Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0227400 Rhododendron simsii HOM05D004616 ORTHO05D339556 1.5e-297 1025.4 514 100.0
Actinidia07256 Actinidia chinensis HOM05D004616 ORTHO05D005860 6.2e-17 93.2 51 80.4
vmacro03327 Vaccinium macrocarpon HOM05D004616 ORTHO05D005860 1.2e-15 89.0 51 80.4
Rhsim13G0113400 Rhododendron simsii HOM05D004616 ORTHO05D005860 3.4e-15 87.4 51 78.4
Cpa.g.sc195.20 Carica papaya HOM05D004616 ORTHO05D005860 4.5e-15 87.0 65 63.1
Nn6g34808 Nelumbo nucifera HOM05D004616 ORTHO05D005860 5.8e-15 86.7 65 60.0
Dinv22821 Davidia involucrata HOM05D004616 ORTHO05D005860 1.3e-14 85.5 51 78.4
Lj3g0000295 Lotus japonicus HOM05D004616 ORTHO05D005860 1.3e-14 85.5 65 66.2
COL.COLO4_34009 Corchorus olitorius HOM05D004616 ORTHO05D005860 1.7e-14 85.1 51 74.5
Duzib168G0483 Durio zibethinus HOM05D004616 ORTHO05D005860 1.7e-14 85.1 51 74.5
Gohir.A09G096900 Gossypium hirsutum HOM05D004616 ORTHO05D005860 1.7e-14 85.1 51 74.5
Gohir.D09G096700 Gossypium hirsutum HOM05D004616 ORTHO05D005860 1.7e-14 85.1 51 74.5
Gorai.006G113400 Gossypium raimondii HOM05D004616 ORTHO05D005860 1.7e-14 85.1 51 74.5
Manes.04G001500 Manihot esculenta HOM05D004616 ORTHO05D005860 1.7e-14 85.1 51 76.5
Sc06g0008700 Simmondsia chinensis HOM05D004616 ORTHO05D005860 1.7e-14 85.1 51 74.5
Thecc.09G279200 Theobroma cacao HOM05D004616 ORTHO05D005860 1.7e-14 85.1 51 74.5
Actinidia24228 Actinidia chinensis HOM05D004616 ORTHO05D005860 2.2e-14 84.7 51 74.5
Sabra04G0133400 Salix brachista HOM05D004616 ORTHO05D005860 2.2e-14 84.7 51 76.5
GSVIVG01036084001 Vitis vinifera HOM05D004616 ORTHO05D005860 2.2e-14 84.7 51 74.5
Sopen06g030640 Solanum pennellii HOM05D004616 ORTHO05D005860 2.9e-14 84.3 51 76.5
Ah.08g223540 Amaranthus hybridus HOM05D004616 ORTHO05D005860 3.8e-14 84.0 51 74.5
Haze_23351 Corylus avellana HOM05D004616 ORTHO05D005860 3.8e-14 84.0 51 72.5
Lj2A968G32 Lonicera japonica HOM05D004616 ORTHO05D005860 3.8e-14 84.0 51 76.5
MD11G1168400 Malus domestica HOM05D004616 ORTHO05D005860 3.8e-14 84.0 51 72.5
Solyc06g074220.3 Solanum lycopersicum HOM05D004616 ORTHO05D005860 3.8e-14 84.0 51 74.5
Dinv08937 Davidia involucrata HOM05D004616 ORTHO05D005860 4.9e-14 83.6 75 61.3
MD03G1149500 Malus domestica HOM05D004616 ORTHO05D005860 4.9e-14 83.6 51 72.5
Prupe.6G135500 Prunus persica HOM05D004616 ORTHO05D005860 4.9e-14 83.6 51 72.5
QL01p011880 Quercus lobata HOM05D004616 ORTHO05D005860 4.9e-14 83.6 51 72.5
Sp4g10140 Schrenkiella parvula HOM05D004616 ORTHO05D005860 4.9e-14 83.6 57 66.7
Hund18773 Selenicereus undatus HOM05D004616 ORTHO05D005860 4.9e-14 83.6 51 74.5
CANSAT54G1125 Cannabis sativa HOM05D004616 ORTHO05D005860 6.5e-14 83.2 51 70.6
PGSC0003DMG400005888 Solanum tuberosum HOM05D004616 ORTHO05D005860 6.5e-14 83.2 51 74.5
CSS0008379 Camellia sinensis var. sinensis HOM05D004616 ORTHO05D005860 8.4e-14 82.8 51 72.5
AUR62001524 Chenopodium quinoa HOM05D004616 ORTHO05D005860 8.4e-14 82.8 91 52.7
