Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0202000 Rhododendron simsii HOM05D001165 ORTHO05D001347 3.3e-81 305.1 164 100.0
Rhsim09G0200800 Rhododendron simsii HOM05D001165 ORTHO05D001347 1.7e-29 133.3 135 56.3
Rhsim09G0199300 Rhododendron simsii HOM05D001165 ORTHO05D001347 8.6e-29 131.0 134 57.5
vmacro22119 Vaccinium macrocarpon HOM05D001165 ORTHO05D001347 6.0e-22 108.2 101 57.4
GSVIVG01033464001 Vitis vinifera HOM05D001165 ORTHO05D001347 1.3e-13 80.5 54 66.7
HanXRQChr02g0054041 Helianthus annuus HOM05D001165 ORTHO05D001347 3.0e-13 79.3 62 58.1
TAR369G1100 Trochodendron aralioides HOM05D001165 ORTHO05D001347 3.9e-13 79.0 54 66.7
Dinv24043 Davidia involucrata HOM05D001165 ORTHO05D001347 1.5e-12 77.0 87 48.3
Actinidia38596 Actinidia chinensis HOM05D001165 ORTHO05D001347 2.5e-12 76.3 87 47.1
Ciclev10000251m.g Citrus clementina HOM05D001165 ORTHO05D001347 7.3e-12 74.7 72 51.4
Duzib068G0158 Durio zibethinus HOM05D001165 ORTHO05D001347 9.6e-12 74.3 82 50.0
Gohir.A07G044300 Gossypium hirsutum HOM05D001165 ORTHO05D001347 1.6e-11 73.6 63 54.0
Gohir.D07G048800 Gossypium hirsutum HOM05D001165 ORTHO05D001347 1.6e-11 73.6 63 54.0
Gorai.001G052000 Gossypium raimondii HOM05D001165 ORTHO05D001347 1.6e-11 73.6 63 54.0
Manes.09G037800 Manihot esculenta HOM05D001165 ORTHO05D001347 2.8e-11 72.8 62 56.5
CANSAT64G0692 Cannabis sativa HOM05D001165 ORTHO05D001347 4.7e-11 72.0 55 56.4
Atru.chr6.2999 Acer truncatum HOM05D001165 ORTHO05D001347 6.2e-11 71.6 55 60.0
QL06p052529 Quercus lobata HOM05D001165 ORTHO05D001347 8.1e-11 71.2 84 42.9
Lj1C1132T6 Lonicera japonica HOM05D001165 ORTHO05D001347 1.1e-10 70.9 60 55.0
Lalb_Chr16g0377271 Lupinus albus HOM05D001165 ORTHO05D001347 1.1e-10 70.9 59 57.6
Nn2g15742 Nelumbo nucifera HOM05D001165 ORTHO05D001347 1.1e-10 70.9 55 60.0
Hund16326 Selenicereus undatus HOM05D001165 ORTHO05D001347 1.1e-10 70.9 62 53.2
VMungo1215G1000 Vigna mungo HOM05D001165 ORTHO05D001347 1.4e-10 70.5 61 52.5
Thecc.09G214800 Theobroma cacao HOM05D001165 ORTHO05D001347 2.4e-10 69.7 63 52.4
Sed0019999 Sechium edule HOM05D001165 ORTHO05D001347 3.1e-10 69.3 55 56.4
DCAR_005032 Daucus carota HOM05D001165 ORTHO05D001347 4.0e-10 68.9 58 53.4
Glyma.11G083600 Glycine max HOM05D001165 ORTHO05D001347 4.0e-10 68.9 61 50.8
Glyma.01G007800 Glycine max HOM05D001165 ORTHO05D001347 5.2e-10 68.6 56 57.1
Sed0004362 Sechium edule HOM05D001165 ORTHO05D001347 5.2e-10 68.6 62 53.2
MELO3C015649.2 Cucumis melo HOM05D001165 ORTHO05D001347 9.0e-10 67.8 62 51.6
HPP92_013308 Vanilla planifolia HOM05D001165 ORTHO05D001347 9.0e-10 67.8 60 48.3
C05p09630 Brassica napus HOM05D001165 ORTHO05D001347 1.2e-09 67.4 60 53.3
BolC5t29705H Brassica oleracea HOM05D001165 ORTHO05D001347 1.2e-09 67.4 60 53.3
Phvul.002G113900 Phaseolus vulgaris HOM05D001165 ORTHO05D001347 1.2e-09 67.4 77 41.6
