Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0151500 Rhododendron simsii HOM05D000227 ORTHO05D339511 3.2e-50 201.4 102 100.0
Prupe.5G079300 Prunus persica HOM05D000227 ORTHO05D004136 1.1e-08 63.5 77 50.6
Cpa.g.sc29.93 Carica papaya HOM05D000227 ORTHO05D004136 1.4e-08 63.2 78 50.0
Rhsim09G0193000 Rhododendron simsii HOM05D000227 ORTHO05D004136 1.4e-08 63.2 52 65.4
MD04G1079800 Malus domestica HOM05D000227 ORTHO05D004136 2.3e-08 62.4 77 50.6
RcHm_v2.0_Chr7g0201611 Rosa chinensis HOM05D000227 ORTHO05D004136 2.3e-08 62.4 76 50.0
Ah.07g208170 Amaranthus hybridus HOM05D000227 ORTHO05D004136 3.1e-08 62.0 52 63.5
AUR62016114 Chenopodium quinoa HOM05D000227 ORTHO05D004136 3.1e-08 62.0 52 63.5
AUR62035060 Chenopodium quinoa HOM05D000227 ORTHO05D004136 3.1e-08 62.0 52 63.5
Lsat_1_v5_gn_8_9421 Lactuca sativa HOM05D000227 ORTHO05D004136 4.0e-08 61.6 76 50.0
Rhsim03G0170800 Rhododendron simsii HOM05D000922 ORTHO05D004136 4.0e-08 61.6 77 49.4
EL10Ac3g05804 Beta vulgaris HOM05D000227 ORTHO05D004136 5.2e-08 61.2 52 63.5
DCAR_009425 Daucus carota HOM05D000227 ORTHO05D004136 5.2e-08 61.2 76 50.0
FvH4_5g00650 Fragaria vesca HOM05D000227 ORTHO05D004136 5.2e-08 61.2 52 63.5
FAN04G0173 Fragaria x ananassa HOM05D000227 ORTHO05D004136 5.2e-08 61.2 52 63.5
FAN08G0403 Fragaria x ananassa HOM05D000227 ORTHO05D004136 5.2e-08 61.2 52 63.5
FAN13G2301 Fragaria x ananassa HOM05D000227 ORTHO05D004136 5.2e-08 61.2 52 63.5
FAN18G1696 Fragaria x ananassa HOM05D000227 ORTHO05D004136 5.2e-08 61.2 52 63.5
MD06G1074600 Malus domestica HOM05D000227 ORTHO05D004136 5.2e-08 61.2 66 54.5
TPR.G19687 Trifolium pratense HOM05D000227 ORTHO05D004136 5.2e-08 61.2 52 63.5
Atru.chr9.1429 Acer truncatum HOM05D000227 ORTHO05D004136 6.8e-08 60.8 78 48.7
Actinidia25031 Actinidia chinensis HOM05D000227 ORTHO05D004136 6.8e-08 60.8 77 51.9
Dinv28541 Davidia involucrata HOM05D000227 ORTHO05D004136 6.8e-08 60.8 52 63.5
Oeu028176.1 Olea europaea HOM05D000227 ORTHO05D004136 6.8e-08 60.8 52 63.5
Peaxi162Scf01372g00023 Petunia axillaris HOM05D000227 ORTHO05D004136 6.8e-08 60.8 52 63.5
Solyc03g083520.4 Solanum lycopersicum HOM05D000227 ORTHO05D004136 6.8e-08 60.8 52 63.5
Sopen03g023330 Solanum pennellii HOM05D000227 ORTHO05D004136 6.8e-08 60.8 52 63.5
DCAR_020203 Daucus carota HOM05D000227 ORTHO05D004136 8.9e-08 60.5 52 63.5
CAN.G152.23 Capsicum annuum HOM05D000227 ORTHO05D004136 1.2e-07 60.1 52 61.5
Potri.001G117900 Populus trichocarpa HOM05D000227 ORTHO05D004136 1.2e-07 60.1 78 48.7
Potri.003G115000 Populus trichocarpa HOM05D000227 ORTHO05D004136 1.2e-07 60.1 78 48.7
