Gene: Sopen12g034960

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen12g034960
  • Transcript Identifier Sopen12g034960.1
  • Gene Type Coding gene
  • Location Spenn-ch12 : 83060099-83065930 : positive

Gene Family Information

  • ID HOM05D001165
  • #Genes/#Species 531/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen12g034960.1

Descriptions

  • Description DNA (cytosine-5)-methyltransferase 1 (EC 2.1.1.37) (Chromomethylase 1) (Zea methyltransferase2) (Zmet2) (DNA cytosine methyltransferase MET2a) - Zea mays (Maize), Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | chromomethylase 3 (CMT3) | FUNCTIONS IN: DNA (cytosine-5-)-methyltransferase activity | INVOLVED IN: in 6 processes | LOCATED IN: chromatin, nucleus | EXPRESSED IN: 21 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: DNA methylase, C-5 cytosine-specific , Chromo domain-like , Bromo adjacent homology (BAH) domain , DNA methylase, C-5 cytosine-specific, active site , Chromo domain | BEST Arabidopsis thaliana protein match is: chromomethylase 2
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009294
ISO
PLAZA Integrative OrthologyDNA mediated transformation AT1G80740
GO:0010154
ISO
PLAZA Integrative Orthologyfruit development Solyc12g100330.2
GO:0045814
ISO
PLAZA Integrative Orthologynegative regulation of gene expression, epigenetic AT1G69770
GO:0009836
ISO
PLAZA Integrative Orthologyfruit ripening, climacteric Solyc12g100330.2
GO:0006306
ISO
PLAZA Integrative OrthologyDNA methylation AT1G69770
GO:0006342
ISO
PLAZA Integrative Orthologychromatin silencing AT1G69770
GO:0010425
ISO
PLAZA Integrative OrthologyDNA methylation on cytosine within a CNG sequence AT1G69770
GO:0010216
ISO
PLAZA Integrative Orthologymaintenance of DNA methylation Os10g0104900
GO:0051567
ISO
PLAZA Integrative Orthologyhistone H3-K9 methylation AT1G69770
GO:0010069
ISO
PLAZA Integrative Orthologyzygote asymmetric cytokinesis in embryo sac AT1G69770
GO:0032776
ISO
PLAZA Integrative OrthologyDNA methylation on cytosine Os10g0104900

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003682
IEA
InterProchromatin binding
GO:0008168
IEA
InterPromethyltransferase activity
GO:0003886
ISO
PLAZA Integrative OrthologyDNA (cytosine-5-)-methyltransferase activity Solyc12g100330.2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR029063 S-adenosyl-L-methionine-dependent methyltransferase
IPR016197 Chromo-like domain superfamily
IPR000953 Chromo/chromo shadow domain
IPR001025 Bromo adjacent homology (BAH) domain
IPR043151 Bromo adjacent homology (BAH) domain superfamily
IPR023780 Chromo domain
IPR001525 C-5 cytosine methyltransferase
Mapman id Description
12.5.2.4 Chromatin organisation.DNA methylation.RNA-independent DNA methylation.DNA chromomethylase (CMT)