Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0129300 Rhododendron simsii HOM05D003926 ORTHO05D005273 5.9e-305 1050.0 527 100.0
Rhsim10G0059600 Rhododendron simsii HOM05D003926 ORTHO05D005273 8.9e-269 929.9 529 91.1
Actinidia18083 Actinidia chinensis HOM05D003926 ORTHO05D005273 4.6e-249 864.4 535 83.4
CSS0002647 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 4.9e-243 844.3 536 81.5
CSS0025257 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 4.9e-243 844.3 536 81.5
Dinv34905 Davidia involucrata HOM05D003926 ORTHO05D005273 8.1e-238 827.0 535 79.8
Lj4C124T8 Lonicera japonica HOM05D003926 ORTHO05D005273 1.8e-229 799.3 535 77.2
CAN.G497.55 Capsicum annuum HOM05D003926 ORTHO05D005273 3.0e-224 781.9 537 75.0
Sopen02g034050 Solanum pennellii HOM05D003926 ORTHO05D005273 6.2e-222 774.2 537 74.7
CiPaw.03G082600 Carya illinoinensis HOM05D003926 ORTHO05D005273 1.1e-221 773.5 535 75.3
Solyc02g089260.4 Solanum lycopersicum HOM05D003926 ORTHO05D005273 3.1e-221 771.9 537 74.5
FvH4_6g46320 Fragaria vesca HOM05D003926 ORTHO05D005273 4.0e-221 771.5 535 74.8
Cfa007698 Carpinus fangiana HOM05D003926 ORTHO05D005273 6.9e-221 770.8 535 75.3
Prupe.3G248400 Prunus persica HOM05D003926 ORTHO05D005273 6.9e-221 770.8 535 75.3
QL02p065183 Quercus lobata HOM05D003926 ORTHO05D005273 2.0e-220 769.2 535 75.1
Haze_14378 Corylus avellana HOM05D003926 ORTHO05D005273 4.5e-220 768.1 535 75.1
RcHm_v2.0_Chr2g0164791 Rosa chinensis HOM05D003926 ORTHO05D005273 4.5e-220 768.1 535 75.0
Manes.02G059900 Manihot esculenta HOM05D003926 ORTHO05D005273 3.5e-217 758.4 535 74.4
TAR374G0863 Trochodendron aralioides HOM05D003926 ORTHO05D005273 4.6e-217 758.1 537 73.4
Hund16238 Selenicereus undatus HOM05D003926 ORTHO05D005273 7.9e-217 757.3 535 73.3
Migut.H00584 Erythranthe guttata HOM05D003926 ORTHO05D005273 2.3e-216 755.7 535 73.1
CANSAT64G0948 Cannabis sativa HOM05D003926 ORTHO05D005273 1.5e-215 753.1 535 74.0
Atru.chr8.620 Acer truncatum HOM05D003926 ORTHO05D005273 2.1e-214 749.2 535 73.5
DCAR_011007 Daucus carota HOM05D003926 ORTHO05D005273 2.8e-214 748.8 536 72.9
Thecc.04G107500 Theobroma cacao HOM05D003926 ORTHO05D005273 2.8e-214 748.8 535 73.3
Gorai.001G206500 Gossypium raimondii HOM05D003926 ORTHO05D005273 1.8e-213 746.1 535 73.5
AUR62009475 Chenopodium quinoa HOM05D003926 ORTHO05D005273 2.4e-213 745.7 536 72.9
Cc07_g04520 Coffea canephora HOM05D003926 ORTHO05D005273 2.4e-213 745.7 535 72.7
Nn3g17538 Nelumbo nucifera HOM05D003926 ORTHO05D005273 4.0e-213 745.0 537 72.1
