Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0183100 Rhododendron simsii HOM05D003241 ORTHO05D003812 1.0e-70 270.0 138 100.0
Rhsim06G0182100 Rhododendron simsii HOM05D003241 ORTHO05D003812 5.0e-70 267.7 138 99.3
TAR381G1550 Trochodendron aralioides HOM05D003241 ORTHO05D003812 6.8e-19 97.8 142 47.9
TAR571G0002 Trochodendron aralioides HOM05D003241 ORTHO05D003812 6.8e-19 97.8 142 47.9
TAR625G1302 Trochodendron aralioides HOM05D003241 ORTHO05D003812 6.8e-19 97.8 142 47.9
Actinidia21372 Actinidia chinensis HOM05D003241 ORTHO05D003812 7.5e-18 94.4 107 57.0
PGR031G3475 Punica granatum HOM05D003241 ORTHO05D003812 7.5e-18 94.4 142 45.1
Nn5g27739 Nelumbo nucifera HOM05D003241 ORTHO05D003812 9.8e-18 94.0 119 50.4
Dinv09319 Davidia involucrata HOM05D003241 ORTHO05D003812 1.3e-17 93.6 119 48.7
vmacro19776 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 1.3e-17 93.6 129 46.5
Cpa.g.sc115.47 Carica papaya HOM05D003241 ORTHO05D003812 2.2e-17 92.8 130 46.2
Aqoxy4G03221 Aquilegia oxysepala HOM05D003241 ORTHO05D003812 3.7e-17 92.0 125 46.4
vmacro19775 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 3.7e-17 92.0 139 43.9
Lalb_Chr03g0032261 Lupinus albus HOM05D003241 ORTHO05D003812 4.9e-17 91.7 128 46.9
Lalb_Chr19g0130441 Lupinus albus HOM05D003241 ORTHO05D003812 4.9e-17 91.7 128 46.9
Solyc11g008470.2 Solanum lycopersicum HOM05D003241 ORTHO05D003812 4.9e-17 91.7 131 43.5
Sopen11g004250 Solanum pennellii HOM05D003241 ORTHO05D003812 4.9e-17 91.7 131 43.5
Dinv19008 Davidia involucrata HOM05D003241 ORTHO05D003812 6.4e-17 91.3 119 47.9
Oeu058578.1 Olea europaea HOM05D003241 ORTHO05D003812 6.4e-17 91.3 139 42.4
Os02g0511500 Oryza sativa ssp. japonica HOM05D003241 ORTHO05D003812 8.3e-17 90.9 128 46.1
SEGI_01763 Sequoiadendron giganteum HOM05D003241 ORTHO05D003812 8.3e-17 90.9 106 50.0
GSVIVG01035173001 Vitis vinifera HOM05D003241 ORTHO05D003812 8.3e-17 90.9 119 47.1
Glyma.07G220800 Glycine max HOM05D003241 ORTHO05D003812 1.1e-16 90.5 150 44.7
HPP92_003413 Vanilla planifolia HOM05D003241 ORTHO05D008621 1.1e-16 90.5 110 50.0
arahy.Tifrunner.gnm1.ann1.2W1DSR Arachis hypogaea HOM05D003241 ORTHO05D003812 1.4e-16 90.1 128 45.3
arahy.Tifrunner.gnm1.ann1.61N80Q Arachis hypogaea HOM05D003241 ORTHO05D003812 1.4e-16 90.1 128 45.3
Lj3g0022607 Lotus japonicus HOM05D003241 ORTHO05D003812 1.4e-16 90.1 140 42.9
Phvul.011G184800 Phaseolus vulgaris HOM05D003241 ORTHO05D003812 1.4e-16 90.1 139 46.0
Zm00001eb140630 Zea mays HOM05D003241 ORTHO05D003812 1.4e-16 90.1 128 43.8
CAN.G321.38 Capsicum annuum HOM05D003241 ORTHO05D003812 2.4e-16 89.4 137 41.6
