Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0125100 Rhododendron simsii HOM05D001734 ORTHO05D003483 1.4e-60 236.1 119 100.0
Rhsim08G0172200 Rhododendron simsii HOM05D001734 ORTHO05D003483 2.7e-48 195.3 117 88.9
vmacro19389 Vaccinium macrocarpon HOM05D001734 ORTHO05D003483 6.2e-45 184.1 117 82.9
Dinv20652 Davidia involucrata HOM05D001734 ORTHO05D003483 2.7e-40 168.7 117 73.5
Cfa019134 Carpinus fangiana HOM05D001734 ORTHO05D003483 1.8e-36 156.0 114 70.2
CANSAT80G1574 Cannabis sativa HOM05D001734 ORTHO05D003483 4.0e-36 154.8 116 70.7
Peaxi162Scf00009g00112 Petunia axillaris HOM05D001734 ORTHO05D003483 5.3e-36 154.5 114 70.2
QL10p011601 Quercus lobata HOM05D001734 ORTHO05D003483 6.9e-36 154.1 114 69.3
GSVIVG01007755001 Vitis vinifera HOM05D001734 ORTHO05D003483 9.0e-36 153.7 117 65.0
TAR629G2960 Trochodendron aralioides HOM05D001734 ORTHO05D003483 2.0e-35 152.5 114 66.7
Nitab4.5_0000984g0080 Nicotiana tabacum HOM05D001734 ORTHO05D003483 2.6e-35 152.1 115 69.6
Cc04_g14140 Coffea canephora HOM05D001734 ORTHO05D003483 4.5e-35 151.4 116 68.1
CiPaw.11G026100 Carya illinoinensis HOM05D001734 ORTHO05D003483 5.8e-35 151.0 114 66.7
Duzib084G0583 Durio zibethinus HOM05D001734 ORTHO05D003483 1.3e-34 149.8 114 68.4
PGR044G0033 Punica granatum HOM05D001734 ORTHO05D003483 1.3e-34 149.8 117 64.1
RcHm_v2.0_Chr6g0271131 Rosa chinensis HOM05D001734 ORTHO05D003483 1.3e-34 149.8 114 67.5
COL.COLO4_30039 Corchorus olitorius HOM05D001734 ORTHO05D003483 2.2e-34 149.1 114 68.4
Thecc.03G012800 Theobroma cacao HOM05D001734 ORTHO05D003483 2.2e-34 149.1 114 68.4
TWI14G0283 Tripterygium wilfordii HOM05D001734 ORTHO05D003483 2.2e-34 149.1 114 65.8
Manes.06G105000 Manihot esculenta HOM05D001734 ORTHO05D003483 2.9e-34 148.7 114 67.5
Cpa.g.sc1166.1 Carica papaya HOM05D001734 ORTHO05D003483 3.8e-34 148.3 123 64.2
Sopen03g032020 Solanum pennellii HOM05D001734 ORTHO05D003483 3.8e-34 148.3 115 68.7
SalBow5G1563 Salvia bowleyana HOM05D001734 ORTHO05D003483 6.5e-34 147.5 114 64.9
MD06G1173700 Malus domestica HOM05D001734 ORTHO05D003483 8.4e-34 147.1 115 69.6
CAN.G1305.20 Capsicum annuum HOM05D001734 ORTHO05D003483 1.1e-33 146.7 120 65.8
Lj9A448T39 Lonicera japonica HOM05D001734 ORTHO05D003483 1.4e-33 146.4 128 61.7
MSTRG.11455 Avicennia marina HOM05D001734 ORTHO05D003483 1.9e-33 146.0 116 63.8
Potri.015G076650 Populus trichocarpa HOM05D001734 ORTHO05D003483 1.9e-33 146.0 115 66.1
Glyma.04G182900 Glycine max HOM05D001734 ORTHO05D003483 3.2e-33 145.2 117 65.0
Sc04g0001800 Simmondsia chinensis HOM05D001734 ORTHO05D003483 3.2e-33 145.2 112 67.0