Gorai.002G216500 Gossypium raimondii HOM05D001165 ORTHO05D001347 1.5e-09 67.0 62 48.4
Sp1g10040 Schrenkiella parvula HOM05D001165 ORTHO05D001347 1.5e-09 67.0 62 51.6
Glyma.01G160300 Glycine max HOM05D001165 ORTHO05D001347 2.0e-09 66.6 59 50.8
arahy.Tifrunner.gnm1.ann1.VQI5ED Arachis hypogaea HOM05D001165 ORTHO05D001347 2.6e-09 66.2 88 40.9
A06p08030 Brassica napus HOM05D001165 ORTHO05D001347 2.6e-09 66.2 52 59.6
BraA06t24002Z Brassica rapa HOM05D001165 ORTHO05D001347 2.6e-09 66.2 52 59.6
Duzib205G0564 Durio zibethinus HOM05D001165 ORTHO05D001347 2.6e-09 66.2 63 54.0
Manes.03G089100 Manihot esculenta HOM05D001165 ORTHO05D001347 2.6e-09 66.2 71 46.5
BcaC05g25016 Brassica carinata HOM05D001165 ORTHO05D001347 3.4e-09 65.9 60 53.3
Gohir.A01G183300 Gossypium hirsutum HOM05D001165 ORTHO05D001347 3.4e-09 65.9 62 46.8
THA.LOC104809536 Tarenaya hassleriana HOM05D001165 ORTHO05D001347 4.4e-09 65.5 54 55.6
Atru.chr3.2208 Acer truncatum HOM05D001165 ORTHO05D001347 5.8e-09 65.1 62 46.8
Aa31LG2G9200 Aethionema arabicum HOM05D001165 ORTHO05D001347 5.8e-09 65.1 60 53.3
Gohir.D01G174400 Gossypium hirsutum HOM05D001165 ORTHO05D001347 5.8e-09 65.1 62 46.8
Lalb_Chr09g0321331 Lupinus albus HOM05D001165 ORTHO05D001347 5.8e-09 65.1 59 52.5
Cpa.g.sc27.168 Carica papaya HOM05D001165 ORTHO05D001347 7.6e-09 64.7 53 50.9
CDE05G0912 Ceratophyllum demersum HOM05D001165 ORTHO05D001347 7.6e-09 64.7 62 50.0
Thhalv10006850m.g Eutrema salsugineum HOM05D001165 ORTHO05D001347 7.6e-09 64.7 52 55.8
TPR.G32699 Trifolium pratense HOM05D001165 ORTHO05D001347 7.6e-09 64.7 75 42.7
CDE05G1370 Ceratophyllum demersum HOM05D001165 ORTHO05D001347 9.9e-09 64.3 62 48.4
Ca_24958_v3 Cicer arietinum L. HOM05D001165 ORTHO05D001347 9.9e-09 64.3 59 52.5
Ca_25573_v3 Cicer arietinum L. HOM05D001165 ORTHO05D001347 9.9e-09 64.3 63 49.2
ClCG03G013970 Citrullus lanatus HOM05D001165 ORTHO05D001347 9.9e-09 64.3 62 48.4
Phvul.004G176100 Phaseolus vulgaris HOM05D001165 ORTHO05D001347 9.9e-09 64.3 56 53.6
RcHm_v2.0_Chr4g0444071 Rosa chinensis HOM05D001165 ORTHO05D001347 9.9e-09 64.3 88 43.2
arahy.Tifrunner.gnm1.ann1.IN8D84 Arachis hypogaea HOM05D001165 ORTHO05D001347 1.3e-08 63.9 63 49.2
ECA246G0534 Erigeron canadensis HOM05D001165 ORTHO05D001347 1.3e-08 63.9 55 54.5
Lj2g0012913 Lotus japonicus HOM05D001165 ORTHO05D001347 1.3e-08 63.9 56 51.8
MBI13_g29649_MAGBIO Magnolia biondii HOM05D001165 ORTHO05D001347 1.3e-08 63.9 55 54.5
QL01p010304 Quercus lobata HOM05D001165 ORTHO05D001347 1.3e-08 63.9 63 50.8
CSS0013017 Camellia sinensis var. sinensis HOM05D001165 ORTHO05D001347 1.7e-08 63.5 52 59.6
TPR.G19244 Trifolium pratense HOM05D001165 ORTHO05D001347 1.7e-08 63.5 59 50.8
arahy.Tifrunner.gnm1.ann1.FW39NC Arachis hypogaea HOM05D001165 ORTHO05D001347 2.2e-08 63.2 63 49.2
CsaV3_1G042250 Cucumis sativus L. HOM05D001165 ORTHO05D001347 2.2e-08 63.2 62 50.0