Gohir.A12G220800 Gossypium hirsutum HOM05D000227 ORTHO05D004136 1.5e-07 59.7 69 52.2
Oeu021719.1 Olea europaea HOM05D000227 ORTHO05D004136 1.5e-07 59.7 52 61.5
Sc13g0007760 Simmondsia chinensis HOM05D000227 ORTHO05D004136 1.5e-07 59.7 52 61.5
Solyc11g072270.3 Solanum lycopersicum HOM05D000227 ORTHO05D004136 1.5e-07 59.7 52 61.5
Sopen11g029940 Solanum pennellii HOM05D000227 ORTHO05D004136 1.5e-07 59.7 52 61.5
PGSC0003DMG400027382 Solanum tuberosum HOM05D000227 ORTHO05D004136 1.5e-07 59.7 52 61.5
CiPaw.11G147700 Carya illinoinensis HOM05D000227 ORTHO05D004136 2.0e-07 59.3 78 47.4
COL.COLO4_23883 Corchorus olitorius HOM05D000227 ORTHO05D004136 2.0e-07 59.3 77 48.1
Dinv22973 Davidia involucrata HOM05D000227 ORTHO05D004136 2.0e-07 59.3 66 54.5
Duzib205G1358 Durio zibethinus HOM05D000227 ORTHO05D004136 2.0e-07 59.3 77 48.1
Hma1.2p1_0099F.1_g049010 Hydrangea macrophylla HOM05D000227 ORTHO05D004136 2.0e-07 59.3 76 48.7
MD03G1151100 Malus domestica HOM05D000227 ORTHO05D004136 2.0e-07 59.3 66 53.0
Medtr5g011850 Medicago truncatula HOM05D000227 ORTHO05D004136 2.0e-07 59.3 52 61.5
PGR031G1980 Punica granatum HOM05D000227 ORTHO05D004136 2.0e-07 59.3 78 50.0
TWI60G1653 Tripterygium wilfordii HOM05D000227 ORTHO05D004136 2.0e-07 59.3 77 48.1
Actinidia13559 Actinidia chinensis HOM05D000227 ORTHO05D004136 2.6e-07 58.9 66 54.5
MSTRG.8419 Avicennia marina HOM05D000227 ORTHO05D004136 2.6e-07 58.9 65 53.8
CSS0026594 Camellia sinensis var. sinensis HOM05D000227 ORTHO05D004136 2.6e-07 58.9 66 53.0
Cfa012801 Carpinus fangiana HOM05D000227 ORTHO05D004136 2.6e-07 58.9 78 47.4
Ca_06692_v3 Cicer arietinum L. HOM05D000227 ORTHO05D004136 2.6e-07 58.9 52 61.5
Haze_08612 Corylus avellana HOM05D000227 ORTHO05D004136 2.6e-07 58.9 78 47.4
ECA233G0919 Erigeron canadensis HOM05D000227 ORTHO05D004136 2.6e-07 58.9 56 57.1
Migut.F00440 Erythranthe guttata HOM05D000227 ORTHO05D004136 2.6e-07 58.9 52 61.5
Gohir.D12G223100 Gossypium hirsutum HOM05D000227 ORTHO05D004136 2.6e-07 58.9 77 48.1
Gorai.008G239400 Gossypium raimondii HOM05D000227 ORTHO05D004136 2.6e-07 58.9 77 48.1
HanXRQChr05g0142361 Helianthus annuus HOM05D000227 ORTHO05D004136 2.6e-07 58.9 56 57.1
Lsat_1_v5_gn_2_129361 Lactuca sativa HOM05D000227 ORTHO05D004136 2.6e-07 58.9 52 61.5
Lj2g0015453 Lotus japonicus HOM05D000227 ORTHO05D004136 2.6e-07 58.9 52 61.5
Lalb_Chr05g0214631 Lupinus albus HOM05D000227 ORTHO05D004136 2.6e-07 58.9 52 61.5
Psat2g179360 Pisum sativum HOM05D000227 ORTHO05D004136 2.6e-07 58.9 52 61.5
QL12p014949 Quercus lobata HOM05D000227 ORTHO05D004136 2.6e-07 58.9 78 47.4
SalBow4G1771 Salvia bowleyana HOM05D000227 ORTHO05D004136 2.6e-07 58.9 52 61.5
