Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0210600 Rhododendron simsii HOM05D005275 ORTHO05D006435 6.7e-145 517.3 257 100.0
vmacro06395 Vaccinium macrocarpon HOM05D005275 ORTHO05D006435 3.7e-87 325.5 293 64.2
CSS0019342 Camellia sinensis var. sinensis HOM05D005275 ORTHO05D006435 2.8e-82 309.3 269 64.3
Lj8A623T20 Lonicera japonica HOM05D005275 ORTHO05D006435 5.4e-78 295.0 269 62.8
Actinidia34231 Actinidia chinensis HOM05D005275 ORTHO05D006435 2.1e-77 293.1 248 66.5
Hma1.2p1_1507F.1_g287690 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 2.7e-77 292.7 255 63.9
HanXRQChr16g0505961 Helianthus annuus HOM05D005275 ORTHO05D006435 4.3e-75 285.4 262 60.3
Lsat_1_v5_gn_7_91160 Lactuca sativa HOM05D005275 ORTHO05D006435 5.8e-72 275.0 268 57.5
HanXRQChr04g0128021 Helianthus annuus HOM05D005275 ORTHO05D006435 7.6e-72 274.6 262 58.4
Cc01_g04130 Coffea canephora HOM05D005275 ORTHO05D006435 3.8e-71 272.3 259 59.1
ECA236G4645 Erigeron canadensis HOM05D005275 ORTHO05D006435 1.2e-69 267.3 265 57.0
Actinidia08664 Actinidia chinensis HOM05D005275 ORTHO05D006435 2.7e-69 266.2 230 64.8
DCAR_008951 Daucus carota HOM05D005275 ORTHO05D006435 6.6e-68 261.5 258 58.1
Nn8g39914 Nelumbo nucifera HOM05D005275 ORTHO05D006435 8.6e-68 261.2 265 57.4
EL10Ac3g05547 Beta vulgaris HOM05D005275 ORTHO05D006435 2.5e-67 259.6 267 55.8
Oeu060995.2 Olea europaea HOM05D005275 ORTHO05D006435 1.4e-65 253.8 270 56.3
Ciclev10022175m.g Citrus clementina HOM05D005275 ORTHO05D006435 3.1e-65 252.7 273 52.4
Ah.13g074120 Amaranthus hybridus HOM05D000770 ORTHO05D000586 2.0e-64 250.0 239 59.0
GSVIVG01038570001 Vitis vinifera HOM05D005275 ORTHO05D006435 2.0e-64 250.0 276 54.0
Cpa.g.sc69.87 Carica papaya HOM05D005275 ORTHO05D006435 7.6e-64 248.1 277 53.1
Atru.chr1.1611 Acer truncatum HOM05D005275 ORTHO05D006435 4.9e-63 245.4 268 52.6
AUR62002807 Chenopodium quinoa HOM05D005275 ORTHO05D006435 8.4e-63 244.6 266 54.1
Cfa016214 Carpinus fangiana HOM05D005275 ORTHO05D006435 1.4e-62 243.8 278 52.9
CiPaw.06G045000 Carya illinoinensis HOM05D005275 ORTHO05D006435 1.4e-62 243.8 277 53.1
MBI14_g34252_MAGBIO Magnolia biondii HOM05D005275 ORTHO05D006435 1.4e-62 243.8 266 54.1
Duzib114G0832 Durio zibethinus HOM05D005275 ORTHO05D006435 5.4e-62 241.9 276 54.3
Hund20626 Selenicereus undatus HOM05D005275 ORTHO05D006435 1.2e-61 240.7 264 53.0
MSTRG.48 Avicennia marina HOM05D005275 ORTHO05D006435 2.1e-61 240.0 260 53.5
Eucgr.H01489 Eucalyptus grandis HOM05D005275 ORTHO05D006435 2.7e-61 239.6 249 55.8
TWI39G0072 Tripterygium wilfordii HOM05D005275 ORTHO05D006435 2.7e-61 239.6 277 52.0
TAR374G1406 Trochodendron aralioides HOM05D005275 ORTHO05D006435 6.0e-61 238.4 232 57.3
Sabra12G0015200 Salix brachista HOM05D005275 ORTHO05D007032 1.0e-60 237.7 278 51.4
THA.LOC104811989 Tarenaya hassleriana HOM05D005275 ORTHO05D006435 1.0e-60 237.7 257 54.1