Potri.009G160100 Populus trichocarpa HOM05D004616 ORTHO05D005860 8.4e-14 82.8 51 74.5
FvH4_3g25610 Fragaria vesca HOM05D004616 ORTHO05D005860 1.1e-13 82.4 51 72.5
FAN11G2307 Fragaria x ananassa HOM05D004616 ORTHO05D005860 1.1e-13 82.4 51 72.5
FAN21G3247 Fragaria x ananassa HOM05D004616 ORTHO05D005860 1.1e-13 82.4 51 72.5
Glyma.11G181500 Glycine max HOM05D004616 ORTHO05D005860 1.1e-13 82.4 51 74.5
HanXRQChr13g0397601 Helianthus annuus HOM05D004616 ORTHO05D005860 1.1e-13 82.4 65 60.0
Nitab4.5_0008177g0040 Nicotiana tabacum HOM05D004616 ORTHO05D005860 1.1e-13 82.4 51 70.6
Potri.004G196800 Populus trichocarpa HOM05D004616 ORTHO05D005860 1.1e-13 82.4 51 74.5
RcHm_v2.0_Chr5g0045751 Rosa chinensis HOM05D004616 ORTHO05D005860 1.1e-13 82.4 51 72.5
Solyc11g068660.2 Solanum lycopersicum HOM05D004616 ORTHO05D005860 1.1e-13 82.4 51 70.6
Sopen11g027380 Solanum pennellii HOM05D004616 ORTHO05D005860 1.1e-13 82.4 51 70.6
TWI79G0721 Tripterygium wilfordii HOM05D004616 ORTHO05D005860 1.1e-13 82.4 51 74.5
VMungo1127G2084 Vigna mungo HOM05D004616 ORTHO05D005860 1.1e-13 82.4 51 74.5
BcaC02g10868 Brassica carinata HOM05D004616 ORTHO05D005860 1.4e-13 82.0 57 64.9
A07p18140 Brassica napus HOM05D004616 ORTHO05D005860 1.4e-13 82.0 57 64.9
C04p24240 Brassica napus HOM05D004616 ORTHO05D005860 1.4e-13 82.0 57 64.9
BolC4t23922H Brassica oleracea HOM05D004616 ORTHO05D005860 1.4e-13 82.0 57 64.9
BraA07t29532Z Brassica rapa HOM05D004616 ORTHO05D005860 1.4e-13 82.0 57 64.9
Cfa009990 Carpinus fangiana HOM05D004616 ORTHO05D005860 1.4e-13 82.0 51 72.5
FAN16G2710 Fragaria x ananassa HOM05D004616 ORTHO05D005860 1.4e-13 82.0 51 72.5
Glyma.12G091600 Glycine max HOM05D004616 ORTHO05D005860 1.4e-13 82.0 51 72.5
Lalb_Chr01g0004921 Lupinus albus HOM05D004616 ORTHO05D005860 1.4e-13 82.0 53 73.6
Nitab4.5_0000937g0090 Nicotiana tabacum HOM05D004616 ORTHO05D005860 1.4e-13 82.0 51 72.5
Nitab4.5_0005472g0060 Nicotiana tabacum HOM05D004616 ORTHO05D005860 1.4e-13 82.0 51 72.5
Hund20933 Selenicereus undatus HOM05D004616 ORTHO05D005860 1.4e-13 82.0 51 72.5
BcaB02g10086 Brassica carinata HOM05D004616 ORTHO05D005860 1.9e-13 81.6 51 70.6
CiPaw.14G098200 Carya illinoinensis HOM05D004616 ORTHO05D005860 1.9e-13 81.6 51 72.5
PSO339G4556 Papaver somniferum HOM05D004616 ORTHO05D005860 1.9e-13 81.6 51 70.6
PSO801G0782 Papaver somniferum HOM05D004616 ORTHO05D005860 1.9e-13 81.6 51 70.6
Sabra09G0125300 Salix brachista HOM05D004616 ORTHO05D005860 1.9e-13 81.6 62 62.9
PGSC0003DMG400026348 Solanum tuberosum HOM05D004616 ORTHO05D005860 1.9e-13 81.6 51 70.6
TWI75G1519 Tripterygium wilfordii HOM05D004616 ORTHO05D005860 1.9e-13 81.6 51 74.5
Aqoxy2G01054 Aquilegia oxysepala HOM05D004616 ORTHO05D005860 2.5e-13 81.3 51 68.6
CSS0010321 Camellia sinensis var. sinensis HOM05D004616 ORTHO05D005860 2.5e-13 81.3 51 70.6
CSS0027671 Camellia sinensis var. sinensis HOM05D004616 ORTHO05D005860 2.5e-13 81.3 51 70.6
