Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0119100 Rhododendron simsii HOM05D004558 ORTHO05D005647 5.6e-226 787.3 412 100.0
Rhsim04G0119000 Rhododendron simsii HOM05D004558 ORTHO05D005647 4.4e-223 777.7 426 96.7
vmacro08967 Vaccinium macrocarpon HOM05D004558 ORTHO05D005647 8.0e-217 756.9 413 96.6
ClCG04G004930 Citrullus lanatus HOM05D004558 ORTHO05D005647 1.4e-200 703.0 410 86.6
Aqoxy2G00035_Aqoxy2G00036 Aquilegia oxysepala HOM05D004558 ORTHO05D005647 5.8e-199 697.6 410 84.6
Sed0025713 Sechium edule HOM05D004558 ORTHO05D005647 9.9e-199 696.8 410 86.3
CsaV3_4G031720 Cucumis sativus L. HOM05D004558 ORTHO05D005647 1.3e-198 696.4 410 85.9
QL07p015188 Quercus lobata HOM05D004558 ORTHO05D005647 3.8e-198 694.9 409 87.5
TWI53G2040 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 3.8e-198 694.9 410 84.9
Lj1g0019045 Lotus japonicus HOM05D004558 ORTHO05D005647 8.4e-198 693.7 410 84.9
Thecc.05G130200 Theobroma cacao HOM05D004558 ORTHO05D005647 1.9e-197 692.6 410 84.6
TWI77G0093 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 4.2e-197 691.4 410 84.6
Cpa.g.sc92.57 Carica papaya HOM05D004558 ORTHO05D005647 9.3e-197 690.3 410 85.1
Potri.016G025000 Populus trichocarpa HOM05D004558 ORTHO05D005647 1.2e-196 689.9 410 85.1
Potri.006G027300 Populus trichocarpa HOM05D004558 ORTHO05D005647 1.6e-196 689.5 410 85.6
Cfa019915 Carpinus fangiana HOM05D004558 ORTHO05D005647 4.6e-196 688.0 410 83.9
arahy.Tifrunner.gnm1.ann1.XE2WF0 Arachis hypogaea HOM05D004558 ORTHO05D005647 2.3e-195 685.6 411 87.3
arahy.Tifrunner.gnm1.ann1.VDKY5W Arachis hypogaea HOM05D004558 ORTHO05D005647 3.0e-195 685.3 410 84.9
CiPaw.09G162600 Carya illinoinensis HOM05D004558 ORTHO05D005647 3.0e-195 685.3 410 83.7
TPR.G23197 Trifolium pratense HOM05D004558 ORTHO05D005647 3.0e-195 685.3 410 84.6
THA.LOC104824384 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 3.9e-195 684.9 410 84.1
Duzib128G1152 Durio zibethinus HOM05D004558 ORTHO05D005647 5.1e-195 684.5 410 82.7
Sabra16G0030900 Salix brachista HOM05D004558 ORTHO05D005647 5.1e-195 684.5 411 83.9
CSS0026074 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 6.6e-195 684.1 352 94.3
CSS0045826 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 6.6e-195 684.1 352 94.3
Actinidia00883 Actinidia chinensis HOM05D004558 ORTHO05D005647 8.7e-195 683.7 351 94.0
Duzib093G1273 Durio zibethinus HOM05D004558 ORTHO05D005647 8.7e-195 683.7 410 83.4
Nitab4.5_0000123g0170 Nicotiana tabacum HOM05D004558 ORTHO05D005647 8.7e-195 683.7 414 84.1
Phvul.001G108700 Phaseolus vulgaris HOM05D004558 ORTHO05D005647 8.7e-195 683.7 409 85.1
Haze_20335 Corylus avellana HOM05D004558 ORTHO05D005647 1.5e-194 682.9 408 83.6
