Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0228300 Rhododendron simsii HOM05D002725 ORTHO05D338735 3.2e-136 488.4 244 100.0
Rhsim05G0204900 Rhododendron simsii HOM05D006201 ORTHO05D007178 1.4e-75 287.0 205 75.1
Rhsim05G0222300 Rhododendron simsii HOM05D002725 ORTHO05D010009 2.6e-29 133.3 190 48.9
Rhsim05G0225900 Rhododendron simsii HOM05D006201 ORTHO05D007178 1.3e-17 94.4 50 90.0
TPR.G37028 Trifolium pratense HOM05D002725 ORTHO05D003279 1.5e-13 80.9 133 42.9
Rhsim12G0121500 Rhododendron simsii HOM05D002725 ORTHO05D003279 4.9e-12 75.9 159 40.3
Mapoly0042s0037 Marchantia polymorpha HOM05D002725 ORTHO05D003279 1.9e-11 73.9 156 39.1
Peaxi162Scf00301g00128 Petunia axillaris HOM05D002725 ORTHO05D003279 1.9e-11 73.9 156 39.1
TAR629G1020 Trochodendron aralioides HOM05D002725 ORTHO05D003279 2.4e-11 73.6 156 38.5
Rhsim02G0120300 Rhododendron simsii HOM05D002725 ORTHO05D003279 3.2e-11 73.2 123 48.0
Medtr7g037560 Medicago truncatula HOM05D002725 ORTHO05D003279 4.1e-11 72.8 156 37.8
Oeu001743.1 Olea europaea HOM05D002725 ORTHO05D003279 4.1e-11 72.8 156 37.8
GSVIVG01020223001 Vitis vinifera HOM05D002725 ORTHO05D003279 4.1e-11 72.8 156 37.2
MSTRG.7887 Avicennia marina HOM05D002725 ORTHO05D003279 5.4e-11 72.4 156 38.5
ClCG05G025230 Citrullus lanatus HOM05D002725 ORTHO05D003279 5.4e-11 72.4 152 37.5
Nn3g16917 Nelumbo nucifera HOM05D002725 ORTHO05D003279 5.4e-11 72.4 156 38.5
HPP92_018031 Vanilla planifolia HOM05D002725 ORTHO05D003279 5.4e-11 72.4 156 37.8
SalBow2G2496 Salvia bowleyana HOM05D002725 ORTHO05D003279 7.1e-11 72.0 158 39.2
TAR371G0609 Trochodendron aralioides HOM05D002725 ORTHO05D003279 7.1e-11 72.0 156 37.8
Aqoxy3G02968 Aquilegia oxysepala HOM05D002725 ORTHO05D003279 9.2e-11 71.6 152 37.5
TPR.G10571 Trifolium pratense HOM05D002725 ORTHO05D003279 9.2e-11 71.6 156 35.9
vmacro16261 Vaccinium macrocarpon HOM05D002725 ORTHO05D003279 9.2e-11 71.6 159 37.7
CSS0011985 Camellia sinensis var. sinensis HOM05D002725 ORTHO05D003279 1.2e-10 71.2 156 37.2
CSS0030976 Camellia sinensis var. sinensis HOM05D002725 ORTHO05D003279 1.2e-10 71.2 156 37.2
Nitab4.5_0001381g0050 Nicotiana tabacum HOM05D002725 ORTHO05D003279 1.2e-10 71.2 156 38.5
Nitab4.5_0002289g0110 Nicotiana tabacum HOM05D002725 ORTHO05D003279 1.2e-10 71.2 156 38.5
Sed0004453 Sechium edule HOM05D002725 ORTHO05D003279 1.2e-10 71.2 152 37.5
CAN.G1178.23 Capsicum annuum HOM05D002725 ORTHO05D003279 1.6e-10 70.9 156 37.8