Glyma.08G229600 Glycine max HOM05D003241 ORTHO05D003812 2.4e-16 89.4 144 42.4
Nitab4.5_0004325g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 2.4e-16 89.4 118 44.9
Nitab4.5_0004385g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 2.4e-16 89.4 118 44.9
ATR1098G045 Amborella trichopoda HOM05D003241 ORTHO05D003812 3.2e-16 89.0 125 44.8
Cfa015650 Carpinus fangiana HOM05D003241 ORTHO05D003812 4.1e-16 88.6 134 44.8
MBI18_g28212_MAGBIO Magnolia biondii HOM05D003241 ORTHO05D003812 4.1e-16 88.6 146 42.5
TWI32G0731 Tripterygium wilfordii HOM05D003241 ORTHO05D003812 4.1e-16 88.6 113 46.9
Migut.J00827 Erythranthe guttata HOM05D003241 ORTHO05D003812 5.4e-16 88.2 120 45.0
Haze_00894 Corylus avellana HOM05D003241 ORTHO05D003812 7.0e-16 87.8 135 45.2
Medtr1g083910 Medicago truncatula HOM05D003241 ORTHO05D003812 7.0e-16 87.8 149 42.3
Ciclev10000233m.g Citrus clementina HOM05D003241 ORTHO05D003812 9.2e-16 87.4 147 42.9
Duzib213G0093 Durio zibethinus HOM05D003241 ORTHO05D003812 9.2e-16 87.4 123 46.3
Manes.16G074400 Manihot esculenta HOM05D003241 ORTHO05D003812 9.2e-16 87.4 110 48.2
PGSC0003DMG400007426 Solanum tuberosum HOM05D003241 ORTHO05D003812 9.2e-16 87.4 137 40.9
COL.COLO4_13873 Corchorus olitorius HOM05D003241 ORTHO05D003812 1.6e-15 86.7 150 42.7
Eucgr.L01432 Eucalyptus grandis HOM05D003241 ORTHO05D003812 1.6e-15 86.7 142 43.7
Oeu011820.1 Olea europaea HOM05D003241 ORTHO05D003812 1.6e-15 86.7 141 41.8
AUR62018246 Chenopodium quinoa HOM05D003241 ORTHO05D003812 2.0e-15 86.3 161 39.8
Eucgr.J03092 Eucalyptus grandis HOM05D003241 ORTHO05D003812 2.0e-15 86.3 141 43.3
Atru.chr4.2711 Acer truncatum HOM05D003241 ORTHO05D003812 2.7e-15 85.9 140 42.9
AUR62034840 Chenopodium quinoa HOM05D003241 ORTHO05D003812 2.7e-15 85.9 161 38.5
DCAR_019828 Daucus carota HOM05D003241 ORTHO05D003812 2.7e-15 85.9 104 46.2
Rhsim01G0112900 Rhododendron simsii HOM05D003241 ORTHO05D003812 2.7e-15 85.9 133 43.6
SGA_v2.0_scaffold31G12724 Striga asiatica HOM05D003241 ORTHO05D003812 3.5e-15 85.5 119 46.2
TPR.G2613 Trifolium pratense HOM05D003241 ORTHO05D003812 3.5e-15 85.5 148 39.9
vmacro13976 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 3.5e-15 85.5 133 43.6
Gohir.A04G045600 Gossypium hirsutum HOM05D003241 ORTHO05D003812 4.6e-15 85.1 115 46.1
Gohir.D05G337200 Gossypium hirsutum HOM05D003241 ORTHO05D003812 4.6e-15 85.1 115 46.1
Gorai.009G361400 Gossypium raimondii HOM05D003241 ORTHO05D003812 4.6e-15 85.1 115 46.1
Potri.001G082100 Populus trichocarpa HOM05D003241 ORTHO05D003812 4.6e-15 85.1 146 40.4
