Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0006500 Rhododendron simsii HOM05D005515 ORTHO05D006620 3.8e-47 191.4 115 100.0
Dinv25661 Davidia involucrata HOM05D005515 ORTHO05D006620 2.9e-39 165.2 109 84.4
CSS0007323 Camellia sinensis var. sinensis HOM05D005515 ORTHO05D006620 4.6e-37 157.9 111 72.1
Sc07g0003980 Simmondsia chinensis HOM05D005515 ORTHO05D006620 1.0e-36 156.8 109 89.0
CiPaw.04G036400 Carya illinoinensis HOM05D005515 ORTHO05D006620 1.8e-36 156.0 109 73.4
Eucgr.I01648 Eucalyptus grandis HOM05D005515 ORTHO05D006620 1.9e-35 152.5 107 86.0
Haze_14873 Corylus avellana HOM05D005515 ORTHO05D006620 4.3e-35 151.4 109 73.4
MD09G1011100 Malus domestica HOM05D005515 ORTHO05D006620 4.3e-35 151.4 107 78.5
CANSAT11G1216 Cannabis sativa HOM05D005515 ORTHO05D006620 4.8e-34 147.9 109 79.8
AUR62017824 Chenopodium quinoa HOM05D005515 ORTHO05D006620 4.8e-34 147.9 109 70.6
GSVIVG01033096001 Vitis vinifera HOM05D005515 ORTHO05D006620 6.2e-34 147.5 109 84.4
EL10Ac6g15358 Beta vulgaris HOM05D005515 ORTHO05D006620 8.1e-34 147.1 109 68.8
Actinidia05921 Actinidia chinensis HOM05D005515 ORTHO05D006620 1.4e-33 146.4 111 71.2
Prupe.3G305900 Prunus persica HOM05D005515 ORTHO05D006620 3.1e-33 145.2 109 82.6
Aqoxy5G03385 Aquilegia oxysepala HOM05D005515 ORTHO05D006620 4.0e-33 144.8 109 80.7
Aqoxy7G00951 Aquilegia oxysepala HOM05D005515 ORTHO05D006620 4.0e-33 144.8 109 80.7
Aqoxy2G02223 Aquilegia oxysepala HOM05D005515 ORTHO05D006620 5.3e-33 144.4 112 77.7
Gohir.A05G338800 Gossypium hirsutum HOM05D005515 ORTHO05D006620 5.3e-33 144.4 109 80.7
Lj1g0017105 Lotus japonicus HOM05D005515 ORTHO05D006620 5.3e-33 144.4 108 84.3
Potri.001G330400 Populus trichocarpa HOM05D005515 ORTHO05D006620 6.9e-33 144.1 110 79.1
HPP92_000347 Vanilla planifolia HOM05D005515 ORTHO05D006620 9.0e-33 143.7 112 77.7
FvH4_6g53480 Fragaria vesca HOM05D005515 ORTHO05D006620 1.2e-32 143.3 109 74.3
Lalb_Chr22g0360381 Lupinus albus HOM05D005515 ORTHO05D006620 1.2e-32 143.3 111 80.2
Hund04339 Selenicereus undatus HOM05D005515 ORTHO05D006620 2.0e-32 142.5 109 78.0
FAN09G0415 Fragaria x ananassa HOM05D005515 ORTHO05D006620 3.4e-32 141.7 109 78.0
TPR.G38294 Trifolium pratense HOM05D005515 ORTHO05D006620 3.4e-32 141.7 111 63.1
FAN05G2195 Fragaria x ananassa HOM05D005515 ORTHO05D006620 4.5e-32 141.4 109 78.0
Gohir.D07G235400 Gossypium hirsutum HOM05D005515 ORTHO05D006620 4.5e-32 141.4 109 80.7
Psat3g175680 Pisum sativum HOM05D005515 ORTHO05D006620 4.5e-32 141.4 110 63.6
Atru.chr6.2567 Acer truncatum HOM05D005515 ORTHO05D006620 1.0e-31 140.2 109 79.8
Manes.15G160700 Manihot esculenta HOM05D005515 ORTHO05D006620 1.0e-31 140.2 109 80.7
Medtr7g033490 Medicago truncatula HOM05D005515 ORTHO05D006620 1.0e-31 140.2 109 65.1
Nitab4.5_0003376g0030 Nicotiana tabacum HOM05D005515 ORTHO05D006620 1.3e-31 139.8 108 80.6
Nitab4.5_0008640g0020 Nicotiana tabacum HOM05D005515 ORTHO05D006620 1.3e-31 139.8 108 80.6
