Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0233900 Rhododendron simsii HOM05D004448 ORTHO05D005919 8.0e-185 650.2 312 100.0
vmacro06280 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 9.8e-66 254.6 294 50.0
CSS0023607 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 4.9e-65 252.3 291 46.0
Actinidia25266 Actinidia chinensis HOM05D004448 ORTHO05D005919 1.7e-62 243.8 296 46.6
Dinv36750 Davidia involucrata HOM05D004448 ORTHO05D005919 1.9e-61 240.4 308 42.9
Dinv42301 Davidia involucrata HOM05D004448 ORTHO05D005919 1.2e-60 237.7 291 44.0
Rhsim03G0233500 Rhododendron simsii HOM05D004448 ORTHO05D005919 3.1e-59 233.0 258 51.6
GSVIVG01015227001 Vitis vinifera HOM05D004448 ORTHO05D005919 7.5e-58 228.4 291 44.0
Prupe.7G212600 Prunus persica HOM05D004448 ORTHO05D005919 1.6e-55 220.7 346 40.5
Lsat_1_v5_gn_5_145680 Lactuca sativa HOM05D004448 ORTHO05D005919 6.0e-55 218.8 302 41.1
Rhsim05G0022900 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.0e-54 218.0 329 39.2
Nitab4.5_0000938g0020 Nicotiana tabacum HOM05D004448 ORTHO05D005919 3.9e-54 216.1 216 51.4
HanXRQChr12g0354731 Helianthus annuus HOM05D004448 ORTHO05D005919 1.1e-53 214.5 289 41.5
Oeu024590.1 Olea europaea HOM05D004448 ORTHO05D005919 5.6e-53 212.2 186 57.5
Nitab4.5_0004087g0010 Nicotiana tabacum HOM05D004448 ORTHO05D005919 7.3e-53 211.8 215 51.2
Cc06_g11170 Coffea canephora HOM05D004448 ORTHO05D005919 1.6e-52 210.7 187 55.1
RhsimUnG0189000 Rhododendron simsii HOM05D004448 ORTHO05D005919 2.8e-52 209.9 273 43.2
Sopen07g011050 Solanum pennellii HOM05D004448 ORTHO05D005919 3.6e-52 209.5 189 55.0
ECA234G2909 Erigeron canadensis HOM05D004448 ORTHO05D005919 8.1e-52 208.4 297 39.4
vmacro17218 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 8.1e-52 208.4 289 41.9
vmacro22686 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 8.1e-52 208.4 289 41.9
Hma1.2p1_0663F.1_g198910 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 1.4e-51 207.6 274 43.1
Solyc07g021550.3 Solanum lycopersicum HOM05D004448 ORTHO05D005919 3.1e-51 206.5 189 54.5
VMungo0464G0625 Vigna mungo HOM05D005189 ORTHO05D006093 4.0e-51 206.1 300 41.0
MBI08_g34934_MAGBIO Magnolia biondii HOM05D004448 ORTHO05D005919 5.2e-51 205.7 293 40.6
QL02p063021 Quercus lobata HOM05D004448 ORTHO05D005919 5.2e-51 205.7 195 57.4
Nitab4.5_0000713g0030 Nicotiana tabacum HOM05D004448 ORTHO05D005919 1.5e-50 204.1 215 50.7
CANSAT56G0950 Cannabis sativa HOM05D004448 ORTHO05D005919 3.4e-50 203.0 293 43.0
Phvul.004G171600 Phaseolus vulgaris HOM05D004448 ORTHO05D005919 3.4e-50 203.0 287 41.5
Nn8g38906 Nelumbo nucifera HOM05D004448 ORTHO05D005919 5.8e-50 202.2 190 54.7
Cfa003108 Carpinus fangiana HOM05D004448 ORTHO05D005919 1.7e-49 200.7 282 42.6
Peaxi162Scf00175g00047 Petunia axillaris HOM05D004448 ORTHO05D005919 2.9e-49 199.9 214 50.0
PGSC0003DMG400033614 Solanum tuberosum HOM05D004448 ORTHO05D005919 4.9e-49 199.1 184 54.3
PSO210G3334 Papaver somniferum HOM05D004448 ORTHO05D005919 6.4e-49 198.7 296 38.2
TWI32G1061 Tripterygium wilfordii HOM05D004448 ORTHO05D005919 2.4e-48 196.8 338 36.4
PSO210G5509 Papaver somniferum HOM05D004448 ORTHO05D005919 4.1e-48 196.1 183 53.0