FAN25G2333 Fragaria x ananassa HOM05D004616 ORTHO05D005860 2.5e-13 81.3 51 70.6
FAN25G2905 Fragaria x ananassa HOM05D004616 ORTHO05D005860 2.5e-13 81.3 51 70.6
TAR633G1321 Trochodendron aralioides HOM05D004616 ORTHO05D005860 2.5e-13 81.3 51 72.5
EL10Ac7g16331 Beta vulgaris HOM05D004616 ORTHO05D005860 3.2e-13 80.9 51 70.6
BcaB01g03068 Brassica carinata HOM05D004616 ORTHO05D005860 3.2e-13 80.9 57 63.2
Ciclev10030048m.g Citrus clementina HOM05D004616 ORTHO05D005860 3.2e-13 80.9 51 74.5
Sed0016133 Sechium edule HOM05D004616 ORTHO05D005860 3.2e-13 80.9 52 69.2
TAR623G1480 Trochodendron aralioides HOM05D004616 ORTHO05D005860 3.2e-13 80.9 51 72.5
Aa31LG5G8750 Aethionema arabicum HOM05D004616 ORTHO05D005860 4.2e-13 80.5 51 68.6
AT2G27350 Arabidopsis thaliana HOM05D004616 ORTHO05D005860 4.2e-13 80.5 51 68.6
CDE06G1573 Ceratophyllum demersum HOM05D004616 ORTHO05D005860 4.2e-13 80.5 75 58.7
CDE08G0566 Ceratophyllum demersum HOM05D004616 ORTHO05D005860 4.2e-13 80.5 51 70.6
Thhalv10001965m.g Eutrema salsugineum HOM05D004616 ORTHO05D005860 4.2e-13 80.5 57 63.2
Lj3g0004055 Lotus japonicus HOM05D004616 ORTHO05D005860 4.2e-13 80.5 51 72.5
CAN.G919.39 Capsicum annuum HOM05D004616 ORTHO05D005860 7.1e-13 79.7 49 75.5
Cc01_g08850 Coffea canephora HOM05D004616 ORTHO05D005860 7.1e-13 79.7 51 72.5
DCAR_012213 Daucus carota HOM05D004616 ORTHO05D005860 7.1e-13 79.7 75 58.7
Duzib150G0968 Durio zibethinus HOM05D004616 ORTHO05D005860 7.1e-13 79.7 51 72.5
Eucgr.B03827 Eucalyptus grandis HOM05D004616 ORTHO05D005860 7.1e-13 79.7 51 72.5
AL4G21290 Arabidopsis lyrata HOM05D004616 ORTHO05D005860 9.3e-13 79.3 51 68.6
MELO3C004671.2 Cucumis melo HOM05D004616 ORTHO05D005860 9.3e-13 79.3 52 67.3
Lsat_1_v5_gn_6_38401 Lactuca sativa HOM05D004616 ORTHO05D005860 9.3e-13 79.3 51 70.6
THA.LOC104826435 Tarenaya hassleriana HOM05D004616 ORTHO05D005860 9.3e-13 79.3 47 72.3
Atru.chr3.3173 Acer truncatum HOM05D004616 ORTHO05D005860 1.2e-12 79.0 49 73.5
CAN.G745.9 Capsicum annuum HOM05D004616 ORTHO05D005860 1.2e-12 79.0 51 68.6
ECA233G2149 Erigeron canadensis HOM05D004616 ORTHO05D005860 1.2e-12 79.0 51 68.6
Gorai.001G123000 Gossypium raimondii HOM05D004616 ORTHO05D005860 1.2e-12 79.0 51 70.6
Peaxi162Scf00224g00117 Petunia axillaris HOM05D004616 ORTHO05D005860 1.2e-12 79.0 51 66.7
Phvul.011G096000 Phaseolus vulgaris HOM05D004616 ORTHO05D005860 1.2e-12 79.0 51 70.6
THA.LOC104800519 Tarenaya hassleriana HOM05D004616 ORTHO05D005860 1.2e-12 79.0 51 68.6
Carub.0004s0797 Capsella rubella HOM05D004616 ORTHO05D005860 1.6e-12 78.6 51 66.7
CsaV3_1G015050 Cucumis sativus L. HOM05D004616 ORTHO05D005860 1.6e-12 78.6 52 67.3
PGR102G3030 Punica granatum HOM05D004616 ORTHO05D005860 1.6e-12 78.6 75 57.3
Sc12g0004600 Simmondsia chinensis HOM05D004616 ORTHO05D005860 1.6e-12 78.6 51 70.6
Sc12g0004630 Simmondsia chinensis HOM05D004616 ORTHO05D005860 1.6e-12 78.6 51 70.6
Ca_01648_v3 Cicer arietinum L. HOM05D004616 ORTHO05D005860 2.1e-12 78.2 49 77.6