TPR.G25144 Trifolium pratense HOM05D001165 ORTHO05D001347 2.2e-08 63.2 82 43.9
Lsat_1_v5_gn_6_36561 Lactuca sativa HOM05D001165 ORTHO05D001347 2.9e-08 62.8 71 43.7
AUR62001932 Chenopodium quinoa HOM05D001165 ORTHO05D001347 6.4e-08 61.6 55 50.9
MD11G1013200 Malus domestica HOM05D001165 ORTHO05D001347 6.4e-08 61.6 58 48.3
Haze_22993 Corylus avellana HOM05D001165 ORTHO05D001347 8.4e-08 61.2 56 53.6
Lj2g0018357 Lotus japonicus HOM05D001165 ORTHO05D001347 8.4e-08 61.2 58 48.3
Lj5g0010349 Lotus japonicus HOM05D001165 ORTHO05D001347 8.4e-08 61.2 63 49.2
Lj5g0018302 Lotus japonicus HOM05D001165 ORTHO05D001347 8.4e-08 61.2 63 49.2
Lj5g0026814 Lotus japonicus HOM05D001165 ORTHO05D001347 8.4e-08 61.2 63 49.2
Nitab4.5_0004389g0060 Nicotiana tabacum HOM05D001165 ORTHO05D001347 8.4e-08 61.2 56 55.4
MD11G1012800 Malus domestica HOM05D001165 ORTHO05D001347 1.1e-07 60.8 54 50.0
Nitab4.5_0005477g0020 Nicotiana tabacum HOM05D001165 ORTHO05D001347 1.1e-07 60.8 56 51.8
Peaxi162Scf00441g00015 Petunia axillaris HOM05D001165 ORTHO05D001347 1.1e-07 60.8 68 47.1
SEGI_14348 Sequoiadendron giganteum HOM05D001165 ORTHO05D001347 1.1e-07 60.8 60 48.3
Thecc.02G019200 Theobroma cacao HOM05D001165 ORTHO05D001347 1.1e-07 60.8 62 45.2
VMungo0464G1904 Vigna mungo HOM05D001165 ORTHO05D001347 1.1e-07 60.8 56 53.6
vmacro10103 Vaccinium macrocarpon HOM05D001165 ORTHO05D001347 1.4e-07 60.5 64 43.8
ATR0598G105 Amborella trichopoda HOM05D001165 ORTHO05D001347 1.9e-07 60.1 70 44.3
AUR62003878 Chenopodium quinoa HOM05D001165 ORTHO05D001347 1.9e-07 60.1 62 45.2
COL.COLO4_10449 Corchorus olitorius HOM05D001165 ORTHO05D001347 1.9e-07 60.1 55 47.3
COL.COLO4_14287 Corchorus olitorius HOM05D001165 ORTHO05D001347 1.9e-07 60.1 55 49.1
Lj4g0017684 Lotus japonicus HOM05D001165 ORTHO05D001347 1.9e-07 60.1 63 46.0
Lalb_Chr24g0397301 Lupinus albus HOM05D001165 ORTHO05D001347 1.9e-07 60.1 52 55.8
Cfa009624 Carpinus fangiana HOM05D001165 ORTHO05D001347 2.4e-07 59.7 56 51.8
Medtr5g023660 Medicago truncatula HOM05D001165 ORTHO05D001347 2.4e-07 59.7 60 48.3
Medtr6g084890 Medicago truncatula HOM05D001165 ORTHO05D001347 2.4e-07 59.7 60 48.3
CSS0038763 Camellia sinensis var. sinensis HOM05D001165 ORTHO05D001347 3.2e-07 59.3 57 52.6
Carub.0002s2681 Capsella rubella HOM05D001165 ORTHO05D001347 3.2e-07 59.3 55 49.1
Ciclev10014232m.g Citrus clementina HOM05D001165 ORTHO05D001347 3.2e-07 59.3 56 50.0
Rhsim05G0215600 Rhododendron simsii HOM05D001165 ORTHO05D001347 3.2e-07 59.3 61 44.3
Aa31LG2G21870 Aethionema arabicum HOM05D001165 ORTHO05D001347 4.2e-07 58.9 55 49.1
Aqoxy4G01202 Aquilegia oxysepala HOM05D001165 ORTHO05D001347 4.2e-07 58.9 51 54.9
CSS0034027 Camellia sinensis var. sinensis HOM05D001165 ORTHO05D001347 4.2e-07 58.9 58 51.7
COL.COLO4_10748 Corchorus olitorius HOM05D001165 ORTHO05D001347 4.2e-07 58.9 55 45.5