Hund17599 Selenicereus undatus HOM05D003241 ORTHO05D003812 4.6e-15 85.1 144 41.0
SalBow3G1087 Salvia bowleyana HOM05D003241 ORTHO05D003812 6.0e-15 84.7 110 45.5
Carub.0006s1500 Capsella rubella HOM05D003241 ORTHO05D003812 7.8e-15 84.3 129 42.6
Thhalv10012684m.g Eutrema salsugineum HOM05D003241 ORTHO05D003812 7.8e-15 84.3 114 44.7
unitig_749.g14191 Utricularia gibba HOM05D003241 ORTHO05D003812 7.8e-15 84.3 119 42.9
unitig_77.g31483 Utricularia gibba HOM05D003241 ORTHO05D003812 7.8e-15 84.3 119 42.9
BcaC04g18848 Brassica carinata HOM05D003241 ORTHO05D003812 1.0e-14 84.0 114 44.7
BcaC04g18849 Brassica carinata HOM05D003241 ORTHO05D003812 1.0e-14 84.0 114 44.7
A10p22440 Brassica napus HOM05D003241 ORTHO05D003812 1.0e-14 84.0 114 44.7
C09p60290 Brassica napus HOM05D003241 ORTHO05D003812 1.0e-14 84.0 114 44.7
BolC9t58862H Brassica oleracea HOM05D003241 ORTHO05D003812 1.0e-14 84.0 114 44.7
BraA10t44303Z Brassica rapa HOM05D003241 ORTHO05D003812 1.0e-14 84.0 114 44.7
Ca_13374_v3 Cicer arietinum L. HOM05D003241 ORTHO05D003812 1.0e-14 84.0 149 40.3
QL06p002249 Quercus lobata HOM05D003241 ORTHO05D003812 1.3e-14 83.6 122 45.9
QL06p002393 Quercus lobata HOM05D003241 ORTHO05D003812 1.3e-14 83.6 122 45.9
Aa31LG11G12850 Aethionema arabicum HOM05D003241 ORTHO05D003812 1.7e-14 83.2 115 45.2
Nitab4.5_0002344g0060 Nicotiana tabacum HOM05D003241 ORTHO05D003812 1.7e-14 83.2 112 46.4
Pp3c15_10170 Physcomitrium patens HOM05D003241 ORTHO05D003812 1.7e-14 83.2 116 42.2
ECA248G0833 Erigeron canadensis HOM05D003241 ORTHO05D003812 2.3e-14 82.8 129 41.9
EL10Ac6g15598 Beta vulgaris HOM05D003241 ORTHO05D003812 3.0e-14 82.4 126 41.3
CARHR196380 Cardamine hirsuta HOM05D003241 ORTHO05D003812 3.0e-14 82.4 117 43.6
CBR_g32002 Chara braunii HOM05D003241 ORTHO05D003812 3.9e-14 82.0 106 47.2
AL6G27800 Arabidopsis lyrata HOM05D003241 ORTHO05D003812 5.0e-14 81.6 129 41.9
CiPaw.02G097400 Carya illinoinensis HOM05D003241 ORTHO05D003812 5.0e-14 81.6 154 41.6
Mapoly0063s0006 Marchantia polymorpha HOM05D003241 ORTHO05D003812 5.0e-14 81.6 110 48.2
Lj2C819G2 Lonicera japonica HOM05D003241 ORTHO05D003812 6.6e-14 81.3 133 40.6
AagrBONN_evm.TU.Sc2ySwM_344.1153__1154 Anthoceros agrestis HOM05D003241 ORTHO05D003812 8.6e-14 80.9 114 46.5
Duzib268G1256 Durio zibethinus HOM05D003241 ORTHO05D003812 1.1e-13 80.5 152 40.1
HanXRQChr09g0244631 Helianthus annuus HOM05D003241 ORTHO05D003812 1.1e-13 80.5 140 38.6
Lsat_1_v5_gn_1_54260 Lactuca sativa HOM05D003241 ORTHO05D003812 1.5e-13 80.1 143 39.2
ClCG08G000490 Citrullus lanatus HOM05D003241 ORTHO05D003812 1.9e-13 79.7 161 37.3
