Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0167300 Rhododendron simsii HOM05D005984 ORTHO05D007754 7.8e-233 810.1 401 100.0
vmacro08597 Vaccinium macrocarpon HOM05D005984 ORTHO05D007754 1.0e-179 633.6 422 80.1
CSS0012805 Camellia sinensis var. sinensis HOM05D005984 ORTHO05D007754 9.4e-178 627.1 425 75.5
TAR629G1998 Trochodendron aralioides HOM05D005984 ORTHO05D007754 9.4e-178 627.1 366 84.7
Actinidia38413 Actinidia chinensis HOM05D005984 ORTHO05D007754 2.1e-177 625.9 415 78.3
Actinidia13710 Actinidia chinensis HOM05D005984 ORTHO05D007754 2.5e-175 619.0 419 76.8
GSVIVG01012045001 Vitis vinifera HOM05D005984 ORTHO05D007754 1.3e-174 616.7 359 84.4
Aqoxy3G04258 Aquilegia oxysepala HOM05D005984 ORTHO05D007754 1.1e-173 613.6 402 77.6
CsaV3_7G030600 Cucumis sativus L. HOM05D005984 ORTHO05D007754 1.1e-173 613.6 421 74.3
MD13G1005900 Malus domestica HOM05D005984 ORTHO05D007754 2.4e-173 612.5 417 74.3
Cpa.g.sc44.38 Carica papaya HOM05D005984 ORTHO05D007754 3.1e-173 612.1 388 78.4
ClCG09G004540 Citrullus lanatus HOM05D005984 ORTHO05D007754 3.1e-173 612.1 359 83.0
TWI53G1952 Tripterygium wilfordii HOM05D005984 ORTHO05D007754 4.1e-173 611.7 379 80.2
Gorai.005G210500 Gossypium raimondii HOM05D005984 ORTHO05D007754 5.3e-173 611.3 378 79.9
Gohir.D02G187800 Gossypium hirsutum HOM05D005984 ORTHO05D007754 9.1e-173 610.5 378 79.9
PSO063G6567 Papaver somniferum HOM05D005984 ORTHO05D007754 1.5e-172 609.8 357 83.2
ATR0618G114 Amborella trichopoda HOM05D005984 ORTHO05D007754 2.0e-172 609.4 359 83.3
PSO782G0234 Papaver somniferum HOM05D005984 ORTHO05D007754 3.4e-172 608.6 357 82.9
Glyma.11G100800 Glycine max HOM05D005984 ORTHO05D007754 4.5e-172 608.2 358 84.4
Medtr4g075040 Medicago truncatula HOM05D005984 ORTHO05D007754 4.5e-172 608.2 384 79.7
CAN.G157.24 Capsicum annuum HOM05D005984 ORTHO05D007754 5.9e-172 607.8 380 79.5
arahy.Tifrunner.gnm1.ann1.0C6YUW Arachis hypogaea HOM05D005984 ORTHO05D007754 7.7e-172 607.4 422 74.4
CiPaw.06G060100 Carya illinoinensis HOM05D005984 ORTHO05D007754 7.7e-172 607.4 415 74.9
TPR.G32343 Trifolium pratense HOM05D005984 ORTHO05D007754 7.7e-172 607.4 384 79.4
Glyma.12G026900 Glycine max HOM05D005984 ORTHO05D007754 1.0e-171 607.1 359 84.1
Gohir.A03G164600 Gossypium hirsutum HOM05D005984 ORTHO05D007754 1.0e-171 607.1 378 79.6
Hma1.2p1_0122F.1_g057600 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 1.0e-171 607.1 420 74.5
arahy.Tifrunner.gnm1.ann1.B6F48P Arachis hypogaea HOM05D005984 ORTHO05D007754 3.8e-171 605.1 426 73.0
Thecc.02G160200 Theobroma cacao HOM05D005984 ORTHO05D007754 5.0e-171 604.7 414 74.9
Sed0006813 Sechium edule HOM05D005984 ORTHO05D007754 6.5e-171 604.4 367 80.7
VMungo1127G1047 Vigna mungo HOM05D005984 ORTHO05D007754 6.5e-171 604.4 358 83.2
Ca_19021_v3 Cicer arietinum L. HOM05D005984 ORTHO05D007754 8.5e-171 604.0 402 76.9
Cfa008738 Carpinus fangiana HOM05D005984 ORTHO05D007754 1.1e-170 603.6 395 77.2
