Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0074800 Rhododendron simsii HOM05D003738 ORTHO05D005143 2.0e-186 655.6 328 100.0
Rhsim10G0074200 Rhododendron simsii HOM05D003738 ORTHO05D005143 1.5e-120 436.8 222 98.2
vmacro05488 Vaccinium macrocarpon HOM05D003738 ORTHO05D005143 2.5e-112 409.5 340 65.6
Rhsim10G0076800 Rhododendron simsii HOM05D003738 ORTHO05D005143 8.1e-111 404.4 373 61.9
Actinidia36345 Actinidia chinensis HOM05D003738 ORTHO05D005143 3.9e-105 385.6 342 61.7
Lj2A438T57 Lonicera japonica HOM05D003738 ORTHO05D005143 9.6e-104 380.9 364 58.2
Peaxi162Scf00129g00317 Petunia axillaris HOM05D003738 ORTHO05D005143 9.6e-104 380.9 394 55.6
Solyc02g091100.3 Solanum lycopersicum HOM05D003738 ORTHO05D005143 1.6e-103 380.2 361 58.4
Sopen02g035750 Solanum pennellii HOM05D003738 ORTHO05D005143 1.6e-103 380.2 361 58.4
Peaxi162Scf00458g00011 Petunia axillaris HOM05D003738 ORTHO05D005143 2.1e-103 379.8 394 55.3
Nitab4.5_0011323g0010 Nicotiana tabacum HOM05D003738 ORTHO05D005143 3.6e-103 379.0 339 60.2
Atru.chr1.1579 Acer truncatum HOM05D003738 ORTHO05D005143 4.0e-102 375.6 342 59.6
Nitab4.5_0007290g0010 Nicotiana tabacum HOM05D003738 ORTHO05D005143 5.2e-102 375.2 390 54.9
PGSC0003DMG400030633 Solanum tuberosum HOM05D003738 ORTHO05D005143 1.2e-101 374.0 361 57.6
CANSAT78G1141 Cannabis sativa HOM05D003738 ORTHO05D005143 1.5e-101 373.6 341 60.1
CAN.G625.63 Capsicum annuum HOM05D003738 ORTHO05D005143 1.5e-101 373.6 361 57.3
Potri.004G094600 Populus trichocarpa HOM05D003738 ORTHO05D005143 1.5e-101 373.6 364 56.3
Ciclev10011371m.g Citrus clementina HOM05D003738 ORTHO05D005143 3.4e-101 372.5 339 59.6
Nitab4.5_0002456g0020 Nicotiana tabacum HOM05D003738 ORTHO05D005143 9.9e-101 370.9 339 59.0
TWI74G0253 Tripterygium wilfordii HOM05D003738 ORTHO05D005143 1.7e-100 370.2 364 58.5
Manes.01G113700 Manihot esculenta HOM05D003738 ORTHO05D005143 2.2e-100 369.8 356 59.6
Nn4g24034 Nelumbo nucifera HOM05D003738 ORTHO05D005143 2.2e-100 369.8 365 56.7
Sabra04G0063900 Salix brachista HOM05D003738 ORTHO05D005143 2.9e-100 369.4 341 58.1
RcHm_v2.0_Chr3g0494041 Rosa chinensis HOM05D003738 ORTHO05D005143 1.1e-99 367.5 342 58.5
Migut.L00189 Erythranthe guttata HOM05D003738 ORTHO05D005143 4.2e-99 365.5 351 57.5
Cpa.g.sc170.16 Carica papaya HOM05D003738 ORTHO05D005143 5.4e-99 365.2 344 58.4
Glyma.02G238800 Glycine max HOM05D003738 ORTHO05D005143 7.1e-99 364.8 391 54.5
Gorai.007G185300 Gossypium raimondii HOM05D003738 ORTHO05D005143 7.1e-99 364.8 342 59.4
Cc07_g08440 Coffea canephora HOM05D003738 ORTHO05D005143 9.3e-99 364.4 364 57.1
Gohir.D11G173000 Gossypium hirsutum HOM05D003738 ORTHO05D005143 9.3e-99 364.4 342 59.4
Prupe.3G150000 Prunus persica HOM05D003738 ORTHO05D005143 9.3e-99 364.4 364 57.4
MD00G1054500 Malus domestica HOM05D003738 ORTHO05D005143 1.2e-98 364.0 343 58.6