Potri.006G150000 Populus trichocarpa HOM05D004448 ORTHO05D005919 4.1e-48 196.1 188 56.4
Sabra06G0118700 Salix brachista HOM05D004448 ORTHO05D005919 5.4e-48 195.7 292 42.1
Aqoxy5G03492 Aquilegia oxysepala HOM05D004448 ORTHO05D005919 7.1e-48 195.3 275 41.5
ClCG03G015750 Citrullus lanatus HOM05D004448 ORTHO05D005919 7.1e-48 195.3 182 56.0
Haze_25890 Corylus avellana HOM05D004448 ORTHO05D005919 9.2e-48 194.9 282 41.8
Ciclev10010615m.g Citrus clementina HOM05D004448 ORTHO05D005919 1.6e-47 194.1 285 41.1
CsaV3_1G040260 Cucumis sativus L. HOM05D004448 ORTHO05D005919 1.6e-47 194.1 191 55.0
CsaV3_UNG066510 Cucumis sativus L. HOM05D004448 ORTHO05D005919 1.6e-47 194.1 191 55.0
arahy.Tifrunner.gnm1.ann1.6Q96ZG Arachis hypogaea HOM05D004448 ORTHO05D005919 3.5e-47 193.0 354 35.9
COL.COLO4_18221 Corchorus olitorius HOM05D004448 ORTHO05D005919 3.5e-47 193.0 287 40.1
arahy.Tifrunner.gnm1.ann1.LLR3FQ Arachis hypogaea HOM05D004448 ORTHO05D005919 1.0e-46 191.4 354 35.9
Lj2g0008301 Lotus japonicus HOM05D004448 ORTHO05D005919 1.3e-46 191.0 377 35.3
Duzib168G0645 Durio zibethinus HOM05D004448 ORTHO05D005919 1.7e-46 190.7 289 39.8
SalBow6G4094 Salvia bowleyana HOM05D004448 ORTHO05D005919 8.6e-46 188.3 285 38.2
FvH4_1g07151 Fragaria vesca HOM05D004448 ORTHO05D005919 1.1e-45 188.0 288 39.6
PGR142G4073 Punica granatum HOM05D004448 ORTHO05D005919 1.5e-45 187.6 296 38.5
Sc18g0001910 Simmondsia chinensis HOM05D004448 ORTHO05D005919 1.9e-45 187.2 189 52.4
RcHm_v2.0_Chr2g0093041 Rosa chinensis HOM05D004448 ORTHO05D005919 2.5e-45 186.8 286 40.2
FAN26G0987 Fragaria x ananassa HOM05D004448 ORTHO05D005919 3.3e-45 186.4 288 39.9
FAN19G1271 Fragaria x ananassa HOM05D004448 ORTHO05D005919 4.3e-45 186.0 359 34.8
Medtr7g090060 Medicago truncatula HOM05D004448 ORTHO05D005919 4.3e-45 186.0 372 33.9
FAN23G3053 Fragaria x ananassa HOM05D004448 ORTHO05D005919 1.2e-44 184.5 296 37.8
Manes.03G032000 Manihot esculenta HOM05D004448 ORTHO05D005919 1.2e-44 184.5 297 38.4
Psat1g049640 Pisum sativum HOM05D004448 ORTHO05D005919 1.2e-44 184.5 178 53.4
Thecc.09G092200 Theobroma cacao HOM05D004448 ORTHO05D005919 2.1e-44 183.7 289 39.4
Ciclev10008074m.g Citrus clementina HOM05D004448 ORTHO05D005919 2.8e-44 183.3 282 39.7
DCAR_024685 Daucus carota HOM05D004448 ORTHO05D005919 2.8e-44 183.3 161 55.3
Migut.J00591 Erythranthe guttata HOM05D004448 ORTHO05D005919 8.1e-44 181.8 189 51.3
FAN26G2794 Fragaria x ananassa HOM05D004448 ORTHO05D005919 1.8e-43 180.6 292 37.7
ATR0705G152 Amborella trichopoda HOM05D004448 ORTHO05D005919 3.1e-43 179.9 276 39.5
Eucgr.C00913 Eucalyptus grandis HOM05D004448 ORTHO05D005919 1.2e-42 177.9 183 53.6
Ca_08398_v3 Cicer arietinum L. HOM05D004448 ORTHO05D005919 1.5e-42 177.6 191 50.8
unitig_0.g218 Utricularia gibba HOM05D004448 ORTHO05D005919 2.0e-42 177.2 281 37.4
HPP92_006937 Vanilla planifolia HOM05D004448 ORTHO05D005919 2.0e-42 177.2 184 47.3
Atru.chr7.1561 Acer truncatum HOM05D004448 ORTHO05D005919 2.6e-42 176.8 177 53.1
Cpa.g.sc7.238 Carica papaya HOM05D004448 ORTHO05D005919 2.6e-42 176.8 295 38.3