Ca_25613_v3 Cicer arietinum L. HOM05D002725 ORTHO05D003279 1.6e-10 70.9 156 37.2
Manes.13G031300 Manihot esculenta HOM05D002725 ORTHO05D003279 1.6e-10 70.9 156 37.2
FvH4_5g18910 Fragaria vesca HOM05D002725 ORTHO05D003279 2.1e-10 70.5 123 41.5
Glyma.16G063000 Glycine max HOM05D002725 ORTHO05D003279 2.7e-10 70.1 156 36.5
Glyma.19G082500 Glycine max HOM05D002725 ORTHO05D003279 2.7e-10 70.1 156 36.5
PSO063G5148 Papaver somniferum HOM05D002725 ORTHO05D003279 2.7e-10 70.1 152 38.2
PSO832G2366 Papaver somniferum HOM05D002725 ORTHO05D003279 2.7e-10 70.1 152 38.2
Psat3g161280 Pisum sativum HOM05D002725 ORTHO05D003279 2.7e-10 70.1 156 36.5
unitig_22.g6933 Utricularia gibba HOM05D002725 ORTHO05D003279 2.7e-10 70.1 159 36.5
Actinidia01708 Actinidia chinensis HOM05D002725 ORTHO05D003279 3.5e-10 69.7 152 38.2
Ca_06608_v3 Cicer arietinum L. HOM05D002725 ORTHO05D003279 3.5e-10 69.7 152 36.8
HanXRQChr08g0234721 Helianthus annuus HOM05D002725 ORTHO05D003279 3.5e-10 69.7 159 37.1
MBI10_g36211_MAGBIO Magnolia biondii HOM05D002725 ORTHO05D003279 3.5e-10 69.7 156 37.8
MBI18_g25085_MAGBIO Magnolia biondii HOM05D002725 ORTHO05D003279 3.5e-10 69.7 156 37.8
Manes.12G030200 Manihot esculenta HOM05D002725 ORTHO05D003279 3.5e-10 69.7 156 37.2
Hma1.2p1_0867F.1_g230300 Hydrangea macrophylla HOM05D002725 ORTHO05D003279 4.6e-10 69.3 156 37.2
Os04g0555400 Oryza sativa ssp. japonica HOM05D002725 ORTHO05D003279 4.6e-10 69.3 156 36.5
PGR119G1015 Punica granatum HOM05D002725 ORTHO05D003279 4.6e-10 69.3 156 37.8
Solyc08g078430.4 Solanum lycopersicum HOM05D002725 ORTHO05D003279 4.6e-10 69.3 156 37.2
Sopen08g026920 Solanum pennellii HOM05D002725 ORTHO05D003279 4.6e-10 69.3 156 37.2
CDE11G0115 Ceratophyllum demersum HOM05D002725 ORTHO05D003279 6.0e-10 68.9 156 37.8
Sc14g0008580 Simmondsia chinensis HOM05D002725 ORTHO05D003279 6.0e-10 68.9 132 39.4
PGSC0003DMG400004771 Solanum tuberosum HOM05D002725 ORTHO05D003279 6.0e-10 68.9 156 37.2
TPR.G9070 Trifolium pratense HOM05D002725 ORTHO05D003279 6.0e-10 68.9 156 35.9
Cpa.g.sc824.3 Carica papaya HOM05D002725 ORTHO05D003279 7.8e-10 68.6 156 36.5
Cc11_g14540 Coffea canephora HOM05D002725 ORTHO05D003279 7.8e-10 68.6 156 35.3
Lalb_Chr22g0360531 Lupinus albus HOM05D002725 ORTHO05D003279 7.8e-10 68.6 156 35.3
Rhsim07G0220200 Rhododendron simsii HOM05D002725 ORTHO05D003279 7.8e-10 68.6 157 35.0
arahy.Tifrunner.gnm1.ann1.JTBU3D Arachis hypogaea HOM05D002725 ORTHO05D003279 1.0e-09 68.2 156 36.5