HanXRQChr14g0438001 Helianthus annuus HOM05D004616 ORTHO05D005860 2.1e-12 78.2 51 70.6
CARHR119940 Cardamine hirsuta HOM05D004616 ORTHO05D005860 3.5e-12 77.4 51 66.7
BraA04t17661Z Brassica rapa HOM05D004616 ORTHO05D005860 4.6e-12 77.0 51 64.7
Gohir.A07G111000 Gossypium hirsutum HOM05D004616 ORTHO05D005860 6.0e-12 76.6 51 68.6
BcaB06g28144 Brassica carinata HOM05D004616 ORTHO05D005860 7.9e-12 76.3 51 64.7
A04p20900 Brassica napus HOM05D004616 ORTHO05D005860 7.9e-12 76.3 51 64.7
C04p56710 Brassica napus HOM05D004616 ORTHO05D005860 7.9e-12 76.3 51 64.7
BolC4t27203H Brassica oleracea HOM05D004616 ORTHO05D005860 7.9e-12 76.3 51 64.7
Medtr2g086780 Medicago truncatula HOM05D004616 ORTHO05D005860 7.9e-12 76.3 49 75.5
TPR.G4527 Trifolium pratense HOM05D004616 ORTHO05D005860 1.0e-11 75.9 49 75.5
arahy.Tifrunner.gnm1.ann1.38CPMH Arachis hypogaea HOM05D004616 ORTHO05D005860 1.3e-11 75.5 47 72.3
SGA_v2.0_scaffold100G29603 Striga asiatica HOM05D004616 ORTHO05D005860 1.3e-11 75.5 51 66.7
HPP92_001102 Vanilla planifolia HOM05D004616 ORTHO05D005860 1.3e-11 75.5 46 71.7
arahy.Tifrunner.gnm1.ann1.TN2AAQ Arachis hypogaea HOM05D004616 ORTHO05D005860 1.8e-11 75.1 47 72.3
unitig_899.g14957 Utricularia gibba HOM05D004616 ORTHO05D005860 1.8e-11 75.1 51 64.7
Oeu031468.1 Olea europaea HOM05D004616 ORTHO05D005860 2.3e-11 74.7 47 70.2
MSTRG.18768 Avicennia marina HOM05D004616 ORTHO05D005860 3.0e-11 74.3 51 68.6
ATR0820G275 Amborella trichopoda HOM05D004616 ORTHO05D005860 6.7e-11 73.2 51 62.7
Mapoly0015s0108 Marchantia polymorpha HOM05D004616 ORTHO05D005860 1.1e-10 72.4 51 62.7
Psat5g257760 Pisum sativum HOM05D004616 ORTHO05D005860 1.1e-10 72.4 49 71.4
Peaxi162Scf00091g00076 Petunia axillaris HOM05D004616 ORTHO05D005860 1.9e-10 71.6 44 70.5
SEGI_03435 Sequoiadendron giganteum HOM05D004616 ORTHO05D005860 1.9e-10 71.6 51 62.7
Zm00001eb421980 Zea mays HOM05D004616 ORTHO05D005860 1.9e-10 71.6 51 58.8
Psat5g173040 Pisum sativum HOM05D004616 ORTHO05D005860 2.5e-10 71.2 49 69.4
AagrBONN_evm.TU.Sc2ySwM_344.3429 Anthoceros agrestis HOM05D004616 ORTHO05D005860 3.3e-10 70.9 51 62.7
Zm00001eb083750 Zea mays HOM05D004616 ORTHO05D005860 4.3e-10 70.5 51 58.8
Gohir.D07G114800 Gossypium hirsutum HOM05D004616 ORTHO05D005860 1.3e-09 68.9 38 81.6
Os04g0414100 Oryza sativa ssp. japonica HOM05D004616 ORTHO05D005860 1.6e-09 68.6 51 56.9
SMO361G0078 Selaginella moellendorffii HOM05D004616 ORTHO05D005860 1.6e-09 68.6 51 60.8
Pp3c7_5530 Physcomitrium patens HOM05D004616 ORTHO05D005860 4.8e-09 67.0 51 58.8
SGA_v2.0_scaffold22G09840 Striga asiatica HOM05D004616 ORTHO05D005860 4.8e-09 67.0 38 76.3
AUR62020259 Chenopodium quinoa HOM05D004616 ORTHO05D005860 2.6e-07 61.2 35 80.0
Lsat_1_v5_gn_8_23480 Lactuca sativa HOM05D004616 ORTHO05D005860 5.9e-07 60.1 65 46.2
Nitab4.5_0000731g0060 Nicotiana tabacum HOM05D004616 ORTHO05D005860 5.0e-06 57.0 32 75.0


User provided reference genes

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