CiPaw.03G218000 Carya illinoinensis HOM05D004448 ORTHO05D005919 2.6e-42 176.8 163 57.7
Hund06702 Selenicereus undatus HOM05D004448 ORTHO05D005919 3.4e-42 176.4 285 38.9
THA.LOC104813490 Tarenaya hassleriana HOM05D004448 ORTHO05D005919 7.6e-42 175.3 182 51.6
Medtr6g092520 Medicago truncatula HOM05D004448 ORTHO05D005919 9.9e-42 174.9 293 37.2
EL10Ac8g19309 Beta vulgaris HOM05D004448 ORTHO05D005919 2.2e-41 173.7 185 48.6
Aa31LG2G21230 Aethionema arabicum HOM05D004448 ORTHO05D005919 2.9e-41 173.3 248 40.3
Glyma.07G128700 Glycine max HOM05D004448 ORTHO05D005919 3.8e-41 172.9 288 37.2
Zm00001eb325970 Zea mays HOM05D004448 ORTHO05D005919 4.9e-41 172.6 190 49.5
AUR62027409 Chenopodium quinoa HOM05D004448 ORTHO05D005919 6.4e-41 172.2 181 49.7
MELO3C015453.2 Cucumis melo HOM05D004448 ORTHO05D005919 6.4e-41 172.2 293 36.9
AUR62031324 Chenopodium quinoa HOM05D004448 ORTHO05D005919 8.4e-41 171.8 186 48.4
Gohir.D08G266000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.1e-40 171.4 179 52.0
MD02G1076000 Malus domestica HOM05D004448 ORTHO05D005919 1.1e-40 171.4 144 62.5
Ah.14g085380 Amaranthus hybridus HOM05D004448 ORTHO05D005919 1.4e-40 171.0 189 47.1
Gohir.A08G245000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.9e-40 170.6 179 51.4
CSS0050052 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 3.2e-40 169.9 288 37.5
Gohir.D08G265800 Gossypium hirsutum HOM05D004448 ORTHO05D005919 7.1e-40 168.7 180 51.7
Sp6g18520 Schrenkiella parvula HOM05D004448 ORTHO05D005919 9.3e-40 168.3 182 49.5
Os07g0586700 Oryza sativa ssp. japonica HOM05D004448 ORTHO05D005919 1.6e-39 167.5 196 49.0
BcaC04g20054 Brassica carinata HOM05D004448 ORTHO05D005919 2.7e-39 166.8 192 46.9
C09p48340 Brassica napus HOM05D004448 ORTHO05D005919 2.7e-39 166.8 192 46.9
Mapoly0070s0093 Marchantia polymorpha HOM05D004448 ORTHO05D005919 7.8e-39 165.2 324 31.2
CDE09G0006 Ceratophyllum demersum HOM05D004448 ORTHO05D005919 1.3e-38 164.5 167 48.5
BcaC02g12506 Brassica carinata HOM05D004448 ORTHO05D005919 2.3e-38 163.7 181 49.7
BcaC02g12705 Brassica carinata HOM05D004448 ORTHO05D005919 2.3e-38 163.7 300 34.7
AT5G56780 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 3.9e-38 162.9 178 48.9
BraA10t43502Z Brassica rapa HOM05D004448 ORTHO05D005919 3.9e-38 162.9 302 34.1
BcaB08g36059 Brassica carinata HOM05D004448 ORTHO05D005919 5.1e-38 162.5 295 33.9
A10p14110 Brassica napus HOM05D004448 ORTHO05D005919 8.7e-38 161.8 302 34.1
C04p01820 Brassica napus HOM05D004448 ORTHO05D005919 8.7e-38 161.8 301 34.9
BolC9t57684H Brassica oleracea HOM05D004448 ORTHO05D005919 1.9e-37 160.6 192 46.4
Thhalv10015325m.g Eutrema salsugineum HOM05D004448 ORTHO05D005919 1.9e-37 160.6 182 46.7
Aa31LG3G12720 Aethionema arabicum HOM05D004448 ORTHO05D005919 5.6e-37 159.1 286 35.7
A05p01610 Brassica napus HOM05D004448 ORTHO05D005919 2.8e-36 156.8 177 48.0
BraA05t19157Z Brassica rapa HOM05D004448 ORTHO05D005919 2.8e-36 156.8 177 48.0
Carub.0008s1726 Capsella rubella HOM05D004448 ORTHO05D005919 2.8e-36 156.8 179 48.0
SMO139G0129 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 2.4e-35 153.7 189 43.4
AL8G32620 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 2.0e-34 150.6 164 49.4