arahy.Tifrunner.gnm1.ann1.JXF13M Arachis hypogaea HOM05D002725 ORTHO05D003279 1.0e-09 68.2 156 36.5
arahy.Tifrunner.gnm1.ann1.LYET28 Arachis hypogaea HOM05D002725 ORTHO05D003279 1.0e-09 68.2 156 36.5
Dinv24871 Davidia involucrata HOM05D002725 ORTHO05D003279 1.0e-09 68.2 156 37.2
Eucgr.H02616 Eucalyptus grandis HOM05D002725 ORTHO05D003279 1.0e-09 68.2 156 37.2
Phvul.008G149300 Phaseolus vulgaris HOM05D002725 ORTHO05D003279 1.0e-09 68.2 156 35.9
QL03p061701 Quercus lobata HOM05D002725 ORTHO05D003279 1.0e-09 68.2 156 36.5
VMungo0464G0614 Vigna mungo HOM05D002725 ORTHO05D003279 1.0e-09 68.2 156 35.9
CANSAT56G0776 Cannabis sativa HOM05D002725 ORTHO05D003279 1.3e-09 67.8 156 35.9
CsaV3_5G031650 Cucumis sativus L. HOM05D002725 ORTHO05D003279 1.3e-09 67.8 155 35.5
Migut.K01129 Erythranthe guttata HOM05D002725 ORTHO05D003279 1.3e-09 67.8 152 37.5
Hund25340 Selenicereus undatus HOM05D002725 ORTHO05D003279 1.3e-09 67.8 132 38.6
arahy.Tifrunner.gnm1.ann1.D69TB6 Arachis hypogaea HOM05D002725 ORTHO05D003279 1.7e-09 67.4 156 36.5
Ciclev10031363m.g Citrus clementina HOM05D002725 ORTHO05D003279 1.7e-09 67.4 156 36.5
Lj1g0003905 Lotus japonicus HOM05D002725 ORTHO05D003279 1.7e-09 67.4 156 35.3
Potri.014G102800 Populus trichocarpa HOM05D002725 ORTHO05D003279 1.7e-09 67.4 156 35.9
Rhsim06G0227800 Rhododendron simsii HOM05D001458 ORTHO05D010009 1.7e-09 67.4 39 89.7
DCAR_031095 Daucus carota HOM05D002725 ORTHO05D003279 2.3e-09 67.0 137 39.4
Lsat_1_v5_gn_1_10560 Lactuca sativa HOM05D002725 ORTHO05D003279 2.3e-09 67.0 159 35.8
Lsat_1_v5_gn_8_158161 Lactuca sativa HOM05D002725 ORTHO05D003279 2.3e-09 67.0 159 35.8
Phvul.003G041300 Phaseolus vulgaris HOM05D002725 ORTHO05D003279 2.3e-09 67.0 156 35.9
Sabra02G0137700 Salix brachista HOM05D002725 ORTHO05D003279 2.3e-09 67.0 156 35.9
THA.LOC104812782 Tarenaya hassleriana HOM05D002725 ORTHO05D003279 2.3e-09 67.0 156 36.5
MELO3C012005.2 Cucumis melo HOM05D002725 ORTHO05D003279 3.0e-09 66.6 155 35.5
Zm00001eb074440 Zea mays HOM05D002725 ORTHO05D003279 3.9e-09 66.2 159 35.8
Carub.0002s0508 Capsella rubella HOM05D002725 ORTHO05D003279 6.6e-09 65.5 156 35.9
CiPaw.05G149700 Carya illinoinensis HOM05D002725 ORTHO05D003279 6.6e-09 65.5 156 35.3
Thecc.02G244300 Theobroma cacao HOM05D002725 ORTHO05D003279 8.6e-09 65.1 156 34.6
EL10Ac6g13658 Beta vulgaris HOM05D002725 ORTHO05D003279 1.1e-08 64.7 128 37.5
Haze_12164 Corylus avellana HOM05D002725 ORTHO05D003279 1.1e-08 64.7 156 35.3