TWI77G0590 Tripterygium wilfordii HOM05D003738 ORTHO05D005143 1.2e-98 364.0 364 56.9
ECA238G0020 Erigeron canadensis HOM05D003738 ORTHO05D005143 1.6e-98 363.6 391 52.9
PSO170G1643 Papaver somniferum HOM05D003738 ORTHO05D005143 1.6e-98 363.6 338 57.4
HanXRQChr07g0193781 Helianthus annuus HOM05D003738 ORTHO05D005143 3.5e-98 362.5 361 55.1
Oeu061823.1 Olea europaea HOM05D003738 ORTHO05D005143 3.5e-98 362.5 396 53.0
Phvul.008G243200 Phaseolus vulgaris HOM05D003738 ORTHO05D005143 3.5e-98 362.5 390 53.8
PSO455G0115 Papaver somniferum HOM05D003738 ORTHO05D005143 4.6e-98 362.1 338 57.1
Lj2g0012793 Lotus japonicus HOM05D003738 ORTHO05D005143 1.3e-97 360.5 370 54.9
HPP92_003826 Vanilla planifolia HOM05D003738 ORTHO05D005143 1.7e-97 360.1 335 57.9
MELO3C010381.2 Cucumis melo HOM05D003738 ORTHO05D005143 2.3e-97 359.8 368 55.2
CsaV3_4G010390 Cucumis sativus L. HOM05D003738 ORTHO05D005143 2.3e-97 359.8 368 55.2
PSO017G1959 Papaver somniferum HOM05D003738 ORTHO05D005143 2.3e-97 359.8 348 56.0
VMungo0647G1516 Vigna mungo HOM05D003738 ORTHO05D005143 2.3e-97 359.8 390 53.6
Cfa007882 Carpinus fangiana HOM05D003738 ORTHO05D005143 3.0e-97 359.4 336 58.0
Ca_04135_v3 Cicer arietinum L. HOM05D003738 ORTHO05D005143 5.1e-97 358.6 358 56.4
FvH4_1g28990 Fragaria vesca HOM05D003738 ORTHO05D005143 5.1e-97 358.6 346 56.1
MD09G1258100 Malus domestica HOM05D003738 ORTHO05D005143 5.1e-97 358.6 343 58.0
ClCG07G016430 Citrullus lanatus HOM05D003738 ORTHO05D005143 8.7e-97 357.8 365 54.5
COL.COLO4_27155 Corchorus olitorius HOM05D003738 ORTHO05D005143 8.7e-97 357.8 362 55.5
THA.LOC104820853 Tarenaya hassleriana HOM05D003738 ORTHO05D005143 8.7e-97 357.8 336 58.3
Aqoxy3G00165 Aquilegia oxysepala HOM05D003738 ORTHO05D005143 1.1e-96 357.5 343 58.0
Duzib133G1513 Durio zibethinus HOM05D003738 ORTHO05D005143 1.1e-96 357.5 361 55.4
FAN19G0768 Fragaria x ananassa HOM05D003738 ORTHO05D005143 1.1e-96 357.5 346 55.8
FAN26G1505 Fragaria x ananassa HOM05D003738 ORTHO05D005143 1.1e-96 357.5 346 55.8
Glyma.14G207700 Glycine max HOM05D003738 ORTHO05D005143 1.5e-96 357.1 332 58.7
CSS0050020 Camellia sinensis var. sinensis HOM05D003738 ORTHO05D005143 1.9e-96 356.7 339 59.6
Eucgr.F02797 Eucalyptus grandis HOM05D003738 ORTHO05D005143 1.9e-96 356.7 363 55.6
Lalb_Chr02g0160571 Lupinus albus HOM05D003738 ORTHO05D005143 2.5e-96 356.3 361 55.1
MBI16_g21165_MAGBIO Magnolia biondii HOM05D003738 ORTHO05D005143 2.5e-96 356.3 349 57.3
A10p22030 Brassica napus HOM05D003738 ORTHO05D005143 4.3e-96 355.5 345 57.1
BraA10t44260Z Brassica rapa HOM05D003738 ORTHO05D005143 4.3e-96 355.5 345 57.1
Lsat_1_v5_gn_2_80860 Lactuca sativa HOM05D003738 ORTHO05D005143 4.3e-96 355.5 362 52.8
Sc10g0001020 Simmondsia chinensis HOM05D003738 ORTHO05D005143 1.3e-95 354.0 364 54.9
FAN23G1334 Fragaria x ananassa HOM05D003738 ORTHO05D005143 2.8e-95 352.8 346 55.2