PGR042G0357 Punica granatum HOM05D005275 ORTHO05D006435 1.3e-60 237.3 276 50.7
PSO421G0063 Papaver somniferum HOM05D005275 ORTHO05D006435 2.3e-60 236.5 270 51.9
Peaxi162Scf00581g00021 Petunia axillaris HOM05D005275 ORTHO05D006435 3.9e-60 235.7 293 48.1
Aqoxy7G03390 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 1.9e-59 233.4 268 51.1
Migut.F01020 Erythranthe guttata HOM05D005275 ORTHO05D006435 1.9e-59 233.4 260 52.7
Lj1C1021T21 Lonicera japonica HOM05D005275 ORTHO05D006435 1.9e-59 233.4 254 56.7
COL.COLO4_38546 Corchorus olitorius HOM05D005275 ORTHO05D006435 2.5e-59 233.0 275 52.4
Haze_00229 Corylus avellana HOM05D005275 ORTHO05D006435 2.5e-59 233.0 266 53.0
Sc02g0003260 Simmondsia chinensis HOM05D005275 ORTHO05D006435 3.3e-59 232.6 292 49.7
CANSAT21G1202 Cannabis sativa HOM05D005275 ORTHO05D006435 5.6e-59 231.9 278 51.4
Manes.01G140200 Manihot esculenta HOM05D005275 ORTHO05D006435 1.3e-58 230.7 277 50.5
Sed0020778 Sechium edule HOM05D005275 ORTHO05D006435 2.1e-58 229.9 266 52.3
Potri.012G017300 Populus trichocarpa HOM05D005275 ORTHO05D006435 1.8e-57 226.9 278 50.4
QL09p007976 Quercus lobata HOM05D005275 ORTHO05D006435 1.8e-57 226.9 277 48.4
Potri.012G121228 Populus trichocarpa HOM05D005275 ORTHO05D006435 4.0e-57 225.7 278 50.0
Nitab4.5_0004499g0010 Nicotiana tabacum HOM05D005275 ORTHO05D006435 5.3e-57 225.3 261 50.6
ClCG05G009030 Citrullus lanatus HOM05D005275 ORTHO05D006435 1.2e-56 224.2 267 50.9
Sed0013694 Sechium edule HOM05D005275 ORTHO05D006435 1.2e-56 224.2 267 49.8
Solyc05g032880.3 Solanum lycopersicum HOM05D005275 ORTHO05D006435 1.2e-56 224.2 282 47.9
Glyma.19G085300 Glycine max HOM05D005275 ORTHO05D006435 3.4e-56 222.6 277 49.5
Sopen05g023270 Solanum pennellii HOM05D005275 ORTHO05D006435 3.4e-56 222.6 282 47.5
Nitab4.5_0000006g0650 Nicotiana tabacum HOM05D005275 ORTHO05D006435 4.5e-56 222.2 261 50.2
Glyma.06G288700 Glycine max HOM05D005275 ORTHO05D006435 7.6e-56 221.5 277 48.4
Gohir.D05G289000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 7.6e-56 221.5 277 50.9
Glyma.16G061500 Glycine max HOM05D005275 ORTHO05D006435 9.9e-56 221.1 277 48.7
Lj3g0024506 Lotus japonicus HOM05D005275 ORTHO05D006435 9.9e-56 221.1 277 49.1
RcHm_v2.0_Chr1g0381511 Rosa chinensis HOM05D005275 ORTHO05D006435 9.9e-56 221.1 277 48.7
BolC9t57154H Brassica oleracea HOM05D005275 ORTHO05D006435 1.7e-55 220.3 257 49.8
AUR62014115 Chenopodium quinoa HOM05D005275 ORTHO05D006435 2.2e-55 219.9 322 44.7
Gorai.009G304100 Gossypium raimondii HOM05D005275 ORTHO05D006435 2.2e-55 219.9 277 50.5
BcaC04g20510 Brassica carinata HOM05D005275 ORTHO05D006435 2.9e-55 219.5 257 49.4
C09p42780 Brassica napus HOM05D005275 ORTHO05D006435 2.9e-55 219.5 257 49.4
Lalb_Chr22g0360521 Lupinus albus HOM05D005275 ORTHO05D006435 2.9e-55 219.5 278 50.0
Thhalv10014627m.g Eutrema salsugineum HOM05D005275 ORTHO05D006435 4.9e-55 218.8 252 50.8