Glyma.03G119500 Glycine max HOM05D004558 ORTHO05D005647 1.5e-194 682.9 413 85.2
TAR369G0680 Trochodendron aralioides HOM05D004558 ORTHO05D005647 1.9e-194 682.6 409 84.6
Actinidia38207 Actinidia chinensis HOM05D004558 ORTHO05D005647 3.3e-194 681.8 351 94.0
Nitab4.5_0001270g0120 Nicotiana tabacum HOM05D004558 ORTHO05D005647 3.3e-194 681.8 414 83.8
AUR62020990 Chenopodium quinoa HOM05D004558 ORTHO05D005647 4.3e-194 681.4 412 83.5
FAN19G1019 Fragaria x ananassa HOM05D004558 ORTHO05D005647 4.3e-194 681.4 411 84.7
FAN23G1063 Fragaria x ananassa HOM05D004558 ORTHO05D005647 4.3e-194 681.4 411 84.7
Sabra06G0020200 Salix brachista HOM05D004558 ORTHO05D005647 4.3e-194 681.4 410 84.1
Aa31LG10G11840 Aethionema arabicum HOM05D004558 ORTHO05D005647 5.6e-194 681.0 410 83.9
VMungo1383G3341 Vigna mungo HOM05D004558 ORTHO05D005647 7.3e-194 680.6 410 84.4
THA.LOC104803235 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 9.6e-194 680.2 410 82.4
MBI13_g30268_MAGBIO Magnolia biondii HOM05D004558 ORTHO05D005647 1.3e-193 679.9 410 83.4
FvH4_1g28960 Fragaria vesca HOM05D004558 ORTHO05D005647 1.6e-193 679.5 411 84.4
FAN28G2842 Fragaria x ananassa HOM05D004558 ORTHO05D005647 1.6e-193 679.5 411 84.4
Manes.09G073800 Manihot esculenta HOM05D004558 ORTHO05D005647 1.6e-193 679.5 410 84.1
RcHm_v2.0_Chr3g0494361 Rosa chinensis HOM05D004558 ORTHO05D005647 1.6e-193 679.5 411 83.9
A09p49810 Brassica napus HOM05D004558 ORTHO05D005647 2.8e-193 678.7 409 85.3
BraA09t40434Z Brassica rapa HOM05D004558 ORTHO05D005647 2.8e-193 678.7 409 85.3
AUR62018443 Chenopodium quinoa HOM05D004558 ORTHO05D005647 2.8e-193 678.7 410 83.2
Carub.0005s2368 Capsella rubella HOM05D004558 ORTHO05D005647 3.6e-193 678.3 410 84.6
Cc06_g22740 Coffea canephora HOM05D004558 ORTHO05D005647 3.6e-193 678.3 418 82.3
Thhalv10006009m.g Eutrema salsugineum HOM05D004558 ORTHO05D005647 3.6e-193 678.3 410 84.1
Gohir.A01G192400 Gossypium hirsutum HOM05D004558 ORTHO05D005647 3.6e-193 678.3 410 82.9
Gohir.D01G177500 Gossypium hirsutum HOM05D004558 ORTHO05D005647 4.8e-193 677.9 410 86.1
TAR546G0001 Trochodendron aralioides HOM05D004558 ORTHO05D005647 4.8e-193 677.9 410 83.2
Ciclev10011842m.g Citrus clementina HOM05D004558 ORTHO05D005647 6.2e-193 677.6 418 82.3
FAN26G0634 Fragaria x ananassa HOM05D004558 ORTHO05D005647 6.2e-193 677.6 411 84.2
Lalb_Chr14g0365301 Lupinus albus HOM05D004558 ORTHO05D005647 8.1e-193 677.2 410 82.2
BcaB02g07634 Brassica carinata HOM05D004558 ORTHO05D005647 1.8e-192 676.0 410 84.1
BcaC07g40007 Brassica carinata HOM05D004558 ORTHO05D005647 1.8e-192 676.0 409 82.9
BcaC08g44811 Brassica carinata HOM05D004558 ORTHO05D005647 2.4e-192 675.6 410 83.4
BolC6t37555H Brassica oleracea HOM05D004558 ORTHO05D005647 2.4e-192 675.6 410 83.7