AUR62023153 Chenopodium quinoa HOM05D003926 ORTHO05D005273 5.3e-213 744.6 536 73.1
HanXRQChr15g0464821 Helianthus annuus HOM05D003926 ORTHO05D005273 6.9e-213 744.2 535 73.1
MD17G1066300 Malus domestica HOM05D003926 ORTHO05D005273 7.6e-212 740.7 535 72.7
MBI15_g05000_MAGBIO Magnolia biondii HOM05D003926 ORTHO05D005273 3.8e-211 738.4 537 70.2
EL10Ac2g04434 Beta vulgaris HOM05D003926 ORTHO05D005273 6.5e-211 737.6 535 71.4
Potri.017G101100 Populus trichocarpa HOM05D003926 ORTHO05D005273 1.1e-210 736.9 535 73.3
Lsat_1_v5_gn_4_173381 Lactuca sativa HOM05D003926 ORTHO05D005273 2.5e-210 735.7 537 72.3
MSTRG.23855 Avicennia marina HOM05D003926 ORTHO05D005273 4.2e-210 734.9 535 71.0
ECA232G4780 Erigeron canadensis HOM05D003926 ORTHO05D005273 7.1e-210 734.2 535 71.6
COL.COLO4_10659 Corchorus olitorius HOM05D003926 ORTHO05D005273 9.3e-210 733.8 535 72.7
Duzib133G0169 Durio zibethinus HOM05D003926 ORTHO05D005273 1.6e-209 733.0 535 72.9
Lj1g0000156 Lotus japonicus HOM05D003926 ORTHO05D005273 1.6e-209 733.0 535 72.0
Sabra17G0086900 Salix brachista HOM05D003926 ORTHO05D005273 1.6e-209 733.0 535 72.5
Glyma.18G275200 Glycine max HOM05D003926 ORTHO05D005273 2.1e-209 732.6 535 70.7
MD09G1075600 Malus domestica HOM05D003926 ORTHO05D005273 2.1e-209 732.6 535 72.3
Glyma.08G252600 Glycine max HOM05D003926 ORTHO05D005273 6.0e-209 731.1 535 70.3
TPR.G23405 Trifolium pratense HOM05D003926 ORTHO05D005273 7.9e-209 730.7 535 71.2
Ciclev10010885m.g Citrus clementina HOM05D003926 ORTHO05D005273 1.0e-208 730.3 535 71.6
TWI32G0285 Tripterygium wilfordii HOM05D003926 ORTHO05D005273 1.0e-208 730.3 535 72.1
Lj1g0024205 Lotus japonicus HOM05D003926 ORTHO05D005273 1.3e-208 729.9 535 71.8
Medtr7g017100 Medicago truncatula HOM05D003926 ORTHO05D005273 2.3e-208 729.2 535 71.0
Ca_06914_v3 Cicer arietinum L. HOM05D003926 ORTHO05D005273 3.0e-208 728.8 535 70.8
Ca_06916_v3 Cicer arietinum L. HOM05D003926 ORTHO05D005273 3.0e-208 728.8 535 70.8
PSO063G5950 Papaver somniferum HOM05D003926 ORTHO05D005273 3.0e-208 728.8 537 70.2
PSO782G5674 Papaver somniferum HOM05D003926 ORTHO05D005273 3.9e-208 728.4 537 70.2
TAR622G1093 Trochodendron aralioides HOM05D003926 ORTHO05D005273 1.9e-207 726.1 537 70.4
Ah.16g101010 Amaranthus hybridus HOM05D003926 ORTHO05D005273 2.5e-207 725.7 535 70.8
arahy.Tifrunner.gnm1.ann1.IQIT5J Arachis hypogaea HOM05D003926 ORTHO05D005273 5.7e-207 724.5 535 70.5
Psat3g203080 Pisum sativum HOM05D003926 ORTHO05D005273 1.3e-206 723.4 535 70.7
arahy.Tifrunner.gnm1.ann1.FDTJ9Q Arachis hypogaea HOM05D003926 ORTHO05D005273 1.6e-206 723.0 535 70.5