Phvul.011G029800 Phaseolus vulgaris HOM05D005984 ORTHO05D007754 2.5e-170 602.4 358 83.0
PGR044G2022 Punica granatum HOM05D005984 ORTHO05D007754 2.5e-170 602.4 364 81.0
THA.LOC104800911 Tarenaya hassleriana HOM05D005984 ORTHO05D007754 3.2e-170 602.1 358 83.0
VMungo0647G2306 Vigna mungo HOM05D005984 ORTHO05D007754 4.2e-170 601.7 369 81.3
Cc11_g02280 Coffea canephora HOM05D005984 ORTHO05D007754 5.5e-170 601.3 416 73.8
DCAR_002576 Daucus carota HOM05D005984 ORTHO05D007754 7.2e-170 600.9 389 78.7
Psat7g177360 Pisum sativum HOM05D005984 ORTHO05D007754 9.4e-170 600.5 414 74.2
Sopen02g003530 Solanum pennellii HOM05D005984 ORTHO05D007754 2.7e-169 599.0 384 77.9
PGSC0003DMG400002324 Solanum tuberosum HOM05D005984 ORTHO05D007754 3.6e-169 598.6 382 78.3
Duzib052G0297 Durio zibethinus HOM05D005984 ORTHO05D007754 5.1e-168 594.7 357 80.7
A03p46390 Brassica napus HOM05D005984 ORTHO05D007754 9.7e-167 590.5 358 80.4
C07p44410 Brassica napus HOM05D005984 ORTHO05D007754 9.7e-167 590.5 358 80.4
BraA03t13765Z Brassica rapa HOM05D005984 ORTHO05D007754 9.7e-167 590.5 358 80.4
Sabra07G0060100 Salix brachista HOM05D005984 ORTHO05D007754 9.7e-167 590.5 374 77.8
Thhalv10004338m.g Eutrema salsugineum HOM05D005984 ORTHO05D007754 1.3e-166 590.1 356 80.3
Potri.007G071300 Populus trichocarpa HOM05D005984 ORTHO05D007754 1.7e-166 589.7 374 78.1
BolC7t44963H Brassica oleracea HOM05D005984 ORTHO05D007754 2.8e-166 589.0 358 80.2
Carub.0006s2091 Capsella rubella HOM05D005984 ORTHO05D007754 4.8e-166 588.2 361 79.5
Lj3A850G95 Lonicera japonica HOM05D005984 ORTHO05D007754 1.4e-165 586.6 439 70.4
Os06g0729650 Oryza sativa ssp. japonica HOM05D005984 ORTHO05D007754 3.1e-165 585.5 361 79.5
AT5G23120 Arabidopsis thaliana HOM05D005984 ORTHO05D007754 5.3e-165 584.7 356 80.1
MSTRG.431 Avicennia marina HOM05D005984 ORTHO05D007754 5.3e-165 584.7 405 73.8
COL.COLO4_19602 Corchorus olitorius HOM05D005984 ORTHO05D007754 9.1e-165 583.9 398 74.6
Dinv11718 Davidia involucrata HOM05D005984 ORTHO05D007754 1.6e-164 583.2 423 72.8
FAN12G1392 Fragaria x ananassa HOM05D005984 ORTHO05D007754 1.6e-164 583.2 418 73.2
Zm00001eb271820 Zea mays HOM05D005984 ORTHO05D007754 1.6e-164 583.2 383 75.7
Haze_11755 Corylus avellana HOM05D005984 ORTHO05D007754 3.5e-164 582.0 386 76.9
HPP92_012878 Vanilla planifolia HOM05D005984 ORTHO05D007754 5.9e-164 581.3 360 79.2
Nn3g18651 Nelumbo nucifera HOM05D005984 ORTHO05D007754 7.7e-164 580.9 368 79.9
FvH4_4g36890 Fragaria vesca HOM05D005984 ORTHO05D007754 2.9e-163 578.9 419 73.0
RcHm_v2.0_Chr4g0446671 Rosa chinensis HOM05D005984 ORTHO05D007754 6.5e-163 577.8 414 72.5
MELO3C023596.2 Cucumis melo HOM05D005984 ORTHO05D007754 4.2e-162 575.1 371 77.9
Prupe.1G347100 Prunus persica HOM05D005984 ORTHO05D007754 1.2e-161 573.5 418 71.1
Hund08579 Selenicereus undatus HOM05D005984 ORTHO05D007754 1.6e-161 573.2 425 70.6