MD03G1011100 Malus domestica HOM05D001165 ORTHO05D001347 4.2e-07 58.9 54 50.0
Nitab4.5_0001620g0010 Nicotiana tabacum HOM05D001165 ORTHO05D001347 4.2e-07 58.9 56 50.0
PGSC0003DMG400004285 Solanum tuberosum HOM05D001165 ORTHO05D001347 4.2e-07 58.9 56 50.0
Aqoxy1G04267 Aquilegia oxysepala HOM05D001165 ORTHO05D001347 5.4e-07 58.5 59 49.2
EL10Ac6g15749 Beta vulgaris HOM05D001165 ORTHO05D001347 5.4e-07 58.5 56 46.4
Medtr5g066780 Medicago truncatula HOM05D001165 ORTHO05D001347 5.4e-07 58.5 55 50.9
RcHm_v2.0_Chr2g0085701 Rosa chinensis HOM05D001165 ORTHO05D001347 5.4e-07 58.5 53 49.1
Solyc12g100330.2 Solanum lycopersicum HOM05D001165 ORTHO05D001347 5.4e-07 58.5 56 50.0
Sopen12g034960 Solanum pennellii HOM05D001165 ORTHO05D001347 5.4e-07 58.5 56 50.0
Medtr7g007090 Medicago truncatula HOM05D001165 ORTHO05D001347 7.1e-07 58.2 58 48.3
RcHm_v2.0_Chr4g0398431 Rosa chinensis HOM05D001165 ORTHO05D001347 7.1e-07 58.2 53 45.3
FAN28G2049 Fragaria x ananassa HOM05D001165 ORTHO05D001347 9.3e-07 57.8 56 44.6
Psat2g130080 Pisum sativum HOM05D001165 ORTHO05D001347 9.3e-07 57.8 82 40.2
CAN.G575.11 Capsicum annuum HOM05D001165 ORTHO05D001347 1.2e-06 57.4 56 48.2
FvH4_1g00970 Fragaria vesca HOM05D001165 ORTHO05D001347 1.2e-06 57.4 55 45.5
PSO135G0763 Papaver somniferum HOM05D001165 ORTHO05D001347 1.2e-06 57.4 71 33.8
PSO384G1883 Papaver somniferum HOM05D001165 ORTHO05D001347 1.2e-06 57.4 71 33.8
PGR119G1059 Punica granatum HOM05D001165 ORTHO05D001347 1.2e-06 57.4 55 47.3
CARHR073750 Cardamine hirsuta HOM05D001165 ORTHO05D001347 1.6e-06 57.0 58 51.7
Dinv13422 Davidia involucrata HOM05D001165 ORTHO05D001347 1.6e-06 57.0 56 48.2
Aqoxy3G02035 Aquilegia oxysepala HOM05D001165 ORTHO05D001347 2.1e-06 56.6 52 50.0
CiPaw.13G171700 Carya illinoinensis HOM05D001165 ORTHO05D001347 2.1e-06 56.6 56 50.0
Hma1.2p1_0840F.1_g226760 Hydrangea macrophylla HOM05D001165 ORTHO05D001347 2.7e-06 56.2 49 57.1
Prupe.6G011600 Prunus persica HOM05D001165 ORTHO05D001347 3.5e-06 55.8 54 50.0
SGA_v2.0_scaffold95G28781 Striga asiatica HOM05D001165 ORTHO05D001347 3.5e-06 55.8 56 48.2
Actinidia06857 Actinidia chinensis HOM05D001165 ORTHO05D001347 4.6e-06 55.5 56 44.6
EL10Ac4g10341 Beta vulgaris HOM05D001165 ORTHO05D001347 4.6e-06 55.5 57 47.4
Cc01_g01020 Coffea canephora HOM05D001165 ORTHO05D001347 4.6e-06 55.5 55 50.9
Sc16g0012010 Simmondsia chinensis HOM05D001165 ORTHO05D001347 4.6e-06 55.5 57 49.1
Dinv15838 Davidia involucrata HOM05D001165 ORTHO05D001347 7.8e-06 54.7 60 45.0
Hma1.2p1_0635F.1_g193170 Hydrangea macrophylla HOM05D001165 ORTHO05D001347 7.8e-06 54.7 62 43.5
Potri.003G215800 Populus trichocarpa HOM05D001165 ORTHO05D001347 7.8e-06 54.7 61 37.7
TPR.G25460 Trifolium pratense HOM05D001165 ORTHO05D001347 7.8e-06 54.7 78 37.2


User provided reference genes

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