BraA07t29976Z Brassica rapa HOM05D004558 ORTHO05D005647 3.1e-192 675.2 410 83.4
A07p23140 Brassica napus HOM05D004558 ORTHO05D005647 9.0e-192 673.7 410 83.2
Prupe.7G022500 Prunus persica HOM05D004558 ORTHO05D005647 9.0e-192 673.7 352 93.2
AL5G38370 Arabidopsis lyrata HOM05D004558 ORTHO05D005647 1.2e-191 673.3 410 85.6
PSO384G3158 Papaver somniferum HOM05D004558 ORTHO05D005647 1.2e-191 673.3 410 81.7
Eucgr.A02177 Eucalyptus grandis HOM05D004558 ORTHO05D005647 2.6e-191 672.2 410 82.4
PSO339G0825 Papaver somniferum HOM05D004558 ORTHO05D005647 2.6e-191 672.2 410 82.0
SGA_v2.0_scaffold66G22316 Striga asiatica HOM05D004558 ORTHO05D005647 2.6e-191 672.2 410 81.7
Hma1.2p1_0251F.1_g102500 Hydrangea macrophylla HOM05D004558 ORTHO05D005647 4.4e-191 671.4 352 92.3
Sc19g0007850 Simmondsia chinensis HOM05D004558 ORTHO05D005647 4.4e-191 671.4 350 92.6
BcaC07g40105 Brassica carinata HOM05D004558 ORTHO05D005647 5.8e-191 671.0 409 84.1
PGSC0003DMG400007188 Solanum tuberosum HOM05D004558 ORTHO05D005647 5.8e-191 671.0 411 84.7
CANSAT78G1575 Cannabis sativa HOM05D004558 ORTHO05D005647 1.3e-190 669.8 411 85.4
CARHR167090 Cardamine hirsuta HOM05D004558 ORTHO05D005647 1.3e-190 669.8 410 83.2
SEGI_29193 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 1.3e-190 669.8 352 91.8
Sopen10g028720 Solanum pennellii HOM05D004558 ORTHO05D005647 1.7e-190 669.5 411 84.4
Gorai.002G225700 Gossypium raimondii HOM05D004558 ORTHO05D005647 2.2e-190 669.1 419 84.2
Medtr7g088340 Medicago truncatula HOM05D004558 ORTHO05D005647 2.9e-190 668.7 410 86.6
GSVIVG01025841001 Vitis vinifera HOM05D004558 ORTHO05D005647 3.8e-190 668.3 350 93.1
Solyc10g077040.2 Solanum lycopersicum HOM05D004558 ORTHO05D005647 4.9e-190 667.9 411 84.2
ATR1096G103 Amborella trichopoda HOM05D004558 ORTHO05D005647 6.4e-190 667.5 415 81.9
CAN.G959.37 Capsicum annuum HOM05D004558 ORTHO05D005647 6.4e-190 667.5 410 84.9
MSTRG.6287 Avicennia marina HOM05D004558 ORTHO05D005647 8.4e-190 667.2 410 85.9
Hund24509 Selenicereus undatus HOM05D004558 ORTHO05D005647 1.9e-189 666.0 350 92.6
Oeu060750.2 Olea europaea HOM05D004558 ORTHO05D005647 2.4e-189 665.6 420 80.7
CDE02G2354 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 9.3e-189 663.7 411 81.0
Migut.K00174 Erythranthe guttata HOM05D004558 ORTHO05D005647 9.3e-189 663.7 410 81.0
HPP92_000696 Vanilla planifolia HOM05D004558 ORTHO05D005647 1.6e-188 662.9 350 91.7
C06p23840 Brassica napus HOM05D004558 ORTHO05D005647 2.1e-188 662.5 414 82.1
ECA247G1747 Erigeron canadensis HOM05D004558 ORTHO05D005647 2.7e-188 662.1 418 80.4
PGR042G2423 Punica granatum HOM05D004558 ORTHO05D005647 2.7e-188 662.1 350 91.4
DCAR_013513 Daucus carota HOM05D004558 ORTHO05D005647 6.0e-188 661.0 410 81.2
