Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0119000 Rhododendron simsii HOM05D004558 ORTHO05D005647 2.8e-233 811.6 426 100.0
Rhsim04G0119100 Rhododendron simsii HOM05D004558 ORTHO05D005647 7.8e-223 776.9 426 96.7
vmacro08967 Vaccinium macrocarpon HOM05D004558 ORTHO05D005647 1.1e-213 746.5 427 93.4
ClCG04G004930 Citrullus lanatus HOM05D004558 ORTHO05D005647 1.9e-197 692.6 424 83.7
Aqoxy2G00035_Aqoxy2G00036 Aquilegia oxysepala HOM05D004558 ORTHO05D005647 8.1e-196 687.2 424 81.8
Sed0025713 Sechium edule HOM05D004558 ORTHO05D005647 1.4e-195 686.4 424 83.5
CsaV3_4G031720 Cucumis sativus L. HOM05D004558 ORTHO05D005647 1.8e-195 686.0 424 83.0
QL07p015188 Quercus lobata HOM05D004558 ORTHO05D005647 5.2e-195 684.5 423 84.6
TWI53G2040 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 5.2e-195 684.5 424 82.1
Lj1g0019045 Lotus japonicus HOM05D004558 ORTHO05D005647 1.2e-194 683.3 424 82.1
Thecc.05G130200 Theobroma cacao HOM05D004558 ORTHO05D005647 2.6e-194 682.2 424 81.8
TWI77G0093 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 5.8e-194 681.0 424 81.8
Cpa.g.sc92.57 Carica papaya HOM05D004558 ORTHO05D005647 1.3e-193 679.9 424 82.3
Potri.016G025000 Populus trichocarpa HOM05D004558 ORTHO05D005647 1.7e-193 679.5 424 82.3
Potri.006G027300 Populus trichocarpa HOM05D004558 ORTHO05D005647 2.2e-193 679.1 424 82.8
Cfa019915 Carpinus fangiana HOM05D004558 ORTHO05D005647 6.4e-193 677.6 424 81.1
arahy.Tifrunner.gnm1.ann1.XE2WF0 Arachis hypogaea HOM05D004558 ORTHO05D005647 3.2e-192 675.2 425 84.5
TPR.G23197 Trifolium pratense HOM05D004558 ORTHO05D005647 3.2e-192 675.2 424 81.8
arahy.Tifrunner.gnm1.ann1.VDKY5W Arachis hypogaea HOM05D004558 ORTHO05D005647 4.2e-192 674.9 424 82.1
CiPaw.09G162600 Carya illinoinensis HOM05D004558 ORTHO05D005647 4.2e-192 674.9 424 80.9
THA.LOC104824384 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 5.4e-192 674.5 424 81.4
Duzib128G1152 Durio zibethinus HOM05D004558 ORTHO05D005647 7.1e-192 674.1 424 80.0
Sabra16G0030900 Salix brachista HOM05D004558 ORTHO05D005647 7.1e-192 674.1 425 81.2
CSS0026074 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 9.3e-192 673.7 366 90.7
CSS0045826 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 9.3e-192 673.7 366 90.7
Actinidia00883 Actinidia chinensis HOM05D004558 ORTHO05D005647 1.2e-191 673.3 365 90.4
Duzib093G1273 Durio zibethinus HOM05D004558 ORTHO05D005647 1.2e-191 673.3 424 80.7
Nitab4.5_0000123g0170 Nicotiana tabacum HOM05D004558 ORTHO05D005647 1.2e-191 673.3 428 81.3
Phvul.001G108700 Phaseolus vulgaris HOM05D004558 ORTHO05D005647 1.2e-191 673.3 423 82.3
Haze_20335 Corylus avellana HOM05D004558 ORTHO05D005647 1.6e-191 672.9 422 80.8