SalBow4G2666 Salvia bowleyana HOM05D000227 ORTHO05D004136 2.6e-07 58.9 52 61.5
SGA_v2.0_scaffold2G01163 Striga asiatica HOM05D000922 ORTHO05D004136 2.6e-07 58.9 52 61.5
SGA_v2.0_scaffold486G52385 Striga asiatica HOM05D000922 ORTHO05D001851 2.6e-07 58.9 52 61.5
Thecc.03G261600 Theobroma cacao HOM05D000227 ORTHO05D004136 2.6e-07 58.9 77 48.1
TWI15G1106 Tripterygium wilfordii HOM05D000227 ORTHO05D004136 2.6e-07 58.9 52 61.5
TWI81G0057 Tripterygium wilfordii HOM05D000227 ORTHO05D004136 2.6e-07 58.9 52 61.5
unitig_37.g11934 Utricularia gibba HOM05D000227 ORTHO05D004136 2.6e-07 58.9 52 61.5
unitig_92.g28268 Utricularia gibba HOM05D000227 ORTHO05D004136 2.6e-07 58.9 66 54.5
Cc02_g03980 Coffea canephora HOM05D000227 ORTHO05D004136 3.4e-07 58.5 52 61.5
Duzib084G0929 Durio zibethinus HOM05D000227 ORTHO05D004136 3.4e-07 58.5 77 48.1
Hma1.2p1_0654F.1_g196440 Hydrangea macrophylla HOM05D000227 ORTHO05D004136 3.4e-07 58.5 52 61.5
Lalb_Chr09g0324501 Lupinus albus HOM05D000227 ORTHO05D004136 3.4e-07 58.5 52 61.5
Lalb_Chr16g0379781 Lupinus albus HOM05D000227 ORTHO05D004136 3.4e-07 58.5 52 61.5
Oeu042581.1 Olea europaea HOM05D000227 ORTHO05D004136 3.4e-07 58.5 77 46.8
Aa31LG6G4670 Aethionema arabicum HOM05D000227 ORTHO05D004136 4.4e-07 58.2 32 84.4
CANSAT21G2084 Cannabis sativa HOM05D000227 ORTHO05D004136 4.4e-07 58.2 77 46.8
Manes.02G033700 Manihot esculenta HOM05D000227 ORTHO05D004136 4.4e-07 58.2 52 61.5
MSTRG.27179 Avicennia marina HOM05D000227 ORTHO05D004136 5.8e-07 57.8 59 55.9
HanXRQChr06g0176651 Helianthus annuus HOM05D000227 ORTHO05D004136 5.8e-07 57.8 32 84.4
Nitab4.5_0018910g0010 Nicotiana tabacum HOM05D000227 ORTHO05D004136 5.8e-07 57.8 52 61.5
Phvul.002G060300 Phaseolus vulgaris HOM05D000227 ORTHO05D004136 5.8e-07 57.8 52 59.6
VMungo0331G1393 Vigna mungo HOM05D000227 ORTHO05D004136 5.8e-07 57.8 52 59.6
CiPaw.12G105200 Carya illinoinensis HOM05D000227 ORTHO05D004136 7.5e-07 57.4 78 46.2
ClCG10G003120 Citrullus lanatus HOM05D000227 ORTHO05D004136 7.5e-07 57.4 52 59.6
MELO3C013982.2 Cucumis melo HOM05D000227 ORTHO05D004136 7.5e-07 57.4 52 59.6
CsaV3_3G003160 Cucumis sativus L. HOM05D000227 ORTHO05D004136 7.5e-07 57.4 52 59.6
Glyma.01G211700 Glycine max HOM05D000227 ORTHO05D004136 7.5e-07 57.4 77 46.8
Glyma.11G030100 Glycine max HOM05D000227 ORTHO05D004136 7.5e-07 57.4 52 59.6
Lj8C38T4 Lonicera japonica HOM05D000227 ORTHO05D004136 7.5e-07 57.4 57 52.6
Nitab4.5_0000205g0080 Nicotiana tabacum HOM05D000227 ORTHO05D004136 7.5e-07 57.4 52 61.5
Nitab4.5_0000205g0090 Nicotiana tabacum HOM05D000227 ORTHO05D004136 7.5e-07 57.4 52 61.5