Zm00001eb129000 Zea mays HOM05D004558 ORTHO05D005647 6.0e-188 661.0 350 91.4
Zm00001eb332650 Zea mays HOM05D004558 ORTHO05D005647 7.8e-188 660.6 350 91.4
Os01g0279100 Oryza sativa ssp. japonica HOM05D004558 ORTHO05D005647 2.3e-187 659.1 350 91.4
DCAR_016944 Daucus carota HOM05D004558 ORTHO05D005647 3.9e-187 658.3 352 90.3
Lj1A1078T64 Lonicera japonica HOM05D004558 ORTHO05D005647 6.6e-187 657.5 410 84.9
Sp5g05650 Schrenkiella parvula HOM05D004558 ORTHO05D005647 6.6e-187 657.5 385 86.2
unitig_46.g18485 Utricularia gibba HOM05D004558 ORTHO05D005647 1.9e-186 656.0 350 91.4
Oeu023011.1 Olea europaea HOM05D004558 ORTHO05D005647 2.5e-186 655.6 363 88.7
HanXRQChr10g0291961 Helianthus annuus HOM05D004558 ORTHO05D005647 1.3e-185 653.3 417 82.5
Lsat_1_v5_gn_9_30221 Lactuca sativa HOM05D004558 ORTHO05D005647 3.1e-184 648.7 413 80.6
Peaxi162Scf00003g05355 Petunia axillaris HOM05D004558 ORTHO05D005647 6.9e-184 647.5 432 78.0
Lalb_Chr24g0400681 Lupinus albus HOM05D004558 ORTHO05D005647 3.2e-181 638.6 410 76.6
AT3G56940 Arabidopsis thaliana HOM05D004558 ORTHO05D005647 7.9e-180 634.0 333 92.5
Mapoly0124s0017 Marchantia polymorpha HOM05D004558 ORTHO05D005647 4.8e-177 624.8 350 84.6
AagrBONN_evm.TU.Sc2ySwM_228.50 Anthoceros agrestis HOM05D004558 ORTHO05D005647 6.5e-174 614.4 349 83.4
SMO119G0375 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 2.5e-173 612.5 352 83.2
Pp3c11_7910 Physcomitrium patens HOM05D004558 ORTHO05D005647 7.9e-172 607.4 412 73.3
unitig_37.g12773 Utricularia gibba HOM05D004558 ORTHO05D005647 1.3e-171 606.7 317 92.4
CDE04G3757 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 1.3e-169 600.1 412 75.2
EL10Ac3g07349 Beta vulgaris HOM05D004558 ORTHO05D005647 1.4e-168 596.7 410 78.5
Atru.chr1.1539 Acer truncatum HOM05D004558 ORTHO05D005647 1.1e-157 560.5 340 85.9
SGA_v2.0_scaffold69G23196 Striga asiatica HOM05D004558 ORTHO05D005647 1.6e-156 556.6 403 71.2
Psat3g082520 Pisum sativum HOM05D004558 ORTHO05D005647 1.4e-149 533.5 324 87.0
Ca_08344_v3 Cicer arietinum L. HOM05D004558 ORTHO05D005647 9.4e-149 530.8 335 84.5
Cre12.g510050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 1.4e-147 526.9 356 70.2
PRCOL_00006479 Prasinoderma coloniale HOM05D004558 ORTHO05D005647 3.9e-147 525.4 352 71.6
Dinv11638 Davidia involucrata HOM05D004558 ORTHO05D005647 2.0e-146 523.1 262 95.0
Pp3c7_26570 Physcomitrium patens HOM05D004558 ORTHO05D005647 1.2e-140 503.8 262 90.8
HPP92_000650 Vanilla planifolia HOM05D004558 ORTHO05D005647 3.6e-140 502.3 254 93.7
MCO13G411 Micromonas commoda HOM05D004558 ORTHO05D005647 2.3e-139 499.6 344 70.9
Ah.04g150190 Amaranthus hybridus HOM05D004558 ORTHO05D005647 3.3e-138 495.7 410 65.6
SMO115G0161 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 2.9e-134 482.6 352 68.5