ClCG06G017040 Citrullus lanatus HOM05D001734 ORTHO05D003483 9.3e-33 143.7 114 64.0
Migut.I00009 Erythranthe guttata HOM05D001734 ORTHO05D003483 9.3e-33 143.7 114 63.2
Prupe.5G173600 Prunus persica HOM05D001734 ORTHO05D003483 2.7e-32 142.1 114 65.8
Atru.chr9.2479 Acer truncatum HOM05D001734 ORTHO05D003483 4.6e-32 141.4 117 59.0
Phvul.009G178400 Phaseolus vulgaris HOM05D001734 ORTHO05D003483 6.0e-32 141.0 117 63.2
Lj1g0011912 Lotus japonicus HOM05D001734 ORTHO05D003483 7.9e-32 140.6 117 62.4
SGA_v2.0_scaffold90G27914 Striga asiatica HOM05D001734 ORTHO05D003483 7.9e-32 140.6 111 63.1
Gohir.A09G171700 Gossypium hirsutum HOM05D001734 ORTHO05D003483 1.0e-31 140.2 114 64.9
Gohir.A09G171650 Gossypium hirsutum HOM05D001734 ORTHO05D003483 1.3e-31 139.8 114 64.9
Gorai.006G189100 Gossypium raimondii HOM05D001734 ORTHO05D003483 1.3e-31 139.8 114 64.9
VMungo1309G1926 Vigna mungo HOM05D000002 ORTHO05D000001 1.3e-31 139.8 117 62.4
MELO3C017087.2 Cucumis melo HOM05D001734 ORTHO05D003483 1.8e-31 139.4 114 62.3
EL10Ac5g10743 Beta vulgaris HOM05D001734 ORTHO05D003483 2.3e-31 139.0 117 60.7
Eucgr.K02842 Eucalyptus grandis HOM05D001734 ORTHO05D003483 2.3e-31 139.0 116 60.3
FvH4_2g11670 Fragaria vesca HOM05D001734 ORTHO05D003483 2.3e-31 139.0 114 63.2
FAN24G1896 Fragaria x ananassa HOM05D001734 ORTHO05D003483 2.3e-31 139.0 114 63.2
Sed0023277 Sechium edule HOM05D001734 ORTHO05D003483 3.0e-31 138.7 114 62.3
CsaV3_1G001470 Cucumis sativus L. HOM05D001734 ORTHO05D003483 3.9e-31 138.3 114 62.3
arahy.Tifrunner.gnm1.ann1.2D0TBT Arachis hypogaea HOM05D001734 ORTHO05D003483 6.7e-31 137.5 114 61.4
Ca_16175_v3 Cicer arietinum L. HOM05D001734 ORTHO05D003483 6.7e-31 137.5 117 60.7
FAN15G3378 Fragaria x ananassa HOM05D001734 ORTHO05D003483 6.7e-31 137.5 114 63.2
HanXRQChr02g0036361 Helianthus annuus HOM05D001734 ORTHO05D003483 6.7e-31 137.5 109 65.1
Hund02745 Selenicereus undatus HOM05D001734 ORTHO05D003483 8.7e-31 137.1 113 61.1
Lalb_Chr08g0236521 Lupinus albus HOM05D001734 ORTHO05D003483 3.3e-30 135.2 117 59.8
COL.COLO4_30229 Corchorus olitorius HOM05D001734 ORTHO05D003483 4.3e-30 134.8 114 62.3
Nn4g22757 Nelumbo nucifera HOM05D001734 ORTHO05D003483 5.7e-30 134.4 113 61.9
ECA247G1446 Erigeron canadensis HOM05D001734 ORTHO05D003483 1.6e-29 132.9 108 63.0
Medtr3g077860 Medicago truncatula HOM05D001734 ORTHO05D003483 3.7e-29 131.7 117 56.4
Carub.0005s1431 Capsella rubella HOM05D001734 ORTHO05D003483 4.8e-29 131.3 114 57.9
AT3G48190 Arabidopsis thaliana HOM05D001734 ORTHO05D003483 6.2e-29 131.0 114 57.9