AT5G16780 Arabidopsis thaliana HOM05D003241 ORTHO05D003812 3.3e-13 79.0 134 40.3
CsaV3_5G040300 Cucumis sativus L. HOM05D003241 ORTHO05D003812 3.3e-13 79.0 161 36.6
Solyc01g099380.4 Solanum lycopersicum HOM05D003241 ORTHO05D003812 3.3e-13 79.0 106 45.3
MELO3C022204.2 Cucumis melo HOM05D003241 ORTHO05D003812 5.6e-13 78.2 161 36.6
Nitab4.5_0014335g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 5.6e-13 78.2 95 50.5
Sed0020388 Sechium edule HOM05D003241 ORTHO05D003812 5.6e-13 78.2 127 39.4
SMO361G0171 Selaginella moellendorffii HOM05D003241 ORTHO05D003812 7.3e-13 77.8 149 37.6
COL.COLO4_17461 Corchorus olitorius HOM05D003241 ORTHO05D003812 9.5e-13 77.4 156 37.8
Lj6g0011042 Lotus japonicus HOM05D003241 ORTHO05D003812 9.5e-13 77.4 143 40.6
PSO063G3239 Papaver somniferum HOM05D003241 ORTHO05D003812 9.5e-13 77.4 100 51.0
Sopen01g042940 Solanum pennellii HOM05D003241 ORTHO05D003812 9.5e-13 77.4 106 45.3
PGSC0003DMG400024746 Solanum tuberosum HOM05D003241 ORTHO05D003812 9.5e-13 77.4 133 41.4
QL09p049212 Quercus lobata HOM05D003241 ORTHO05D003812 1.2e-12 77.0 127 45.7
Actinidia29972 Actinidia chinensis HOM05D003241 ORTHO05D003812 1.6e-12 76.6 130 40.0
Peaxi162Scf00296g00721 Petunia axillaris HOM05D003241 ORTHO05D003812 2.8e-12 75.9 118 41.5
Psat6g151960 Pisum sativum HOM05D003241 ORTHO05D003812 4.7e-12 75.1 138 37.7
FAN27G2894 Fragaria x ananassa HOM05D003241 ORTHO05D003812 1.1e-11 73.9 178 35.4
PSO339G6261 Papaver somniferum HOM05D003241 ORTHO05D003812 1.8e-11 73.2 111 44.1
Prupe.1G014100 Prunus persica HOM05D003241 ORTHO05D003812 1.8e-11 73.2 170 35.9
PSO013G0353 Papaver somniferum HOM05D003241 ORTHO05D003812 2.3e-11 72.8 111 44.1
RcHm_v2.0_Chr4g0416151 Rosa chinensis HOM05D003241 ORTHO05D003812 2.3e-11 72.8 178 35.4
BraA05t22289Z Brassica rapa HOM05D003241 ORTHO05D003812 3.1e-11 72.4 95 44.2
PSO339G1389 Papaver somniferum HOM05D003241 ORTHO05D003812 3.1e-11 72.4 110 45.5
FvH4_4g15641 Fragaria vesca HOM05D003241 ORTHO05D003812 4.0e-11 72.0 178 34.8
FAN12G3728 Fragaria x ananassa HOM05D003241 ORTHO05D003812 4.0e-11 72.0 178 34.8
FAN20G2531 Fragaria x ananassa HOM05D003241 ORTHO05D003812 4.0e-11 72.0 167 35.9
MD13G1193700 Malus domestica HOM05D003241 ORTHO05D003812 5.2e-11 71.6 182 33.5
A05p34740 Brassica napus HOM05D003241 ORTHO05D003812 6.8e-11 71.2 95 44.2
MD16G1194300 Malus domestica HOM05D003241 ORTHO05D003812 6.8e-11 71.2 184 32.1
Medtr1g032020 Medicago truncatula HOM05D003241 ORTHO05D003812 6.8e-11 71.2 109 39.4
Medtr1g032350 Medicago truncatula HOM05D003241 ORTHO05D003812 6.8e-11 71.2 109 39.4
AL3G27010 Arabidopsis lyrata HOM05D003241 ORTHO05D003812 8.9e-11 70.9 90 41.1