BcaB05g22006 Brassica carinata HOM05D000442 ORTHO05D007032 6.4e-55 218.4 255 49.8
BcaB08g35669 Brassica carinata HOM05D005275 ORTHO05D006435 6.4e-55 218.4 257 49.4
Gohir.A10G201500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 6.4e-55 218.4 277 50.2
Gohir.A11G223000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 6.4e-55 218.4 277 50.2
Gohir.A12G028500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 6.4e-55 218.4 277 50.2
Phvul.008G150700 Phaseolus vulgaris HOM05D005275 ORTHO05D006435 6.4e-55 218.4 280 50.0
CsaV3_3G019750 Cucumis sativus L. HOM05D005275 ORTHO05D006435 8.4e-55 218.0 266 50.4
Gohir.A05G287800 Gossypium hirsutum HOM05D005275 ORTHO05D006435 8.4e-55 218.0 277 50.5
Thecc.10G105800 Theobroma cacao HOM05D005275 ORTHO05D006435 8.4e-55 218.0 261 53.3
AL8G27700 Arabidopsis lyrata HOM05D005275 ORTHO05D006435 1.4e-54 217.2 275 46.5
BcaC03g14459 Brassica carinata HOM05D005275 ORTHO05D006435 1.4e-54 217.2 255 49.8
A10p10560 Brassica napus HOM05D005275 ORTHO05D006435 1.4e-54 217.2 257 49.0
FAN01G0712 Fragaria x ananassa HOM05D000442 ORTHO05D007032 1.4e-54 217.2 253 50.2
Peaxi162Scf00251g01010 Petunia axillaris HOM05D005275 ORTHO05D006435 1.4e-54 217.2 275 47.6
Carub.0008s1327 Capsella rubella HOM05D005275 ORTHO05D006435 1.9e-54 216.9 275 47.3
Sp6g15240 Schrenkiella parvula HOM05D005275 ORTHO05D006435 1.9e-54 216.9 252 50.4
FAN10G0352 Fragaria x ananassa HOM05D005275 ORTHO05D006435 2.4e-54 216.5 273 48.0
Gohir.A12G115900 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.4e-54 216.5 277 49.8
Gohir.D01G152400 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.4e-54 216.5 277 49.8
Gohir.D05G384500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.4e-54 216.5 277 49.8
Psat7g227360 Pisum sativum HOM05D005275 ORTHO05D006435 3.2e-54 216.1 280 49.3
TPR.G34143 Trifolium pratense HOM05D005275 ORTHO05D006435 3.2e-54 216.1 277 48.4
arahy.Tifrunner.gnm1.ann1.T9K8GJ Arachis hypogaea HOM05D005275 ORTHO05D006435 4.2e-54 215.7 275 49.5
A02p11320 Brassica napus HOM05D005275 ORTHO05D006435 4.2e-54 215.7 251 50.2
BolC2t08015H Brassica oleracea HOM05D005275 ORTHO05D006435 4.2e-54 215.7 251 50.6
Ca_10483_v3 Cicer arietinum L. HOM05D005275 ORTHO05D006435 4.2e-54 215.7 280 48.6
arahy.Tifrunner.gnm1.ann1.AF7P3K Arachis hypogaea HOM05D005275 ORTHO05D006435 5.4e-54 215.3 275 49.1
BraA10t43140Z Brassica rapa HOM05D005275 ORTHO05D006435 5.4e-54 215.3 257 48.6
Gohir.A04G061600 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.4e-54 215.3 277 49.8
CDE01G0034 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 7.1e-54 214.9 252 51.6
FAN10G2096 Fragaria x ananassa HOM05D000442 ORTHO05D007032 7.1e-54 214.9 253 49.8
Ciclev10023889m.g Citrus clementina HOM05D005275 ORTHO05D006435 9.3e-54 214.5 273 47.3
Gohir.A08G051700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 9.3e-54 214.5 277 49.5