ClCG11G004990 Citrullus lanatus HOM05D003926 ORTHO05D005273 1.4e-205 719.9 535 69.5
Phvul.008G025700 Phaseolus vulgaris HOM05D003926 ORTHO05D005273 2.4e-205 719.2 535 70.8
PGR004G0818 Punica granatum HOM05D003926 ORTHO05D005273 5.3e-205 718.0 535 69.9
SGA_v2.0_scaffold52G19072 Striga asiatica HOM05D003926 ORTHO05D005273 9.0e-205 717.2 535 69.3
Duzib211G0130 Durio zibethinus HOM05D003926 ORTHO05D005273 1.2e-204 716.8 535 70.8
Lalb_Chr21g0318281 Lupinus albus HOM05D003926 ORTHO05D005273 4.5e-204 714.9 535 69.0
MELO3C022053.2 Cucumis melo HOM05D003926 ORTHO05D005273 3.8e-203 711.8 535 68.6
CsaV3_5G038720 Cucumis sativus L. HOM05D003926 ORTHO05D005273 7.2e-202 707.6 535 68.6
Sed0020046 Sechium edule HOM05D003926 ORTHO05D005273 3.6e-201 705.3 535 69.2
ATR0691G267 Amborella trichopoda HOM05D003926 ORTHO05D005273 4.1e-197 691.8 537 66.9
Aqoxy3G03752 Aquilegia oxysepala HOM05D003926 ORTHO05D005273 1.9e-194 682.9 537 67.6
Sc14g0004890 Simmondsia chinensis HOM05D003926 ORTHO05D005273 2.6e-191 672.5 535 66.0
THA.LOC104802985 Tarenaya hassleriana HOM05D003926 ORTHO05D005273 1.2e-188 663.7 535 65.6
Lalb_Chr06g0174881 Lupinus albus HOM05D003926 ORTHO05D005273 7.7e-188 661.0 535 64.7
Aa31LG5G12790 Aethionema arabicum HOM05D003926 ORTHO05D005273 5.0e-187 658.3 535 65.8
ATR1101G059 Amborella trichopoda HOM05D003926 ORTHO05D005273 4.2e-186 655.2 537 64.6
CARHR076230 Cardamine hirsuta HOM05D003926 ORTHO05D005273 9.4e-186 654.1 535 65.4
AL3G11530 Arabidopsis lyrata HOM05D003926 ORTHO05D005273 4.7e-185 651.7 535 65.2
GSVIVG01036538001 Vitis vinifera HOM05D003926 ORTHO05D005273 4.7e-185 651.7 535 66.7
Thhalv10019869m.g Eutrema salsugineum HOM05D003926 ORTHO05D005273 8.0e-185 651.0 535 65.0
AT3G02260 Arabidopsis thaliana HOM05D003926 ORTHO05D005273 2.0e-183 646.4 535 64.5
C09p75640 Brassica napus HOM05D003926 ORTHO05D005273 8.2e-182 641.0 535 64.7
Carub.0003s0138 Capsella rubella HOM05D003926 ORTHO05D005273 1.4e-181 640.2 536 64.7
A05p45150 Brassica napus HOM05D003926 ORTHO05D005273 2.4e-181 639.4 535 64.5
BolC5t35094H Brassica oleracea HOM05D003926 ORTHO05D005273 2.4e-181 639.4 535 64.5
Sp3g01330 Schrenkiella parvula HOM05D003926 ORTHO05D005273 1.6e-180 636.7 535 63.9
BraA05t23147Z Brassica rapa HOM05D003926 ORTHO05D005273 1.3e-179 633.6 550 62.7
Os09g0247700 Oryza sativa ssp. japonica HOM05D003926 ORTHO05D005273 2.2e-179 632.9 537 60.3
Zm00001eb308350 Zea mays HOM05D003926 ORTHO05D005273 1.0e-176 624.0 535 58.9
Peaxi162Scf00020g02342 Petunia axillaris HOM05D003926 ORTHO05D005273 5.7e-175 618.2 537 64.1