Ah.16g101450 Amaranthus hybridus HOM05D003738 ORTHO05D005143 4.8e-95 352.1 360 53.6
Duzib138G1092 Durio zibethinus HOM05D003738 ORTHO05D005143 4.8e-95 352.1 360 55.0
SGA_v2.0_scaffold329G48870 Striga asiatica HOM05D003738 ORTHO05D005143 8.1e-95 351.3 345 55.9
BcaB08g36776 Brassica carinata HOM05D003738 ORTHO05D005143 1.1e-94 350.9 345 56.5
Hund13699 Selenicereus undatus HOM05D003738 ORTHO05D005143 1.1e-94 350.9 356 55.1
C09p59780 Brassica napus HOM05D003738 ORTHO05D005143 1.4e-94 350.5 344 57.6
arahy.Tifrunner.gnm1.ann1.KYQ4XK Arachis hypogaea HOM05D003738 ORTHO05D005143 1.8e-94 350.1 333 57.1
MSTRG.15310 Avicennia marina HOM05D003738 ORTHO05D005143 1.8e-94 350.1 363 54.8
BcaC04g18797 Brassica carinata HOM05D003738 ORTHO05D005143 1.8e-94 350.1 336 57.7
Medtr6g004200 Medicago truncatula HOM05D003738 ORTHO05D005143 2.4e-94 349.7 342 56.4
Thhalv10013104m.g Eutrema salsugineum HOM05D003738 ORTHO05D005143 3.1e-94 349.4 343 56.9
Sed0022193 Sechium edule HOM05D003738 ORTHO05D005143 3.1e-94 349.4 359 54.9
Aa31LG11G12270 Aethionema arabicum HOM05D003738 ORTHO05D005143 4.0e-94 349.0 361 54.3
BolC9t58818H Brassica oleracea HOM05D003738 ORTHO05D005143 4.0e-94 349.0 336 57.4
CARHR195830 Cardamine hirsuta HOM05D003738 ORTHO05D005143 4.0e-94 349.0 341 56.6
Sp6g26840 Schrenkiella parvula HOM05D003738 ORTHO05D005143 5.3e-94 348.6 340 57.1
COL.COLO4_12270 Corchorus olitorius HOM05D003738 ORTHO05D005143 1.2e-93 347.4 367 54.0
TAR629G2166 Trochodendron aralioides HOM05D003738 ORTHO05D005143 1.2e-93 347.4 319 59.2
TPR.G25203 Trifolium pratense HOM05D003738 ORTHO05D005143 1.5e-93 347.1 347 55.6
Carub.0006s1559 Capsella rubella HOM05D003738 ORTHO05D005143 2.6e-93 346.3 358 55.0
AL6G28450 Arabidopsis lyrata HOM05D003738 ORTHO05D005143 5.8e-93 345.1 359 54.6
CiPaw.03G065800 Carya illinoinensis HOM05D003738 ORTHO05D005143 9.9e-93 344.4 361 53.5
SalBow4G0814 Salvia bowleyana HOM05D003738 ORTHO05D005143 1.3e-92 344.0 335 56.1
Zm00001eb336870 Zea mays HOM05D003738 ORTHO05D005143 1.3e-92 344.0 344 53.2
CDE06G1483 Ceratophyllum demersum HOM05D003738 ORTHO05D005143 1.7e-92 343.6 359 52.9
arahy.Tifrunner.gnm1.ann1.UI9B1P Arachis hypogaea HOM05D003738 ORTHO05D005143 2.9e-92 342.8 369 52.8
Psat1g052800 Pisum sativum HOM05D003738 ORTHO05D005143 3.8e-92 342.4 362 54.7
AT5G17380 Arabidopsis thaliana HOM05D003738 ORTHO05D005143 2.4e-91 339.7 365 54.0
Lalb_Chr06g0176761 Lupinus albus HOM05D003738 ORTHO05D005143 2.4e-91 339.7 335 56.1
QL02p049823 Quercus lobata HOM05D003738 ORTHO05D005143 2.4e-91 339.7 348 55.5
AUR62023263 Chenopodium quinoa HOM05D003738 ORTHO05D005143 3.2e-91 339.3 367 51.8
Haze_14195 Corylus avellana HOM05D003738 ORTHO05D005143 3.2e-91 339.3 372 52.2
CDE07G0683 Ceratophyllum demersum HOM05D003738 ORTHO05D005143 5.4e-91 338.6 294 60.5
AUR62023216 Chenopodium quinoa HOM05D003738 ORTHO05D005143 5.4e-91 338.6 358 52.5