HPP92_004845 Vanilla planifolia HOM05D002152 ORTHO05D003483 8.2e-29 130.6 116 56.9
PSO063G7150 Papaver somniferum HOM05D001734 ORTHO05D003483 1.4e-28 129.8 117 56.4
Lsat_1_v5_gn_1_27061 Lactuca sativa HOM05D001734 ORTHO05D003483 1.8e-28 129.4 109 59.6
PSO063G0326 Papaver somniferum HOM05D001734 ORTHO05D003483 2.4e-28 129.0 117 57.3
PSO732G0258 Papaver somniferum HOM05D001734 ORTHO05D003483 3.1e-28 128.6 117 56.4
DCAR_026136 Daucus carota HOM05D001734 ORTHO05D003483 1.2e-27 126.7 127 52.0
CARHR156920 Cardamine hirsuta HOM05D001734 ORTHO05D003483 2.6e-27 125.6 119 53.8
Aa31LG4G16790 Aethionema arabicum HOM05D001734 ORTHO05D003483 7.6e-27 124.0 114 54.4
SHI17018 Sapria himalayana HOM05D000105 ORTHO05D000023 3.2e-25 118.6 128 48.4
A06p27460 Brassica napus HOM05D001734 ORTHO05D003483 4.2e-25 118.2 114 50.0
BraA06t25686Z Brassica rapa HOM05D001734 ORTHO05D003483 4.2e-25 118.2 114 50.0
CDE07G0247 Ceratophyllum demersum HOM05D001734 ORTHO05D003483 1.0e-23 113.6 106 51.9
FAN05G0227 Fragaria x ananassa HOM05D001734 ORTHO05D003483 3.9e-23 111.7 85 62.4
Os01g0106700 Oryza sativa ssp. japonica HOM05D001734 ORTHO05D003483 9.7e-22 107.1 113 49.6
Rhsim08G0157900 Rhododendron simsii HOM05D001734 ORTHO05D003483 1.6e-21 106.3 68 82.4
Thhalv10010050m.g Eutrema salsugineum HOM05D001734 ORTHO05D003483 2.8e-21 105.5 108 47.2
THA.LOC104818218 Tarenaya hassleriana HOM05D001734 ORTHO05D003483 1.4e-20 103.2 85 57.6
MD14G1180200 Malus domestica HOM05D001734 ORTHO05D003483 3.1e-20 102.1 100 53.0
Aqoxy3G02937 Aquilegia oxysepala HOM05D001734 ORTHO05D003483 9.0e-20 100.5 115 46.1
ATR0730G017 Amborella trichopoda HOM05D001734 ORTHO05D003483 3.4e-19 98.6 112 48.2
C03p66700 Brassica napus HOM05D001734 ORTHO05D003483 7.7e-19 97.4 87 48.3
BolC3t18938H Brassica oleracea HOM05D001734 ORTHO05D003483 7.7e-19 97.4 87 48.3
Zm00001eb126710 Zea mays HOM05D001734 ORTHO05D003483 5.5e-17 91.3 118 39.8
Migut.C00312 Erythranthe guttata HOM05D001734 ORTHO05D003483 2.0e-14 82.8 85 51.8
SEGI_06250 Sequoiadendron giganteum HOM05D001734 ORTHO05D003483 4.3e-14 81.6 86 46.5
Oeu016387.4 Olea europaea HOM05D001734 ORTHO05D003483 2.0e-11 72.8 58 58.6
Pp3c2_23700 Physcomitrium patens HOM05D001734 ORTHO05D003483 2.0e-11 72.8 117 34.2
Mapoly0081s0051 Marchantia polymorpha HOM05D001734 ORTHO05D003483 2.9e-10 68.9 117 34.2
AagrBONN_evm.TU.Sc2ySwM_117.1596 Anthoceros agrestis HOM05D001734 ORTHO05D003483 4.7e-08 61.6 114 36.8
TPR.G5903 Trifolium pratense HOM05D001734 ORTHO05D003483 2.0e-06 56.2 48 54.2


User provided reference genes

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