Glyma.19G091000 Glycine max HOM05D005515 ORTHO05D006620 1.7e-31 139.4 108 81.5
Dinv10962 Davidia involucrata HOM05D000504 ORTHO05D006620 2.9e-31 138.7 109 78.9
Glyma.16G056700 Glycine max HOM05D005515 ORTHO05D006620 2.9e-31 138.7 108 80.6
Gohir.A07G228200 Gossypium hirsutum HOM05D005515 ORTHO05D006620 2.9e-31 138.7 109 78.9
Gorai.001G271200 Gossypium raimondii HOM05D005515 ORTHO05D006620 2.9e-31 138.7 109 78.9
Ciclev10017250m.g Citrus clementina HOM05D005515 ORTHO05D006620 3.8e-31 138.3 109 78.0
Peaxi162Scf00881g00228 Petunia axillaris HOM05D005515 ORTHO05D006620 3.8e-31 138.3 108 78.7
Phvul.001G093800 Phaseolus vulgaris HOM05D005515 ORTHO05D006620 3.8e-31 138.3 108 79.6
Migut.K01462 Erythranthe guttata HOM05D005515 ORTHO05D006620 4.9e-31 137.9 113 79.6
Potri.017G069200 Populus trichocarpa HOM05D005515 ORTHO05D006620 4.9e-31 137.9 113 77.9
TAR374G0204 Trochodendron aralioides HOM05D005515 ORTHO05D006620 1.1e-30 136.7 107 79.4
TAR622G0361 Trochodendron aralioides HOM05D005515 ORTHO05D006620 1.4e-30 136.3 109 77.1
CAN.G1300.5 Capsicum annuum HOM05D005515 ORTHO05D006620 1.9e-30 136.0 109 78.0
Os01g0920200 Oryza sativa ssp. japonica HOM05D005515 ORTHO05D006620 1.9e-30 136.0 107 72.9
SEGI_35944 Sequoiadendron giganteum HOM05D005515 ORTHO05D006620 1.9e-30 136.0 109 78.0
Solyc02g068110.4 Solanum lycopersicum HOM05D005515 ORTHO05D006620 2.5e-30 135.6 107 78.5
Zm00001eb364510 Zea mays HOM05D005515 ORTHO05D006620 2.5e-30 135.6 107 59.8
Thecc.04G035700 Theobroma cacao HOM05D005515 ORTHO05D006620 5.5e-30 134.4 109 78.9
FAN02G1022 Fragaria x ananassa HOM05D005515 ORTHO05D006620 1.6e-29 132.9 109 71.6
Gohir.D04G077100 Gossypium hirsutum HOM05D005515 ORTHO05D006620 1.6e-29 132.9 109 75.2
Lsat_1_v5_gn_8_147620 Lactuca sativa HOM05D005515 ORTHO05D006620 1.6e-29 132.9 110 75.5
Sed0013471 Sechium edule HOM05D005515 ORTHO05D006620 2.1e-29 132.5 111 59.5
Gorai.012G087000 Gossypium raimondii HOM05D005515 ORTHO05D006620 3.5e-29 131.7 109 74.3
Oeu041666.1 Olea europaea HOM05D005515 ORTHO05D006620 3.5e-29 131.7 109 74.3
Atru.chr11.2315 Acer truncatum HOM05D005515 ORTHO05D006620 6.0e-29 131.0 113 74.3
Cc11_g16850 Coffea canephora HOM05D005515 ORTHO05D006620 1.8e-28 129.4 113 72.6
TWI36G0725 Tripterygium wilfordii HOM05D005515 ORTHO05D006620 1.8e-28 129.4 111 73.9
MSTRG.15568 Avicennia marina HOM05D005515 ORTHO05D006620 3.0e-28 128.6 115 74.8
Duzib264G0697 Durio zibethinus HOM05D005515 ORTHO05D006620 3.0e-28 128.6 109 74.3
Duzib147G1212 Durio zibethinus HOM05D005515 ORTHO05D006620 3.9e-28 128.3 109 74.3
Mapoly0005s0063 Marchantia polymorpha HOM05D005515 ORTHO05D006620 6.7e-28 127.5 109 74.3
Pp3c4_1860 Physcomitrium patens HOM05D005515 ORTHO05D006620 6.7e-28 127.5 107 75.7
Pp3c12_14240 Physcomitrium patens HOM05D005515 ORTHO05D006620 1.5e-27 126.3 107 72.0
arahy.Tifrunner.gnm1.ann1.W7YL8X Arachis hypogaea HOM05D005515 ORTHO05D006620 1.9e-27 125.9 111 75.7
arahy.Tifrunner.gnm1.ann1.Y4DWZG Arachis hypogaea HOM05D005515 ORTHO05D006620 1.9e-27 125.9 111 75.7