CDE01G0304 Ceratophyllum demersum HOM05D003926 ORTHO05D005273 1.8e-173 613.2 540 59.3
BcaC05g30341 Brassica carinata HOM05D003926 ORTHO05D005273 5.2e-168 595.1 498 65.7
SEGI_07483 Sequoiadendron giganteum HOM05D003926 ORTHO05D005273 6.1e-161 571.6 539 55.3
Mapoly0031s0115 Marchantia polymorpha HOM05D003926 ORTHO05D005273 3.0e-147 526.2 548 53.1
Gohir.A07G179100 Gossypium hirsutum HOM05D003926 ORTHO05D005273 7.5e-143 511.5 527 55.8
Pp3c11_22340 Physcomitrium patens HOM05D003926 ORTHO05D005273 1.7e-139 500.4 545 50.8
Pp3c7_7030 Physcomitrium patens HOM05D003926 ORTHO05D005273 2.8e-137 493.0 545 48.6
vmacro05610 Vaccinium macrocarpon HOM05D003926 ORTHO05D005273 1.1e-133 481.1 330 78.5
SMO361G0659 Selaginella moellendorffii HOM05D003926 ORTHO05D005273 7.1e-125 451.8 554 47.8
Dinv33869 Davidia involucrata HOM05D003926 ORTHO05D005273 6.9e-120 435.3 368 68.5
vmacro05611 Vaccinium macrocarpon HOM05D003926 ORTHO05D005273 6.0e-116 422.2 268 82.8
AagrBONN_evm.TU.Sc2ySwM_344.3761 Anthoceros agrestis HOM05D003926 ORTHO05D005273 2.4e-112 410.2 546 45.4
Actinidia36271 Actinidia chinensis HOM05D003926 ORTHO05D005273 6.0e-108 395.6 261 80.5
Eucgr.I02068 Eucalyptus grandis HOM05D003926 ORTHO05D005273 3.7e-97 359.8 273 68.5
SHI25820 Sapria himalayana HOM05D003926 ORTHO05D005273 2.0e-87 327.4 396 51.0
CBR_g24086 Chara braunii HOM05D003926 ORTHO05D000048 7.7e-87 325.5 536 37.3
CSS0003920 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 9.7e-82 308.5 190 77.9
PGSC0003DMG401001381 Solanum tuberosum HOM05D003926 ORTHO05D005273 1.5e-79 301.2 187 76.5
Nitab4.5_0009887g0010 Nicotiana tabacum HOM05D003926 ORTHO05D005273 2.6e-79 300.4 216 71.8
Nitab4.5_0001339g0050 Nicotiana tabacum HOM05D003926 ORTHO05D005273 3.4e-79 300.1 217 71.9
Gohir.D07G186000 Gossypium hirsutum HOM05D003926 ORTHO05D005273 8.8e-75 285.4 185 73.0
CSS0037899 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 1.5e-74 284.6 196 73.5
Gohir.A07G178700 Gossypium hirsutum HOM05D003926 ORTHO05D005273 2.0e-74 284.3 185 73.0
Dinv33870 Davidia involucrata HOM05D003926 ORTHO05D005273 1.2e-71 275.0 155 83.2
CSS0007096 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 1.7e-70 271.2 196 70.9
CSS0009757 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 7.2e-69 265.8 196 68.9
CSS0026086 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 4.5e-63 246.5 197 66.5
Psat4g186360 Pisum sativum HOM05D003926 ORTHO05D005273 7.7e-63 245.7 155 74.2
Psat6g077960 Pisum sativum HOM05D003926 ORTHO05D005273 6.8e-59 232.6 185 65.4