MELO3C026802.2 Cucumis melo HOM05D004558 ORTHO05D005647 1.8e-131 473.4 290 83.1
Cre07.g346050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 8.8e-131 471.1 340 66.5
Glyma.19G123800 Glycine max HOM05D004558 ORTHO05D005647 4.4e-130 468.8 301 83.1
SalBow6G0122 Salvia bowleyana HOM05D004558 ORTHO05D005647 1.5e-125 453.8 248 88.7
SalBow1G4785 Salvia bowleyana HOM05D004558 ORTHO05D005647 2.5e-117 426.4 285 75.8
CDE02G0342 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 7.5e-114 414.8 225 87.6
CBR_g50688 Chara braunii HOM05D004558 ORTHO05D005647 3.0e-102 376.3 228 78.5
Oeu021019.1 Olea europaea HOM05D004558 ORTHO05D005647 1.5e-93 347.4 322 59.3
BolC4t25242H Brassica oleracea HOM05D004558 ORTHO05D005647 1.1e-59 235.0 132 86.4
C04p35620 Brassica napus HOM05D004558 ORTHO05D005647 1.4e-59 234.6 132 85.6
CBR_g55376 Chara braunii HOM05D004558 ORTHO05D005647 1.2e-55 221.5 349 39.3
SEGI_05566 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 6.9e-51 205.7 118 83.9
SEGI_20922 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 1.5e-50 204.5 118 83.1
C08p32210 Brassica napus HOM05D004558 ORTHO05D005647 4.8e-44 183.0 104 87.5
A04p03620 Brassica napus HOM05D004558 ORTHO05D005647 2.4e-43 180.6 103 87.4
BraA04t16073Z Brassica rapa HOM05D004558 ORTHO05D005647 2.4e-43 180.6 103 87.4
BcaC02g09879 Brassica carinata HOM05D004558 ORTHO05D005647 8.8e-38 162.2 94 85.1
Pp3c2_30650 Physcomitrium patens HOM05D004558 ORTHO05D005647 1.8e-35 154.5 98 78.6
CDE02G4696 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 6.5e-33 146.0 94 77.7
BcaB02g08342 Brassica carinata HOM05D004558 ORTHO05D005647 4.4e-29 133.3 105 70.5
Ah.13g077400 Amaranthus hybridus HOM05D004558 ORTHO05D000435 3.1e-27 127.1 146 52.1
Lalb_Chr22g0357681 Lupinus albus HOM05D004558 ORTHO05D005647 1.1e-24 118.6 69 84.1
ClCG10G010310 Citrullus lanatus HOM05D004558 ORTHO05D005647 1.2e-23 115.2 71 71.8
AagrBONN_evm.TU.Sc2ySwM_368.2127 Anthoceros agrestis HOM05D004558 ORTHO05D005647 1.4e-22 111.7 69 78.3
ClCG10G010320 Citrullus lanatus HOM05D004558 ORTHO05D005647 1.4e-22 111.7 81 71.6
Lalb_Chr22g0358091 Lupinus albus HOM05D004558 ORTHO05D005647 1.1e-19 102.1 47 93.6
AagrBONN_evm.TU.Sc2ySwM_344.4282 Anthoceros agrestis HOM05D004558 ORTHO05D000003 5.3e-19 99.8 69 73.9
MD00G1107700 Malus domestica HOM05D004558 ORTHO05D005647 5.3e-19 99.8 62 80.6
SEGI_00644 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 7.5e-13 79.3 42 92.9
Lalb_Chr22g0358081 Lupinus albus HOM05D004558 ORTHO05D005647 3.1e-11 73.9 39 89.7
MSTRG.26191 Avicennia marina HOM05D004558 ORTHO05D087779 5.2e-06 56.6 53 56.6


User provided reference genes

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