Glyma.03G119500 Glycine max HOM05D004558 ORTHO05D005647 1.6e-191 672.9 427 82.4
TAR369G0680 Trochodendron aralioides HOM05D004558 ORTHO05D005647 2.7e-191 672.2 423 81.8
Actinidia38207 Actinidia chinensis HOM05D004558 ORTHO05D005647 4.6e-191 671.4 365 90.4
FAN19G1019 Fragaria x ananassa HOM05D004558 ORTHO05D005647 4.6e-191 671.4 425 81.9
FAN23G1063 Fragaria x ananassa HOM05D004558 ORTHO05D005647 4.6e-191 671.4 425 81.9
Nitab4.5_0001270g0120 Nicotiana tabacum HOM05D004558 ORTHO05D005647 4.6e-191 671.4 428 81.1
Sabra06G0020200 Salix brachista HOM05D004558 ORTHO05D005647 4.6e-191 671.4 424 81.4
AUR62020990 Chenopodium quinoa HOM05D004558 ORTHO05D005647 6.0e-191 671.0 426 80.8
Aa31LG10G11840 Aethionema arabicum HOM05D004558 ORTHO05D005647 7.8e-191 670.6 424 81.1
VMungo1383G3341 Vigna mungo HOM05D004558 ORTHO05D005647 7.8e-191 670.6 424 81.6
THA.LOC104803235 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 1.3e-190 669.8 424 79.7
FvH4_1g28960 Fragaria vesca HOM05D004558 ORTHO05D005647 1.7e-190 669.5 425 81.6
FAN28G2842 Fragaria x ananassa HOM05D004558 ORTHO05D005647 1.7e-190 669.5 425 81.6
MBI13_g30268_MAGBIO Magnolia biondii HOM05D004558 ORTHO05D005647 1.7e-190 669.5 424 80.7
RcHm_v2.0_Chr3g0494361 Rosa chinensis HOM05D004558 ORTHO05D005647 1.7e-190 669.5 425 81.2
Manes.09G073800 Manihot esculenta HOM05D004558 ORTHO05D005647 2.3e-190 669.1 424 81.4
A09p49810 Brassica napus HOM05D004558 ORTHO05D005647 3.9e-190 668.3 423 82.5
BraA09t40434Z Brassica rapa HOM05D004558 ORTHO05D005647 3.9e-190 668.3 423 82.5
AUR62018443 Chenopodium quinoa HOM05D004558 ORTHO05D005647 3.9e-190 668.3 424 80.4
Carub.0005s2368 Capsella rubella HOM05D004558 ORTHO05D005647 5.1e-190 667.9 424 81.8
Cc06_g22740 Coffea canephora HOM05D004558 ORTHO05D005647 5.1e-190 667.9 432 79.6
Thhalv10006009m.g Eutrema salsugineum HOM05D004558 ORTHO05D005647 5.1e-190 667.9 424 81.4
Gohir.A01G192400 Gossypium hirsutum HOM05D004558 ORTHO05D005647 5.1e-190 667.9 424 80.2
FAN26G0634 Fragaria x ananassa HOM05D004558 ORTHO05D005647 6.6e-190 667.5 425 81.4
Gohir.D01G177500 Gossypium hirsutum HOM05D004558 ORTHO05D005647 6.6e-190 667.5 424 83.3
Oeu060750.2 Olea europaea HOM05D004558 ORTHO05D005647 6.6e-190 667.5 424 80.4
TAR546G0001 Trochodendron aralioides HOM05D004558 ORTHO05D005647 6.6e-190 667.5 424 80.4
Ciclev10011842m.g Citrus clementina HOM05D004558 ORTHO05D005647 8.7e-190 667.2 432 79.6
Lalb_Chr14g0365301 Lupinus albus HOM05D004558 ORTHO05D005647 1.1e-189 666.8 424 79.5
BcaB02g07634 Brassica carinata HOM05D004558 ORTHO05D005647 2.5e-189 665.6 424 81.4
BcaC07g40007 Brassica carinata HOM05D004558 ORTHO05D005647 2.5e-189 665.6 423 80.1
BcaC08g44811 Brassica carinata HOM05D004558 ORTHO05D005647 3.3e-189 665.2 424 80.7