HPP92_020588 Vanilla planifolia HOM05D003926 ORTHO05D005273 6.8e-51 206.1 140 72.1
Psat3g106080 Pisum sativum HOM05D003926 ORTHO05D005273 3.3e-45 187.2 134 67.9
Psat2g110320 Pisum sativum HOM05D003492 ORTHO05D005115 1.6e-31 141.7 135 57.0
Psat5g059720 Pisum sativum HOM05D000434 ORTHO05D007220 3.7e-25 120.6 192 40.1
Psat7g201680 Pisum sativum HOM05D003926 ORTHO05D005273 5.2e-19 100.1 84 57.1
Psat1g100800 Pisum sativum HOM05D003926 ORTHO05D005273 6.4e-17 93.2 82 54.9
Psat7g201760 Pisum sativum HOM05D003926 ORTHO05D005273 8.4e-17 92.8 83 54.2
SHI25822 Sapria himalayana HOM05D003926 ORTHO05D005273 1.1e-13 82.4 102 43.1
Psat2g086480 Pisum sativum HOM05D003926 ORTHO05D005273 6.4e-09 66.6 46 67.4
Psat7g240480 Pisum sativum HOM05D000029 ORTHO05D037355 1.1e-08 65.9 50 68.0
Pp3c22_5030 Physcomitrium patens HOM05D000005 ORTHO05D000239 1.9e-08 65.1 124 31.5
Carub.0001s1645 Capsella rubella HOM05D000912 ORTHO05D001232 2.1e-07 61.6 111 33.3
AL1G28880 Arabidopsis lyrata HOM05D000912 ORTHO05D001232 3.5e-07 60.8 112 32.1
Pp3c10_21693 Physcomitrium patens HOM05D000005 ORTHO05D000239 4.6e-07 60.5 98 36.7
Psat1g150120 Pisum sativum HOM05D003313 ORTHO05D004217 7.8e-07 59.7 36 72.2
Thhalv10006544m.g Eutrema salsugineum HOM05D000912 ORTHO05D001232 1.0e-06 59.3 112 31.2
AT1G55970 Arabidopsis thaliana HOM05D000912 ORTHO05D001232 1.7e-06 58.5 76 32.9
Sp1g14860 Schrenkiella parvula HOM05D000912 ORTHO05D001232 2.3e-06 58.2 123 30.1
MCO11G572 Micromonas commoda HOM05D003926 ORTHO05D005273 3.0e-06 57.8 60 41.7
Nitab4.5_0003699g0060 Nicotiana tabacum HOM05D000912 ORTHO05D001232 3.0e-06 57.8 97 30.9
Pp3c10_21680 Physcomitrium patens HOM05D000005 ORTHO05D000239 3.0e-06 57.8 62 40.3
MCO12G165 Micromonas commoda HOM05D002596 ORTHO05D002851 3.9e-06 57.4 61 42.6
C08p17500 Brassica napus HOM05D000912 ORTHO05D001232 5.1e-06 57.0 112 30.4
BolC8t49377H Brassica oleracea HOM05D000912 ORTHO05D001232 5.1e-06 57.0 112 30.4
AT1G16710 Arabidopsis thaliana HOM05D000912 ORTHO05D001232 6.6e-06 56.6 112 33.0
BcaC07g38809 Brassica carinata HOM05D000912 ORTHO05D001232 8.7e-06 56.2 112 30.4
A08p31320 Brassica napus HOM05D000912 ORTHO05D001232 8.7e-06 56.2 112 30.4
BraA08t35055Z Brassica rapa HOM05D000912 ORTHO05D001232 8.7e-06 56.2 112 30.4
Thhalv10019887m.g Eutrema salsugineum HOM05D000912 ORTHO05D001232 8.7e-06 56.2 100 30.0
THA.LOC104812346 Tarenaya hassleriana HOM05D000912 ORTHO05D001232 8.7e-06 56.2 98 32.7


User provided reference genes

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