Durio zibethinus HOM05D003738 ORTHO05D005143 8.6e-13 76.6 54 72.2
Lalb_Chr06g0176761 Lupinus albus HOM05D003738 ORTHO05D005143 8.6e-13 76.6 54 68.5
Psat1g052800 Pisum sativum HOM05D003738 ORTHO05D005143 8.6e-13 76.6 55 70.9
Ah.16g101450 Amaranthus hybridus HOM05D003738 ORTHO05D005143 1.1e-12 76.3 55 65.5
ECA238G0020 Erigeron canadensis HOM05D003738 ORTHO05D005143 1.1e-12 76.3 53 71.7
QL02p049823 Quercus lobata HOM05D003738 ORTHO05D005143 1.1e-12 76.3 54 70.4
TWI74G0253 Tripterygium wilfordii HOM05D003738 ORTHO05D005143 1.1e-12 76.3 54 70.4
CDE06G1483 Ceratophyllum demersum HOM05D003738 ORTHO05D005143 1.5e-12 75.9 54 70.4
CDE07G0683 Ceratophyllum demersum HOM05D003738 ORTHO05D005143 1.5e-12 75.9 54 68.5
COL.COLO4_12270 Corchorus olitorius HOM05D003738 ORTHO05D005143 1.9e-12 75.5 54 70.4
Duzib138G1092 Durio zibethinus HOM05D003738 ORTHO05D005143 1.9e-12 75.5 55 69.1
PSO017G1959 Papaver somniferum HOM05D003738 ORTHO05D005143 2.5e-12 75.1 54 66.7
Glyma.14G207700 Glycine max HOM05D003738 ORTHO05D005143 3.3e-12 74.7 51 72.5
SalBow4G0814 Salvia bowleyana HOM05D003738 ORTHO05D005143 5.6e-12 73.9 54 68.5
Hund13699 Selenicereus undatus HOM05D003738 ORTHO05D005143 5.6e-12 73.9 54 66.7
AagrBONN_evm.TU.Sc2ySwM_369.580 Anthoceros agrestis HOM05D003738 ORTHO05D005143 1.2e-11 72.8 55 63.6
Os01g0505400 Oryza sativa ssp. japonica HOM05D003738 ORTHO05D005143 1.6e-11 72.4 53 64.2
arahy.Tifrunner.gnm1.ann1.KYQ4XK Arachis hypogaea HOM05D003738 ORTHO05D005143 2.8e-11 71.6 53 66.0
arahy.Tifrunner.gnm1.ann1.UI9B1P Arachis hypogaea HOM05D003738 ORTHO05D005143 2.8e-11 71.6 53 66.0
AUR62023263 Chenopodium quinoa HOM05D003738 ORTHO05D005143 2.8e-11 71.6 54 61.1
Rhsim10G0076600 Rhododendron simsii HOM05D003738 ORTHO05D005143 2.8e-11 71.6 42 81.0
Pp3c3_25360 Physcomitrium patens HOM05D003738 ORTHO05D005143 3.6e-11 71.2 55 63.6
ATR0057G018 Amborella trichopoda HOM05D003738 ORTHO05D005143 6.1e-11 70.5 59 61.0
EL10Ac2g04518 Beta vulgaris HOM05D003738 ORTHO05D005143 8.0e-11 70.1 55 61.8
AUR62023216 Chenopodium quinoa HOM05D003738 ORTHO05D005143 8.0e-11 70.1 54 61.1
Zm00001eb336870 Zea mays HOM05D003738 ORTHO05D005143 1.4e-10 69.3 53 62.3
Dinv34816 Davidia involucrata HOM05D003738 ORTHO05D005143 1.8e-10 68.9 41 85.4
Mapoly0099s0049 Marchantia polymorpha HOM05D003738 ORTHO05D005143 3.1e-10 68.2 54 57.4
SMO196G0015 Selaginella moellendorffii HOM05D003738 ORTHO05D005143 3.1e-10 68.2 67 47.8
TAR629G2166 Trochodendron aralioides HOM05D003738 ORTHO05D005143 3.1e-10 68.2 54 64.8
SEGI_09825 Sequoiadendron giganteum HOM05D003738 ORTHO05D005143 5.8e-09 63.9 54 61.1
Zm00001eb155100 Zea mays HOM05D003738 ORTHO05D005143 2.2e-08 62.0 53 56.6
CBR_g39223 Chara braunii HOM05D003738 ORTHO05D005143 1.9e-07 58.9 53 54.7


User provided reference genes

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