BolC6t37555H Brassica oleracea HOM05D004558 ORTHO05D005647 3.3e-189 665.2 424 80.9
BraA07t29976Z Brassica rapa HOM05D004558 ORTHO05D005647 4.3e-189 664.8 424 80.7
A07p23140 Brassica napus HOM05D004558 ORTHO05D005647 1.3e-188 663.3 424 80.4
Prupe.7G022500 Prunus persica HOM05D004558 ORTHO05D005647 1.3e-188 663.3 366 89.6
AL5G38370 Arabidopsis lyrata HOM05D004558 ORTHO05D005647 1.6e-188 662.9 424 82.8
PSO384G3158 Papaver somniferum HOM05D004558 ORTHO05D005647 1.6e-188 662.9 424 79.0
Eucgr.A02177 Eucalyptus grandis HOM05D004558 ORTHO05D005647 3.6e-188 661.8 424 79.7
PSO339G0825 Papaver somniferum HOM05D004558 ORTHO05D005647 3.6e-188 661.8 424 79.2
SGA_v2.0_scaffold66G22316 Striga asiatica HOM05D004558 ORTHO05D005647 3.6e-188 661.8 424 79.0
Hma1.2p1_0251F.1_g102500 Hydrangea macrophylla HOM05D004558 ORTHO05D005647 6.2e-188 661.0 366 88.8
Sc19g0007850 Simmondsia chinensis HOM05D004558 ORTHO05D005647 6.2e-188 661.0 364 89.0
BcaC07g40105 Brassica carinata HOM05D004558 ORTHO05D005647 8.1e-188 660.6 423 81.3
PGSC0003DMG400007188 Solanum tuberosum HOM05D004558 ORTHO05D005647 8.1e-188 660.6 425 81.9
Oeu023011.1 Olea europaea HOM05D004558 ORTHO05D005647 1.4e-187 659.8 365 89.3
CANSAT78G1575 Cannabis sativa HOM05D004558 ORTHO05D005647 1.8e-187 659.4 425 82.6
CARHR167090 Cardamine hirsuta HOM05D004558 ORTHO05D005647 1.8e-187 659.4 424 80.4
SEGI_29193 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 1.8e-187 659.4 366 88.3
Sopen10g028720 Solanum pennellii HOM05D004558 ORTHO05D005647 2.4e-187 659.1 425 81.6
Gorai.002G225700 Gossypium raimondii HOM05D004558 ORTHO05D005647 3.1e-187 658.7 433 81.5
Medtr7g088340 Medicago truncatula HOM05D004558 ORTHO05D005647 4.0e-187 658.3 424 83.7
GSVIVG01025841001 Vitis vinifera HOM05D004558 ORTHO05D005647 5.3e-187 657.9 364 89.6
Solyc10g077040.2 Solanum lycopersicum HOM05D004558 ORTHO05D005647 6.9e-187 657.5 425 81.4
ATR1096G103 Amborella trichopoda HOM05D004558 ORTHO05D005647 9.0e-187 657.1 429 79.3
CAN.G959.37 Capsicum annuum HOM05D004558 ORTHO05D005647 9.0e-187 657.1 424 82.1
MSTRG.6287 Avicennia marina HOM05D004558 ORTHO05D005647 1.2e-186 656.8 424 83.0
Hund24509 Selenicereus undatus HOM05D004558 ORTHO05D005647 2.6e-186 655.6 364 89.0
CDE02G2354 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 1.3e-185 653.3 425 78.4
Migut.K00174 Erythranthe guttata HOM05D004558 ORTHO05D005647 1.3e-185 653.3 424 78.3
HPP92_000696 Vanilla planifolia HOM05D004558 ORTHO05D005647 2.2e-185 652.5 364 88.2
C06p23840 Brassica napus HOM05D004558 ORTHO05D005647 2.9e-185 652.1 428 79.4
ECA247G1747 Erigeron canadensis HOM05D004558 ORTHO05D005647 3.8e-185 651.7 432 77.8
PGR042G2423 Punica granatum HOM05D004558 ORTHO05D005647 3.8e-185 651.7 364 87.9