PSO063G5856 Papaver somniferum HOM05D005515 ORTHO05D006620 1.9e-27 125.9 109 72.5
PSO782G3173 Papaver somniferum HOM05D005515 ORTHO05D006620 1.9e-27 125.9 109 72.5
CsaV3_6G032220 Cucumis sativus L. HOM05D005515 ORTHO05D006620 2.5e-27 125.6 109 67.0
Duzib187G1157 Durio zibethinus HOM05D005515 ORTHO05D006620 7.4e-27 124.0 109 74.3
Zm00001eb143260 Zea mays HOM05D005515 ORTHO05D006620 3.7e-26 121.7 107 53.3
AL5G16230 Arabidopsis lyrata HOM05D005515 ORTHO05D006620 6.3e-26 120.9 113 69.9
Manes.12G012000 Manihot esculenta HOM05D005515 ORTHO05D006620 1.1e-25 120.2 115 69.6
Pp3c8_2660 Physcomitrium patens HOM05D005515 ORTHO05D006620 4.1e-25 118.2 109 56.9
ATR1098G146 Amborella trichopoda HOM05D005515 ORTHO05D006620 6.9e-25 117.5 121 64.5
Duzib268G1731 Durio zibethinus HOM05D005515 ORTHO05D006620 6.9e-25 117.5 113 55.8
MD00G1139400 Malus domestica HOM05D005515 ORTHO05D006620 5.9e-24 114.4 80 73.8
PGR102G1194 Punica granatum HOM05D005515 ORTHO05D006620 5.9e-24 114.4 110 67.3
Gorai.009G332600 Gossypium raimondii HOM05D005515 ORTHO05D006620 7.6e-24 114.0 116 52.6
Gohir.A05G310700 Gossypium hirsutum HOM05D005515 ORTHO05D006620 1.7e-23 112.8 96 62.5
THA.LOC104823981 Tarenaya hassleriana HOM05D005515 ORTHO05D006620 1.7e-23 112.8 114 65.8
CARHR148320 Cardamine hirsuta HOM05D005515 ORTHO05D006620 2.2e-23 112.5 112 62.5
Sabra16G0211700 Salix brachista HOM05D005515 ORTHO05D006620 9.3e-22 107.1 204 45.1
vmacro05955 Vaccinium macrocarpon HOM05D005515 ORTHO05D006620 1.2e-21 106.7 56 94.6
PGSC0003DMG401006926 Solanum tuberosum HOM05D005515 ORTHO05D006620 4.6e-21 104.8 86 77.9
MSTRG.7999 Avicennia marina HOM05D005515 ORTHO05D006620 6.1e-21 104.4 109 64.2
SMO367G0376 Selaginella moellendorffii HOM05D005515 ORTHO05D006620 6.1e-21 104.4 108 64.8
CSS0037273 Camellia sinensis var. sinensis HOM05D005515 ORTHO05D006620 2.3e-20 102.4 56 89.3
FAN14G0031 Fragaria x ananassa HOM05D005515 ORTHO05D006620 2.3e-20 102.4 86 68.6
Actinidia36201 Actinidia chinensis HOM05D005515 ORTHO05D006620 3.0e-20 102.1 86 70.9
RcHm_v2.0_Chr2g0175521 Rosa chinensis HOM05D005515 ORTHO05D006620 3.0e-20 102.1 86 64.0
Cfa009365 Carpinus fangiana HOM05D000048 ORTHO05D000445 3.9e-20 101.7 113 61.1
Sabra17G0064300 Salix brachista HOM05D005515 ORTHO05D006620 3.9e-20 101.7 107 62.6
QL02p071462 Quercus lobata HOM05D005515 ORTHO05D006620 1.1e-19 100.1 86 60.5
Migut.K00729 Erythranthe guttata HOM05D005515 ORTHO05D006620 1.5e-19 99.8 108 47.2
MELO3C011459.2 Cucumis melo HOM05D005515 ORTHO05D006620 4.3e-19 98.2 84 69.0
Carub.0005s0534 Capsella rubella HOM05D005515 ORTHO05D006620 9.7e-19 97.1 111 64.0
Ciclev10033394m.g Citrus clementina HOM05D005515 ORTHO05D006620 9.7e-19 97.1 89 73.0
Sopen02g017220 Solanum pennellii HOM05D005515 ORTHO05D006620 1.3e-18 96.7 84 58.3
AT3G27100 Arabidopsis thaliana HOM05D005515 ORTHO05D006620 3.7e-18 95.1 113 62.8