Gohir.A11G166650 Gossypium hirsutum HOM05D003738 ORTHO05D005143 7.1e-91 338.2 342 56.4
SHI25638 Sapria himalayana HOM05D003738 ORTHO05D005143 3.0e-89 332.8 342 54.7
SEGI_09825 Sequoiadendron giganteum HOM05D003738 ORTHO05D005143 7.4e-88 328.2 351 51.9
EL10Ac2g04518 Beta vulgaris HOM05D003738 ORTHO05D005143 9.6e-88 327.8 359 51.3
Pp3c3_25360 Physcomitrium patens HOM05D003738 ORTHO05D005143 9.0e-86 321.2 340 51.5
Mapoly0099s0049 Marchantia polymorpha HOM05D003738 ORTHO05D005143 7.6e-85 318.2 359 47.1
AagrBONN_evm.TU.Sc2ySwM_369.580 Anthoceros agrestis HOM05D003738 ORTHO05D005143 1.7e-84 317.0 368 48.4
ATR0057G018 Amborella trichopoda HOM05D003738 ORTHO05D005143 9.3e-83 311.2 347 49.6
TAR374G1203 Trochodendron aralioides HOM05D003738 ORTHO05D005143 6.0e-82 308.5 291 57.4
Rhsim05G0052500 Rhododendron simsii HOM05D003738 ORTHO05D005143 3.0e-81 306.2 335 55.2
SMO196G0015 Selaginella moellendorffii HOM05D003738 ORTHO05D005143 7.9e-74 281.6 337 46.0
DCAR_025892 Daucus carota HOM05D003738 ORTHO05D005143 1.1e-67 261.2 163 79.1
Ciclev10011616m.g Citrus clementina HOM05D003738 ORTHO05D005143 5.5e-67 258.8 163 77.9
Thecc.04G126300 Theobroma cacao HOM05D003738 ORTHO05D005143 1.1e-64 251.1 184 69.6
Os01g0505400 Oryza sativa ssp. japonica HOM05D003738 ORTHO05D005143 1.5e-61 240.7 186 65.1
Rhsim10G0075800 Rhododendron simsii HOM05D003738 ORTHO05D005143 1.4e-54 217.6 308 44.5
Rhsim10G0076600 Rhododendron simsii HOM05D003738 ORTHO05D005143 2.1e-50 203.8 145 73.8
Zm00001eb155100 Zea mays HOM05D003738 ORTHO05D005143 8.2e-47 191.8 149 63.8
CBR_g39223 Chara braunii HOM05D003738 ORTHO05D005143 3.3e-40 169.9 155 55.5
HanXRQChr02g0040721 Helianthus annuus HOM05D003738 ORTHO05D005143 2.8e-39 166.8 195 46.7
Rhsim10G0075700 Rhododendron simsii HOM05D003738 ORTHO05D050681 1.8e-38 164.1 173 60.1
HanXRQChr09g0267561 Helianthus annuus HOM05D003738 ORTHO05D005143 3.0e-33 146.7 101 68.3
Dinv14852 Davidia involucrata HOM05D003738 ORTHO05D005143 5.2e-33 146.0 87 77.0
MD16G1277100 Malus domestica HOM05D003738 ORTHO05D005234 2.0e-32 144.1 120 62.5
RhsimUnG0182900 Rhododendron simsii HOM05D003738 ORTHO05D005143 4.4e-32 142.9 74 93.2
GSVIVG01030948001 Vitis vinifera HOM05D003738 ORTHO05D005143 1.9e-27 127.5 78 75.6
Dinv34815 Davidia involucrata HOM05D003738 ORTHO05D005143 7.2e-27 125.6 78 75.6
arahy.Tifrunner.gnm1.ann1.8AFI1C Arachis hypogaea HOM05D003738 ORTHO05D005143 1.2e-26 124.8 172 42.4
PRCOL_00004783 Prasinoderma coloniale HOM05D003738 ORTHO05D005143 1.8e-25 120.9 388 26.8
Ciclev10013371m.g Citrus clementina HOM05D003738 ORTHO05D005143 1.2e-24 118.2 71 76.1
GSVIVG01013575001 Vitis vinifera HOM05D003738 ORTHO05D005143 3.4e-24 116.7 75 72.0
arahy.Tifrunner.gnm1.ann1.S5LGPQ Arachis hypogaea HOM05D003738 ORTHO05D005143 1.3e-23 114.8 113 54.0
Rhsim10G0074000 Rhododendron simsii HOM05D003738 ORTHO05D005143 1.6e-21 107.8 145 44.8