Nitab4.5_0000205g0140 Nicotiana tabacum HOM05D000227 ORTHO05D004136 7.5e-07 57.4 52 61.5
Nitab4.5_0000262g0200 Nicotiana tabacum HOM05D000227 ORTHO05D004136 7.5e-07 57.4 52 61.5
Nitab4.5_0003732g0030 Nicotiana tabacum HOM05D000227 ORTHO05D004136 7.5e-07 57.4 52 61.5
Peaxi162Scf00234g00074 Petunia axillaris HOM05D000227 ORTHO05D004136 7.5e-07 57.4 52 61.5
Sed0001382 Sechium edule HOM05D000227 ORTHO05D004136 7.5e-07 57.4 52 59.6
Hund11798 Selenicereus undatus HOM05D000227 ORTHO05D004136 7.5e-07 57.4 32 81.2
BcaC07g41706 Brassica carinata HOM05D000227 ORTHO05D004136 9.8e-07 57.0 32 81.2
A09p63910 Brassica napus HOM05D000227 ORTHO05D004136 9.8e-07 57.0 32 81.2
C08p47450 Brassica napus HOM05D000227 ORTHO05D004136 9.8e-07 57.0 32 81.2
BolC8t52285H Brassica oleracea HOM05D000227 ORTHO05D004136 9.8e-07 57.0 32 81.2
BraA09t41739Z Brassica rapa HOM05D000227 ORTHO05D004136 9.8e-07 57.0 32 81.2
Eucgr.D01990 Eucalyptus grandis HOM05D000227 ORTHO05D004136 9.8e-07 57.0 78 46.2
HanXRQChr08g0223571 Helianthus annuus HOM05D000227 ORTHO05D004136 9.8e-07 57.0 56 55.4
HPP92_014609 Vanilla planifolia HOM05D000227 ORTHO05D004136 9.8e-07 57.0 52 59.6
GSVIVG01004914001 Vitis vinifera HOM05D000227 ORTHO05D004136 9.8e-07 57.0 66 50.0
Aqoxy7G00653 Aquilegia oxysepala HOM05D000227 ORTHO05D004136 1.3e-06 56.6 52 59.6
CSS0025958 Camellia sinensis var. sinensis HOM05D000227 ORTHO05D004136 1.3e-06 56.6 66 50.0
TAR375G0935 Trochodendron aralioides HOM05D000227 ORTHO05D004136 1.3e-06 56.6 66 50.0
AL1G23640 Arabidopsis lyrata HOM05D000227 ORTHO05D004136 1.7e-06 56.2 32 81.2
AT1G12310 Arabidopsis thaliana HOM05D000227 ORTHO05D004136 1.7e-06 56.2 32 81.2
BcaB07g31811 Brassica carinata HOM05D000227 ORTHO05D004136 1.7e-06 56.2 32 81.2
BcaC05g25213 Brassica carinata HOM05D000227 ORTHO05D004136 1.7e-06 56.2 32 81.2
A06p09280 Brassica napus HOM05D000227 ORTHO05D004136 1.7e-06 56.2 32 81.2
A08p32900 Brassica napus HOM05D000227 ORTHO05D004136 1.7e-06 56.2 32 81.2
C05p10840 Brassica napus HOM05D000227 ORTHO05D004136 1.7e-06 56.2 32 81.2
C08p15360 Brassica napus HOM05D000227 ORTHO05D004136 1.7e-06 56.2 32 81.2
BolC5t29829H Brassica oleracea HOM05D000227 ORTHO05D004136 1.7e-06 56.2 32 81.2
BolC8t49164H Brassica oleracea HOM05D000227 ORTHO05D004136 1.7e-06 56.2 32 81.2
BraA06t24114Z Brassica rapa HOM05D000227 ORTHO05D004136 1.7e-06 56.2 32 81.2
BraA08t35212Z Brassica rapa HOM05D000227 ORTHO05D004136 1.7e-06 56.2 32 81.2
Carub.0001s1198 Capsella rubella HOM05D000227 ORTHO05D004136 1.7e-06 56.2 32 81.2
CARHR012610 Cardamine hirsuta HOM05D000227 ORTHO05D004136 1.7e-06 56.2 32 81.2
CARHR229630 Cardamine hirsuta HOM05D000227 ORTHO05D004136 1.7e-06 56.2 32 81.2