Potri.002G176000 Populus trichocarpa HOM05D002725 ORTHO05D003279 1.1e-08 64.7 156 35.3
Prupe.6G220500 Prunus persica HOM05D002725 ORTHO05D003279 1.1e-08 64.7 159 35.2
CiPaw.14G100600 Carya illinoinensis HOM05D002725 ORTHO05D003279 1.5e-08 64.3 156 35.3
AL2G16480 Arabidopsis lyrata HOM05D002725 ORTHO05D003279 1.9e-08 63.9 156 36.5
ATR0680G011 Amborella trichopoda HOM05D002725 ORTHO05D003279 2.5e-08 63.5 156 35.3
MD02G1186000 Malus domestica HOM05D002725 ORTHO05D003279 2.5e-08 63.5 152 34.9
Duzib106G0624 Durio zibethinus HOM05D002725 ORTHO05D003279 3.3e-08 63.2 156 34.6
FvH4_1g17710 Fragaria vesca HOM05D002725 ORTHO05D003279 3.3e-08 63.2 156 34.6
FAN19G1008 Fragaria x ananassa HOM05D002725 ORTHO05D003279 3.3e-08 63.2 156 34.6
FAN28G0598 Fragaria x ananassa HOM05D002725 ORTHO05D003279 3.3e-08 63.2 156 34.6
ECA233G4284 Erigeron canadensis HOM05D002725 ORTHO05D003279 4.3e-08 62.8 159 35.8
FAN23G0685 Fragaria x ananassa HOM05D002725 ORTHO05D003279 4.3e-08 62.8 156 34.6
FAN26G2216 Fragaria x ananassa HOM05D002725 ORTHO05D003279 4.3e-08 62.8 156 34.6
RcHm_v2.0_Chr2g0108041 Rosa chinensis HOM05D002725 ORTHO05D003279 4.3e-08 62.8 156 34.6
AagrBONN_evm.TU.Sc2ySwM_344.2036 Anthoceros agrestis HOM05D002725 ORTHO05D003279 5.6e-08 62.4 156 34.0
AagrBONN_evm.TU.Sc2ySwM_368.3392 Anthoceros agrestis HOM05D002725 ORTHO05D003279 5.6e-08 62.4 156 35.3
AUR62005361 Chenopodium quinoa HOM05D002725 ORTHO05D003279 5.6e-08 62.4 132 37.1
Prupe.5G061600 Prunus persica HOM05D002725 ORTHO05D003279 5.6e-08 62.4 156 34.6
TWI75G1526 Tripterygium wilfordii HOM05D002725 ORTHO05D003279 5.6e-08 62.4 156 34.0
Ah.02g129870 Amaranthus hybridus HOM05D002725 ORTHO05D003279 7.3e-08 62.0 132 37.1
BcaB04g20253 Brassica carinata HOM05D002725 ORTHO05D003279 7.3e-08 62.0 156 37.2
BcaC02g10686 Brassica carinata HOM05D002725 ORTHO05D003279 7.3e-08 62.0 156 35.9
BcaC09g49421 Brassica carinata HOM05D002725 ORTHO05D003279 7.3e-08 62.0 156 37.2
A01p29130 Brassica napus HOM05D002725 ORTHO05D003279 7.3e-08 62.0 156 37.2
C01p36870 Brassica napus HOM05D002725 ORTHO05D003279 7.3e-08 62.0 156 37.2
C05p51290 Brassica napus HOM05D002725 ORTHO05D003279 7.3e-08 62.0 156 35.9
BolC1t03648H Brassica oleracea HOM05D002725 ORTHO05D003279 7.3e-08 62.0 156 37.2
BolC4t24141H Brassica oleracea HOM05D002725 ORTHO05D003279 7.3e-08 62.0 156 35.9
BraA01t02981Z Brassica rapa HOM05D002725 ORTHO05D003279 7.3e-08 62.0 156 37.2