CANSAT56G2432 Cannabis sativa HOM05D005984 ORTHO05D007754 2.1e-161 572.8 414 72.0
FAN07G1379 Fragaria x ananassa HOM05D005984 ORTHO05D007754 1.8e-160 569.7 395 73.4
Ciclev10031672m.g Citrus clementina HOM05D005984 ORTHO05D007754 2.3e-160 569.3 372 77.4
CDE07G0658 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 3.0e-160 568.9 359 78.0
unitig_8.g2892 Utricularia gibba HOM05D005984 ORTHO05D007754 4.0e-160 568.5 401 71.6
Lj3g0024041 Lotus japonicus HOM05D005984 ORTHO05D007754 7.5e-159 564.3 379 75.5
MD16G1002000 Malus domestica HOM05D005984 ORTHO05D007754 9.7e-159 563.9 414 69.6
EL10Ac9g22946 Beta vulgaris HOM05D005984 ORTHO05D007754 1.3e-158 563.5 439 67.4
Sed0023953 Sechium edule HOM05D005984 ORTHO05D007754 6.3e-158 561.2 414 70.3
Solyc02g014150.4 Solanum lycopersicum HOM05D005984 ORTHO05D007754 8.2e-158 560.8 361 77.6
Lalb_Chr03g0024761 Lupinus albus HOM05D005984 ORTHO05D007754 2.4e-157 559.3 359 77.7
Manes.11G108100 Manihot esculenta HOM05D005984 ORTHO05D007754 2.4e-157 559.3 356 78.4
ECA246G1868 Erigeron canadensis HOM05D005984 ORTHO05D007754 4.1e-157 558.5 361 77.0
Lsat_1_v5_gn_3_35480 Lactuca sativa HOM05D005984 ORTHO05D007754 9.1e-157 557.4 378 74.1
QL03p045967 Quercus lobata HOM05D005984 ORTHO05D007754 2.0e-156 556.2 467 63.2
Manes.04G064200 Manihot esculenta HOM05D005984 ORTHO05D007754 4.5e-156 555.1 356 77.5
AL6G34310 Arabidopsis lyrata HOM05D005984 ORTHO05D007754 5.0e-155 551.6 389 71.7
Eucgr.J00865 Eucalyptus grandis HOM05D005984 ORTHO05D007754 5.0e-155 551.6 354 76.8
AUR62017696 Chenopodium quinoa HOM05D005984 ORTHO05D007754 3.2e-154 548.9 355 76.6
Sp2g24000 Schrenkiella parvula HOM05D005984 ORTHO05D007754 3.2e-154 548.9 358 76.0
Migut.E00699 Erythranthe guttata HOM05D005984 ORTHO05D007754 4.2e-154 548.5 358 76.3
Atru.chr11.1117 Acer truncatum HOM05D005984 ORTHO05D007754 1.6e-153 546.6 404 69.6
Sc10g0006780 Simmondsia chinensis HOM05D005984 ORTHO05D007754 2.1e-153 546.2 341 81.2
Aa31LG11G2610 Aethionema arabicum HOM05D005984 ORTHO05D007754 1.4e-152 543.5 358 75.1
CARHR190410 Cardamine hirsuta HOM05D005984 ORTHO05D007754 2.3e-152 542.7 358 75.4
AUR62015232 Chenopodium quinoa HOM05D005984 ORTHO05D007754 1.5e-151 540.0 323 81.1
AUR62015234 Chenopodium quinoa HOM05D005984 ORTHO05D007754 1.5e-151 540.0 323 81.1
SGA_v2.0_scaffold88G27230 Striga asiatica HOM05D005984 ORTHO05D007754 1.8e-149 533.1 377 72.4
Oeu026903.3 Olea europaea HOM05D005984 ORTHO05D007754 5.4e-149 531.6 408 68.6
Ah.01g001560 Amaranthus hybridus HOM05D005984 ORTHO05D007754 9.1e-149 530.8 401 70.3
SMO347G0352 Selaginella moellendorffii HOM05D005984 ORTHO05D007754 7.7e-148 527.7 392 66.8
HanXRQChr17g0544921 Helianthus annuus HOM05D005984 ORTHO05D007754 1.9e-146 523.1 346 75.1
SalBow2G1456 Salvia bowleyana HOM05D005984 ORTHO05D007754 5.7e-143 511.5 470 59.1
HanXRQChr06g0171511 Helianthus annuus HOM05D005984 ORTHO05D007754 1.3e-142 510.4 337 76.3