Cpa.g.sc43.50 Carica papaya HOM05D005515 ORTHO05D006620 4.8e-18 94.7 86 74.4
unitig_8.g2909 Utricularia gibba HOM05D005515 ORTHO05D006620 8.2e-18 94.0 107 60.7
Thhalv10005161m.g Eutrema salsugineum HOM05D005515 ORTHO05D006620 1.4e-17 93.2 112 60.7
SalBow7G1491 Salvia bowleyana HOM05D005515 ORTHO05D006620 1.8e-17 92.8 114 51.8
A09p03280 Brassica napus HOM05D005515 ORTHO05D006620 2.4e-17 92.4 112 60.7
HanXRQChr12g0385431 Helianthus annuus HOM05D005515 ORTHO05D006620 2.4e-17 92.4 54 79.6
BcaC04g23917 Brassica carinata HOM05D005515 ORTHO05D006620 3.1e-17 92.0 116 59.5
Nn3g16471 Nelumbo nucifera HOM05D005515 ORTHO05D006620 3.1e-17 92.0 86 72.1
Haze_12412 Corylus avellana HOM05D000048 ORTHO05D000445 4.1e-17 91.7 113 46.0
VMungo1383G1573 Vigna mungo HOM05D005515 ORTHO05D006620 4.1e-17 91.7 132 43.2
AagrBONN_evm.TU.Sc2ySwM_117.47 Anthoceros agrestis HOM05D005515 ORTHO05D006620 6.9e-17 90.9 80 56.2
BolC9t53269H Brassica oleracea HOM05D005515 ORTHO05D006620 1.2e-16 90.1 112 60.7
SalBow2G3427 Salvia bowleyana HOM05D005515 ORTHO05D006620 1.2e-16 90.1 85 54.1
SGA_v2.0_scaffold154G37170 Striga asiatica HOM05D005515 ORTHO05D006620 2.6e-16 89.0 101 67.3
BolC7t44132H Brassica oleracea HOM05D005515 ORTHO05D006620 3.4e-16 88.6 113 54.0
CDE02G3365 Ceratophyllum demersum HOM05D005515 ORTHO05D006620 1.3e-15 86.7 82 73.2
Sp2g16230 Schrenkiella parvula HOM05D005515 ORTHO05D006620 1.3e-15 86.7 112 59.8
Aa31LG2G5500 Aethionema arabicum HOM05D005515 ORTHO05D006620 1.7e-15 86.3 112 58.9
Ah.02g120510 Amaranthus hybridus HOM05D005515 ORTHO05D006620 2.2e-15 85.9 73 57.5
Gohir.D05G311500 Gossypium hirsutum HOM05D005515 ORTHO05D006620 3.8e-15 85.1 94 48.9
BraA06t27074Z Brassica rapa HOM05D005515 ORTHO05D006620 1.4e-12 76.6 113 54.0
C09p03480 Brassica napus HOM05D005515 ORTHO05D006620 3.0e-12 75.5 86 45.3
C07p36160 Brassica napus HOM05D005515 ORTHO05D006620 1.1e-11 73.6 113 54.9
A06p41490 Brassica napus HOM05D005515 ORTHO05D006620 1.5e-11 73.2 118 54.2
Actinidia30652 Actinidia chinensis HOM05D005515 ORTHO05D006620 5.7e-11 71.2 60 60.0
COL.COLO4_20393 Corchorus olitorius HOM05D005515 ORTHO05D006620 7.4e-11 70.9 58 62.1
Oeu006531.1 Olea europaea HOM05D005515 ORTHO05D006620 3.7e-10 68.6 61 57.4
MCO13G114 Micromonas commoda HOM05D005515 ORTHO05D006620 4.8e-10 68.2 87 57.5
CSS0003202 Camellia sinensis var. sinensis HOM05D005515 ORTHO05D006620 2.4e-09 65.9 62 54.8
CSS0037049 Camellia sinensis var. sinensis HOM05D005515 ORTHO05D006620 2.4e-09 65.9 62 54.8
Cre08.g370300 Chlamydomonas reinhardtii HOM05D005515 ORTHO05D006620 2.4e-09 65.9 89 37.1
BraA09t35966Z Brassica rapa HOM05D005515 ORTHO05D006620 4.1e-09 65.1 90 60.0
BcaB04g19426 Brassica carinata HOM05D005515 ORTHO05D006620 2.6e-08 62.4 80 52.5
ClCG08G010060 Citrullus lanatus HOM05D005515 ORTHO05D006620 2.9e-07 58.9 126 34.9
Nn4g22340 Nelumbo nucifera HOM05D001716 ORTHO05D004234 3.8e-07 58.5 60 75.0


User provided reference genes

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