Gohir.A03G140600 Gossypium hirsutum HOM05D002725 ORTHO05D003279 7.3e-08 62.0 156 33.3
AUR62014016 Chenopodium quinoa HOM05D002725 ORTHO05D003279 9.5e-08 61.6 132 36.4
Gorai.005G183400 Gossypium raimondii HOM05D002725 ORTHO05D003279 9.5e-08 61.6 156 33.3
AT1G60170 Arabidopsis thaliana HOM05D002725 ORTHO05D003279 1.2e-07 61.2 156 35.3
BcaC06g31807 Brassica carinata HOM05D002725 ORTHO05D003279 1.2e-07 61.2 156 35.9
COL.COLO4_36975 Corchorus olitorius HOM05D002725 ORTHO05D003279 1.2e-07 61.2 156 32.7
THA.LOC104816751 Tarenaya hassleriana HOM05D002725 ORTHO05D003279 1.2e-07 61.2 156 35.3
vmacro20426 Vaccinium macrocarpon HOM05D002725 ORTHO05D003279 1.2e-07 61.2 147 33.3
EL10Ac6g13657 Beta vulgaris HOM05D002725 ORTHO05D003279 1.6e-07 60.8 128 38.3
Duzib268G0345 Durio zibethinus HOM05D002725 ORTHO05D003279 2.1e-07 60.5 156 33.3
Thhalv10021986m.g Eutrema salsugineum HOM05D002725 ORTHO05D003279 2.1e-07 60.5 140 30.0
Os07g0141600 Oryza sativa ssp. japonica HOM05D002725 ORTHO05D003279 2.1e-07 60.5 156 34.6
CARHR292010 Cardamine hirsuta HOM05D002725 ORTHO05D003279 3.6e-07 59.7 156 34.6
Gohir.D02G163400 Gossypium hirsutum HOM05D002725 ORTHO05D003279 3.6e-07 59.7 152 32.9
AL8G22600 Arabidopsis lyrata HOM05D002725 ORTHO05D003279 4.7e-07 59.3 156 31.4
Aa31LG2G10130 Aethionema arabicum HOM05D002725 ORTHO05D003279 1.4e-06 57.8 159 35.2
Sp2g04490 Schrenkiella parvula HOM05D002725 ORTHO05D003279 1.8e-06 57.4 156 34.6
arahy.Tifrunner.gnm1.ann1.4NKX68 Arachis hypogaea HOM05D002725 ORTHO05D003279 2.4e-06 57.0 142 34.5
Rhsim05G0226000 Rhododendron simsii HOM05D006201 ORTHO05D007178 2.4e-06 57.0 209 33.0
SMO139G0072 Selaginella moellendorffii HOM05D002725 ORTHO05D003279 4.0e-06 56.2 142 35.2
Thhalv10023432m.g Eutrema salsugineum HOM05D002725 ORTHO05D003279 5.2e-06 55.8 156 34.0
PSO832G3550 Papaver somniferum HOM05D002725 ORTHO05D003279 5.2e-06 55.8 152 36.2
Aqoxy5G00737 Aquilegia oxysepala HOM05D002725 ORTHO05D003279 6.8e-06 55.5 146 33.6
SHI27131 Sapria himalayana HOM05D002725 ORTHO05D003279 6.8e-06 55.5 155 33.5
DCAR_025614 Daucus carota HOM05D002725 ORTHO05D003279 8.9e-06 55.1 157 32.5
Migut.N01594 Erythranthe guttata HOM05D002725 ORTHO05D003279 8.9e-06 55.1 154 35.7
Thhalv10009759m.g Eutrema salsugineum HOM05D002725 ORTHO05D003279 8.9e-06 55.1 156 31.4
Peaxi162Scf01086g00013 Petunia axillaris HOM05D002725 ORTHO05D003279 8.9e-06 55.1 158 36.7


User provided reference genes

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