DCAR_013513 Daucus carota HOM05D004558 ORTHO05D005647 8.4e-185 650.6 424 78.5
Zm00001eb129000 Zea mays HOM05D004558 ORTHO05D005647 8.4e-185 650.6 364 87.9
Zm00001eb332650 Zea mays HOM05D004558 ORTHO05D005647 1.1e-184 650.2 364 87.9
Os01g0279100 Oryza sativa ssp. japonica HOM05D004558 ORTHO05D005647 3.2e-184 648.7 364 87.9
DCAR_016944 Daucus carota HOM05D004558 ORTHO05D005647 5.4e-184 647.9 366 86.9
Lj1A1078T64 Lonicera japonica HOM05D004558 ORTHO05D005647 9.3e-184 647.1 424 82.1
Sp5g05650 Schrenkiella parvula HOM05D004558 ORTHO05D005647 9.3e-184 647.1 399 83.2
unitig_46.g18485 Utricularia gibba HOM05D004558 ORTHO05D005647 2.7e-183 645.6 364 87.9
Peaxi162Scf00003g05355 Petunia axillaris HOM05D004558 ORTHO05D005647 4.6e-183 644.8 432 78.0
HanXRQChr10g0291961 Helianthus annuus HOM05D004558 ORTHO05D005647 1.3e-182 643.3 431 79.8
Lsat_1_v5_gn_9_30221 Lactuca sativa HOM05D004558 ORTHO05D005647 4.3e-181 638.3 427 78.0
Lalb_Chr24g0400681 Lupinus albus HOM05D004558 ORTHO05D005647 4.5e-178 628.2 424 74.1
AT3G56940 Arabidopsis thaliana HOM05D004558 ORTHO05D005647 8.4e-177 624.0 347 88.8
Mapoly0124s0017 Marchantia polymorpha HOM05D004558 ORTHO05D005647 6.7e-174 614.4 364 81.3
AagrBONN_evm.TU.Sc2ySwM_228.50 Anthoceros agrestis HOM05D004558 ORTHO05D005647 9.0e-171 604.0 363 80.2
SMO119G0375 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 3.4e-170 602.1 366 80.1
Pp3c11_7910 Physcomitrium patens HOM05D004558 ORTHO05D005647 1.1e-168 597.0 426 70.9
unitig_37.g12773 Utricularia gibba HOM05D004558 ORTHO05D005647 1.9e-168 596.3 331 88.5
CDE04G3757 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 1.8e-166 589.7 426 72.8
EL10Ac3g07349 Beta vulgaris HOM05D004558 ORTHO05D005647 1.9e-165 586.3 424 75.9
Atru.chr1.1539 Acer truncatum HOM05D004558 ORTHO05D005647 1.5e-154 550.1 354 82.5
SGA_v2.0_scaffold69G23196 Striga asiatica HOM05D004558 ORTHO05D005647 2.2e-153 546.2 417 68.8
Psat3g082520 Pisum sativum HOM05D004558 ORTHO05D005647 2.0e-146 523.1 338 83.4
Ca_08344_v3 Cicer arietinum L. HOM05D004558 ORTHO05D005647 1.3e-145 520.4 349 81.1
Cre12.g510050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 1.9e-144 516.5 370 67.6
PRCOL_00006479 Prasinoderma coloniale HOM05D004558 ORTHO05D005647 5.5e-144 515.0 366 68.9
Dinv11638 Davidia involucrata HOM05D004558 ORTHO05D005647 2.1e-143 513.1 276 90.2
Pp3c7_26570 Physcomitrium patens HOM05D004558 ORTHO05D005647 1.3e-137 493.8 276 86.2
HPP92_000650 Vanilla planifolia HOM05D004558 ORTHO05D005647 5.0e-137 491.9 268 88.8
Ah.04g150190 Amaranthus hybridus HOM05D004558 ORTHO05D005647 8.5e-137 491.1 428 63.6
MCO13G411 Micromonas commoda HOM05D004558 ORTHO05D005647 3.2e-136 489.2 358 68.2
SMO115G0161 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 1.3e-132 477.2 366 65.8