Pp3c3_34250 Physcomitrium patens HOM05D004448 ORTHO05D005919 3.4e-34 149.8 270 35.2
Pp3c4_9790 Physcomitrium patens HOM05D004448 ORTHO05D005919 3.4e-34 149.8 318 32.7
RcHm_v2.0_Chr2g0093031 Rosa chinensis HOM05D004448 ORTHO05D005919 4.5e-34 149.4 287 35.5
AagrBONN_evm.TU.Sc2ySwM_117.4075 Anthoceros agrestis HOM05D004448 ORTHO05D005919 7.6e-34 148.7 206 41.3
Gohir.A08G244900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 9.9e-34 148.3 277 35.0
SGA_v2.0_scaffold62G21589 Striga asiatica HOM05D004448 ORTHO05D005919 9.3e-32 141.7 150 48.7
CBR_g29538 Chara braunii HOM05D004448 ORTHO05D005919 1.6e-31 141.0 212 40.6
CARHR270530 Cardamine hirsuta HOM05D004448 ORTHO05D005919 8.7e-30 135.2 164 46.3
Gohir.A08G245100 Gossypium hirsutum HOM05D004448 ORTHO05D005919 5.6e-29 132.5 176 42.0
TPR.G35500 Trifolium pratense HOM05D004448 ORTHO05D005919 7.4e-29 132.1 147 50.3
CARHR270520 Cardamine hirsuta HOM05D004448 ORTHO05D005919 3.1e-27 126.7 190 41.6
Gorai.N024000 Gossypium raimondii HOM05D004448 ORTHO05D005919 4.0e-27 126.3 247 36.4
Pp3c27_3080 Physcomitrium patens HOM05D004448 ORTHO05D005919 8.4e-25 118.6 259 30.5
SMO157G0009 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 1.2e-23 114.8 151 43.0
Lalb_Chr24g0393831 Lupinus albus HOM05D004448 ORTHO05D005919 2.1e-23 114.0 153 43.1
Duzib150G0429 Durio zibethinus HOM05D004448 ORTHO05D005919 7.9e-23 112.1 327 27.5
TPR.G35590 Trifolium pratense HOM05D004448 ORTHO05D005919 7.9e-23 112.1 104 55.8
Hma1.2p1_0024F.1_g016070 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 6.7e-22 109.0 97 54.6
AT5G56770 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 3.3e-21 106.7 171 39.2
Carub.0008s1725 Capsella rubella HOM05D004448 ORTHO05D005919 7.4e-21 105.5 188 36.2
AL8G32610 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 1.6e-20 104.4 172 37.2
Pp3c15_21310 Physcomitrium patens HOM05D004448 ORTHO05D005919 1.8e-19 100.9 277 27.4
TPR.G40396 Trifolium pratense HOM05D004448 ORTHO05D005919 3.1e-19 100.1 105 48.6
Rhsim03G0233800 Rhododendron simsii HOM05D001585 ORTHO05D026412 4.0e-19 99.8 75 73.3
Pp3c16_1200 Physcomitrium patens HOM05D004448 ORTHO05D005919 9.0e-19 98.6 110 48.2
Atru.chr7.1555 Acer truncatum HOM05D004448 ORTHO05D005919 1.5e-18 97.8 96 54.2
SalBow1G6253 Salvia bowleyana HOM05D004448 ORTHO05D005919 2.6e-18 97.1 123 43.9
Medtr6g092500 Medicago truncatula HOM05D004448 ORTHO05D005919 3.4e-18 96.7 113 47.8
CARHR233700 Cardamine hirsuta HOM05D004448 ORTHO05D015948 1.8e-11 74.3 194 27.3
CBR_g20264 Chara braunii HOM05D000505 ORTHO05D000301 2.4e-11 73.9 147 32.7
Gohir.D08G265900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 5.3e-11 72.8 243 25.9
FvH4_1g07150 Fragaria vesca HOM05D004448 ORTHO05D005919 5.9e-10 69.3 222 26.1
RhsimUnG0145000 Rhododendron simsii HOM05D004448 ORTHO05D005919 7.9e-07 58.9 152 28.3
Medtr6g092480 Medicago truncatula HOM05D012533 ORTHO05D264910 3.0e-06 57.0 59 44.1
MD02G1075500 Malus domestica HOM05D004448 ORTHO05D005919 6.7e-06 55.8 146 28.1


User provided reference genes

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