Rhsim10G0075200 Rhododendron simsii HOM05D003738 ORTHO05D005143 3.5e-21 106.7 95 57.9
arahy.Tifrunner.gnm1.ann1.J2B3IW Arachis hypogaea HOM05D003738 ORTHO05D005143 2.8e-18 97.1 86 57.0
RhsimUnG0202300 Rhododendron simsii HOM05D003738 ORTHO05D005143 1.4e-17 94.7 86 58.1
Duzib114G0391 Durio zibethinus HOM05D003738 ORTHO05D005143 2.3e-17 94.0 78 62.8
CBR_g39224 Chara braunii HOM05D003738 ORTHO05D005143 1.1e-14 85.1 70 54.3
arahy.Tifrunner.gnm1.ann1.P0BYU6 Arachis hypogaea HOM05D003738 ORTHO05D005143 1.4e-14 84.7 187 37.4
Rhsim10G0075300 Rhododendron simsii HOM05D003738 ORTHO05D050681 1.4e-14 84.7 55 81.8
arahy.Tifrunner.gnm1.ann1.86RIW1 Arachis hypogaea HOM05D003738 ORTHO05D005143 4.1e-14 83.2 86 52.3
arahy.Tifrunner.gnm1.ann1.EHW2CP Arachis hypogaea HOM05D003738 ORTHO05D005143 5.4e-14 82.8 63 63.5
arahy.Tifrunner.gnm1.ann1.85I739 Arachis hypogaea HOM05D003738 ORTHO05D005143 2.7e-13 80.5 80 50.0
arahy.Tifrunner.gnm1.ann1.2D9IFX Arachis hypogaea HOM05D003738 ORTHO05D000844 7.8e-13 79.0 69 58.0
arahy.Tifrunner.gnm1.ann1.E0ZWVI Arachis hypogaea HOM05D003738 ORTHO05D005143 3.0e-12 77.0 66 51.5
arahy.Tifrunner.gnm1.ann1.AT2XXE Arachis hypogaea HOM05D003738 ORTHO05D005143 3.3e-11 73.6 159 36.5
Dinv34816 Davidia involucrata HOM05D003738 ORTHO05D005143 4.0e-09 66.6 44 81.8
Pp3c26_13760 Physcomitrium patens HOM05D002723 ORTHO05D026670 8.9e-09 65.5 149 29.5
Pp3c13_6640 Physcomitrium patens HOM05D002723 ORTHO05D026670 1.2e-08 65.1 152 29.6
arahy.Tifrunner.gnm1.ann1.3J26XN Arachis hypogaea HOM05D003738 ORTHO05D005143 1.5e-08 64.7 62 51.6
CAN.G1019.3 Capsicum annuum HOM05D003738 ORTHO05D005143 2.0e-08 64.3 60 51.7
arahy.Tifrunner.gnm1.ann1.95JV46 Arachis hypogaea HOM05D003738 ORTHO05D005143 1.7e-07 61.2 187 28.9
Ca_29261_v3 Cicer arietinum L. HOM05D002723 ORTHO05D003240 1.7e-07 61.2 168 26.8
Mapoly0002s0181 Marchantia polymorpha HOM05D000198 ORTHO05D026670 1.7e-07 61.2 145 27.6
arahy.Tifrunner.gnm1.ann1.996DKV Arachis hypogaea HOM05D003738 ORTHO05D005143 3.7e-07 60.1 44 59.1
arahy.Tifrunner.gnm1.ann1.YP6RFP Arachis hypogaea HOM05D003738 ORTHO05D005143 6.4e-07 59.3 55 52.7
Rhsim10G0073600 Rhododendron simsii HOM05D003738 ORTHO05D000007 8.3e-07 58.9 66 53.0
arahy.Tifrunner.gnm1.ann1.TLT49F Arachis hypogaea HOM05D003738 ORTHO05D005143 1.1e-06 58.5 48 56.2
arahy.Tifrunner.gnm1.ann1.XG2Q3Z Arachis hypogaea HOM05D003738 ORTHO05D005143 1.1e-06 58.5 46 58.7
AagrBONN_evm.TU.Sc2ySwM_228.1545 Anthoceros agrestis HOM05D002723 ORTHO05D026670 1.4e-06 58.2 223 26.0
arahy.Tifrunner.gnm1.ann1.N2UQDL Arachis hypogaea HOM05D003738 ORTHO05D005143 1.4e-06 58.2 39 64.1
Cpa.g.sc59.42 Carica papaya HOM05D003738 ORTHO05D005143 5.4e-06 56.2 36 66.7
arahy.Tifrunner.gnm1.ann1.LBEM0G Arachis hypogaea HOM05D003738 ORTHO05D000844 7.0e-06 55.8 45 57.8


User provided reference genes

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