MELO3C026802.2 Cucumis melo HOM05D004558 ORTHO05D005647 2.5e-128 463.0 304 79.3
Cre07.g346050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 1.2e-127 460.7 354 63.8
Glyma.19G123800 Glycine max HOM05D004558 ORTHO05D005647 6.1e-127 458.4 315 79.4
SalBow6G0122 Salvia bowleyana HOM05D004558 ORTHO05D005647 2.0e-125 453.4 248 88.7
SalBow1G4785 Salvia bowleyana HOM05D004558 ORTHO05D005647 2.7e-114 416.4 299 72.2
CDE02G0342 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 1.0e-110 404.4 239 82.4
CBR_g50688 Chara braunii HOM05D004558 ORTHO05D005647 4.1e-99 365.9 242 74.0
Oeu021019.1 Olea europaea HOM05D004558 ORTHO05D005647 1.9e-91 340.5 336 57.4
BolC4t25242H Brassica oleracea HOM05D004558 ORTHO05D005647 1.1e-59 235.0 132 86.4
C04p35620 Brassica napus HOM05D004558 ORTHO05D005647 1.4e-59 234.6 132 85.6
CBR_g55376 Chara braunii HOM05D004558 ORTHO05D005647 1.7e-52 211.1 363 37.7
SEGI_05566 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 7.1e-51 205.7 118 83.9
SEGI_20922 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 1.6e-50 204.5 118 83.1
C08p32210 Brassica napus HOM05D004558 ORTHO05D005647 5.0e-44 183.0 104 87.5
A04p03620 Brassica napus HOM05D004558 ORTHO05D005647 2.5e-43 180.6 103 87.4
BraA04t16073Z Brassica rapa HOM05D004558 ORTHO05D005647 2.5e-43 180.6 103 87.4
BcaC02g09879 Brassica carinata HOM05D004558 ORTHO05D005647 9.1e-38 162.2 94 85.1
Pp3c2_30650 Physcomitrium patens HOM05D004558 ORTHO05D005647 1.9e-35 154.5 99 77.8
CDE02G4696 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 6.7e-33 146.0 94 77.7
BcaB02g08342 Brassica carinata HOM05D004558 ORTHO05D005647 4.5e-29 133.3 105 70.5
Ah.13g077400 Amaranthus hybridus HOM05D004558 ORTHO05D000435 6.1e-26 122.9 160 47.5
Lalb_Chr22g0357681 Lupinus albus HOM05D004558 ORTHO05D005647 1.1e-24 118.6 69 84.1
ClCG10G010310 Citrullus lanatus HOM05D004558 ORTHO05D005647 1.3e-23 115.2 71 71.8
AagrBONN_evm.TU.Sc2ySwM_368.2127 Anthoceros agrestis HOM05D004558 ORTHO05D005647 1.4e-22 111.7 69 78.3
ClCG10G010320 Citrullus lanatus HOM05D004558 ORTHO05D005647 1.4e-22 111.7 81 71.6
Lalb_Chr22g0358091 Lupinus albus HOM05D004558 ORTHO05D005647 1.1e-19 102.1 47 93.6
MD00G1107700 Malus domestica HOM05D004558 ORTHO05D005647 5.5e-19 99.8 62 80.6
AagrBONN_evm.TU.Sc2ySwM_344.4282 Anthoceros agrestis HOM05D004558 ORTHO05D000003 7.2e-19 99.4 69 73.9
SEGI_00644 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 7.7e-13 79.3 42 92.9
Lalb_Chr22g0358081 Lupinus albus HOM05D004558 ORTHO05D005647 2.5e-11 74.3 41 87.8
MSTRG.26191 Avicennia marina HOM05D004558 ORTHO05D087779 5.4e-06 56.6 53 56.6


User provided reference genes

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