Duzib068G1435 Durio zibethinus HOM05D000227 ORTHO05D004136 1.7e-06 56.2 77 48.1
Migut.F01173 Erythranthe guttata HOM05D000227 ORTHO05D004136 1.7e-06 56.2 77 45.5
Phvul.003G214700 Phaseolus vulgaris HOM05D000227 ORTHO05D004136 1.7e-06 56.2 52 57.7
THA.LOC104823556 Tarenaya hassleriana HOM05D000227 ORTHO05D004136 1.7e-06 56.2 32 81.2
Gohir.D09G189300 Gossypium hirsutum HOM05D000227 ORTHO05D004136 2.2e-06 55.8 32 75.0
Gorai.006G211900 Gossypium raimondii HOM05D000227 ORTHO05D004136 2.2e-06 55.8 32 75.0
HanXRQChr14g0461701 Helianthus annuus HOM05D000227 ORTHO05D004136 2.2e-06 55.8 32 81.2
PSO478G4245 Papaver somniferum HOM05D000227 ORTHO05D004136 2.2e-06 55.8 66 51.5
PSO782G5533 Papaver somniferum HOM05D000227 ORTHO05D004136 2.2e-06 55.8 66 51.5
Nn4g26374 Nelumbo nucifera HOM05D000227 ORTHO05D004136 2.9e-06 55.5 66 50.0
Thhalv10009022m.g Eutrema salsugineum HOM05D000227 ORTHO05D004136 3.7e-06 55.1 32 78.1
MBI12_g31647_MAGBIO Magnolia biondii HOM05D000227 ORTHO05D004136 3.7e-06 55.1 49 61.2
MBI12_g40165_MAGBIO Magnolia biondii HOM05D000227 ORTHO05D004136 3.7e-06 55.1 49 61.2
Manes.01G073900 Manihot esculenta HOM05D000227 ORTHO05D004136 3.7e-06 55.1 77 45.5
Sp1g10930 Schrenkiella parvula HOM05D000227 ORTHO05D004136 3.7e-06 55.1 32 78.1
THA.LOC104809447 Tarenaya hassleriana HOM05D000227 ORTHO05D004136 3.7e-06 55.1 32 81.2
THA.LOC104818418 Tarenaya hassleriana HOM05D000227 ORTHO05D004136 3.7e-06 55.1 32 78.1
HanXRQChr02g0040591 Helianthus annuus HOM05D000227 ORTHO05D004136 4.9e-06 54.7 56 53.6
Nn1g01259 Nelumbo nucifera HOM05D000227 ORTHO05D004136 4.9e-06 54.7 77 46.8
Zm00001eb173700 Zea mays HOM05D000227 ORTHO05D004136 4.9e-06 54.7 50 54.0
Duzib106G0535 Durio zibethinus HOM05D000227 ORTHO05D004136 6.4e-06 54.3 56 53.6
Gohir.A11G322700 Gossypium hirsutum HOM05D000227 ORTHO05D004136 6.4e-06 54.3 32 71.9
Gohir.D11G341800 Gossypium hirsutum HOM05D000227 ORTHO05D004136 6.4e-06 54.3 32 71.9
Gorai.007G371800 Gossypium raimondii HOM05D000227 ORTHO05D004136 6.4e-06 54.3 32 71.9
Os08g0117400 Oryza sativa ssp. japonica HOM05D000227 ORTHO05D004136 6.4e-06 54.3 32 75.0
Zm00001eb260970 Zea mays HOM05D000227 ORTHO05D004136 6.4e-06 54.3 32 75.0
AL2G12950 Arabidopsis lyrata HOM05D000227 ORTHO05D004136 8.3e-06 53.9 32 75.0
AT1G62820 Arabidopsis thaliana HOM05D000227 ORTHO05D004136 8.3e-06 53.9 32 75.0
Carub.0002s0216 Capsella rubella HOM05D000227 ORTHO05D004136 8.3e-06 53.9 32 75.0
VMungo1215G0317 Vigna mungo HOM05D000227 ORTHO05D004136 8.3e-06 53.9 52 55.8


User provided reference genes

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