Nitab4.5_0000133g0050 Nicotiana tabacum HOM05D005984 ORTHO05D007754 2.0e-140 503.1 531 53.7
Mapoly0020s0149 Marchantia polymorpha HOM05D005984 ORTHO05D007754 8.6e-139 497.7 361 66.8
Nitab4.5_0006277g0020 Nicotiana tabacum HOM05D005984 ORTHO05D007754 9.5e-138 494.2 562 51.4
Pp3c15_7930 Physcomitrium patens HOM05D005984 ORTHO05D007754 2.8e-137 492.7 360 70.0
Pp3c9_10350 Physcomitrium patens HOM05D005984 ORTHO05D007754 1.3e-134 483.8 359 69.4
CDE04G0799 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 2.7e-132 476.1 359 68.5
Peaxi162Scf00363g00317 Petunia axillaris HOM05D005984 ORTHO05D007754 8.0e-129 464.5 487 53.8
FAN17G0887 Fragaria x ananassa HOM05D005984 ORTHO05D007754 4.3e-114 415.6 445 55.5
CBR_g11122 Chara braunii HOM05D005984 ORTHO05D007754 1.1e-112 411.0 387 54.3
AagrBONN_evm.TU.Sc2ySwM_369.365 Anthoceros agrestis HOM05D005984 ORTHO05D007754 2.9e-110 402.9 336 61.6
Cre06.g273700 Chlamydomonas reinhardtii HOM05D005984 ORTHO05D007754 2.4e-104 383.3 362 55.2
MCO05G498 Micromonas commoda HOM05D005984 ORTHO05D007754 2.9e-102 376.3 402 49.0
Hma1.2p1_0122F.1_g057590 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 2.4e-101 373.2 195 89.2
Dinv01185 Davidia involucrata HOM05D005984 ORTHO05D007754 3.3e-98 362.8 203 87.7
PRCOL_00000217 Prasinoderma coloniale HOM05D005984 ORTHO05D007754 4.1e-72 276.2 291 48.5
MD15G1106700 Malus domestica HOM05D005984 ORTHO05D007754 8.8e-59 231.9 114 94.7
SEGI_34707 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 6.3e-57 225.7 122 86.1
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 9.1e-56 221.9 371 36.7
C09p07860 Brassica napus HOM05D005984 ORTHO05D007754 3.1e-48 196.8 169 63.3
MD00G1043400 Malus domestica HOM05D005984 ORTHO05D007754 3.8e-46 189.9 98 89.8
BcaB04g19886 Brassica carinata HOM05D005984 ORTHO05D007754 9.7e-42 175.3 198 53.0
C09p07870 Brassica napus HOM05D005984 ORTHO05D042888 7.0e-32 142.5 103 67.0
AUR62024854 Chenopodium quinoa HOM05D005984 ORTHO05D007754 4.2e-29 133.3 110 64.5
HanXRQChr10g0318441 Helianthus annuus HOM05D005984 ORTHO05D007754 6.6e-22 109.4 69 75.4
BolC9t53702H Brassica oleracea HOM05D005984 ORTHO05D042888 1.5e-21 108.2 80 66.2
arahy.Tifrunner.gnm1.ann1.25R2K9 Arachis hypogaea HOM05D005984 ORTHO05D014444 3.2e-16 90.5 85 54.1
arahy.Tifrunner.gnm1.ann1.B9R6EW Arachis hypogaea HOM05D005984 ORTHO05D014444 1.2e-15 88.6 84 53.6
Zm00001eb227280 Zea mays HOM05D005984 ORTHO05D007754 6.2e-12 76.3 62 59.7
Glyma.01G000174 Glycine max HOM05D036214 ORTHO05D007754 1.2e-10 72.0 43 79.1
Glyma.06G237300 Glycine max HOM05D005984 ORTHO05D007754 1.2e-10 72.0 71 57.7
MBI03_g15323_MAGBIO Magnolia biondii HOM05D002934 ORTHO05D003937 1.2e-10 72.0 31 90.3
SEGI_27749 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 9.8e-10 68.9 53 62.3
SGA_v2.0_scaffold57G20111 Striga asiatica HOM05D005984 ORTHO05D402503 7.8e-07 59.3 39 66.7


User provided reference genes

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