Haze_08784 Corylus avellana HOM05D003241 ORTHO05D003812 8.9e-11 70.9 46 73.9
AT3G14700 Arabidopsis thaliana HOM05D003241 ORTHO05D003812 1.2e-10 70.5 91 41.8
FAN15G1779 Fragaria x ananassa HOM05D003241 ORTHO05D003812 1.2e-10 70.5 178 34.8
PRCOL_00003741 Prasinoderma coloniale HOM05D003241 ORTHO05D003812 1.5e-10 70.1 97 44.3
RcHm_v2.0_Chr4g0416161 Rosa chinensis HOM05D003241 ORTHO05D003812 2.0e-10 69.7 178 36.0
Thecc.07G135300 Theobroma cacao HOM05D003241 ORTHO05D003812 5.8e-10 68.2 128 40.6
BcaC05g29043 Brassica carinata HOM05D003241 ORTHO05D003812 9.8e-10 67.4 94 42.6
C05p52560 Brassica napus HOM05D003241 ORTHO05D003812 9.8e-10 67.4 94 42.6
ECA248G0244 Erigeron canadensis HOM05D003241 ORTHO05D003812 9.8e-10 67.4 143 37.1
FAN17G1371 Fragaria x ananassa HOM05D003241 ORTHO05D003812 9.8e-10 67.4 178 34.3
Peaxi162Scf00067g00244 Petunia axillaris HOM05D003241 ORTHO05D003812 1.3e-09 67.0 109 41.3
MD07G1289000 Malus domestica HOM05D003241 ORTHO05D003812 6.4e-09 64.7 90 44.4
MCO08G320 Micromonas commoda HOM05D003241 ORTHO05D003812 8.3e-09 64.3 111 40.5
BcaB06g25362 Brassica carinata HOM05D003241 ORTHO05D003812 1.1e-08 63.9 90 43.3
Carub.0003s1438 Capsella rubella HOM05D003241 ORTHO05D003812 1.1e-08 63.9 92 42.4
Migut.N01793 Erythranthe guttata HOM05D003241 ORTHO05D003812 1.9e-08 63.2 101 40.6
RcHm_v2.0_Chr7g0234901 Rosa chinensis HOM05D003241 ORTHO05D003812 2.4e-08 62.8 102 39.2
SMO111G0075 Selaginella moellendorffii HOM05D003241 ORTHO05D003812 2.4e-08 62.8 87 43.7
AagrBONN_evm.TU.Sc2ySwM_117.3043 Anthoceros agrestis HOM05D003241 ORTHO05D003812 3.2e-08 62.4 108 41.7
Thhalv10022422m.g Eutrema salsugineum HOM05D003241 ORTHO05D003812 4.1e-08 62.0 134 32.1
Atru.chr1.2009 Acer truncatum HOM05D003241 ORTHO05D003812 5.4e-08 61.6 97 39.2
SMO111G0085 Selaginella moellendorffii HOM05D003241 ORTHO05D003812 5.4e-08 61.6 86 43.0
SMO351G0236 Selaginella moellendorffii HOM05D003241 ORTHO05D003812 5.4e-08 61.6 86 43.0
Lj2A813G14 Lonicera japonica HOM05D003241 ORTHO05D003812 9.2e-08 60.8 140 35.0
Actinidia16705 Actinidia chinensis HOM05D003241 ORTHO05D003812 1.6e-07 60.1 115 37.4
Aa31LG8G1930 Aethionema arabicum HOM05D003241 ORTHO05D000015 2.7e-07 59.3 100 39.0
CSS0028609 Camellia sinensis var. sinensis HOM05D003241 ORTHO05D003812 3.5e-07 58.9 128 39.1
Eucgr.L02270 Eucalyptus grandis HOM05D001083 ORTHO05D003812 4.6e-07 58.5 41 68.3
AagrBONN_evm.TU.Sc2ySwM_117.3514 Anthoceros agrestis HOM05D003241 ORTHO05D003812 1.3e-06 57.0 96 39.6


User provided reference genes

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