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 1.6e-53 213.8 274 47.1
BraA02t06194Z Brassica rapa HOM05D005275 ORTHO05D006435 1.6e-53 213.8 251 49.8
AT5G53070 Arabidopsis thaliana HOM05D005275 ORTHO05D006435 2.7e-53 213.0 276 46.7
arahy.Tifrunner.gnm1.ann1.5IWG5U Arachis hypogaea HOM05D005275 ORTHO05D006435 2.7e-53 213.0 275 48.7
CARHR266090 Cardamine hirsuta HOM05D005275 ORTHO05D006435 2.7e-53 213.0 275 46.5
Os05g0528900 Oryza sativa ssp. japonica HOM05D005275 ORTHO05D006435 2.7e-53 213.0 238 53.4
SHI02356 Sapria himalayana HOM05D005275 ORTHO05D006435 2.7e-53 213.0 277 47.7
C02p18700 Brassica napus HOM05D005275 ORTHO05D006435 3.5e-53 212.6 248 50.4
PSO675G7727 Papaver somniferum HOM05D005275 ORTHO05D006435 5.1e-52 208.8 262 48.1
MD07G1293600 Malus domestica HOM05D005275 ORTHO05D006435 1.5e-51 207.2 278 47.1
Medtr5g038540 Medicago truncatula HOM05D005275 ORTHO05D006435 1.5e-51 207.2 280 47.1
arahy.Tifrunner.gnm1.ann1.G3VF9V Arachis hypogaea HOM05D005275 ORTHO05D006435 3.3e-51 206.1 359 42.9
Prupe.2G313400 Prunus persica HOM05D005275 ORTHO05D006435 9.6e-51 204.5 252 49.2
ATR0564G295 Amborella trichopoda HOM05D005275 ORTHO05D006435 2.1e-50 203.4 249 49.8
Medtr1g067700 Medicago truncatula HOM05D005275 ORTHO05D006435 4.8e-50 202.2 282 46.5
HPP92_008880 Vanilla planifolia HOM05D005275 ORTHO05D006435 1.8e-49 200.3 241 49.8
SGA_v2.0_scaffold55G19785 Striga asiatica HOM05D005275 ORTHO05D006435 3.1e-49 199.5 235 50.6
Zm00001eb199670 Zea mays HOM05D005275 ORTHO05D006435 3.1e-49 199.5 293 44.4
Gohir.D09G028700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.1e-45 186.8 247 49.0
Hma1.2p1_1507F.1_g287680 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 6.7e-44 181.8 180 57.2
CDE02G4591 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 3.1e-41 172.9 235 48.5
Gohir.A07G020100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.4e-40 169.5 221 48.9
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 7.6e-40 168.3 226 46.0
PGSC0003DMG400005324 Solanum tuberosum HOM05D005275 ORTHO05D006435 4.6e-37 159.1 238 42.4
unitig_62.g23847 Utricularia gibba HOM05D002066 ORTHO05D001617 5.1e-36 155.6 196 49.5
Dinv21061 Davidia involucrata HOM05D005275 ORTHO05D006435 6.7e-36 155.2 168 55.4
Sc20g0002940 Simmondsia chinensis HOM05D005275 ORTHO05D006435 2.5e-35 153.3 190 49.5
VMungo1383G0294 Vigna mungo HOM05D005275 ORTHO05D006435 9.7e-35 151.4 211 47.4
Gohir.A10G000100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 8.2e-34 148.3 196 49.5
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 1.4e-33 147.5 170 51.8
Oeu037051.1 Olea europaea HOM05D005275 ORTHO05D006435 1.4e-33 147.5 133 60.2
Ciclev10024016m.g Citrus clementina HOM05D005275 ORTHO05D006435 1.7e-31 140.6 90 75.6
Aa31LG3G9400 Aethionema arabicum HOM05D005275 ORTHO05D006435 3.2e-30 136.3 172 48.8
MELO3C019369.2 Cucumis melo HOM05D005275 ORTHO05D006435 5.5e-30 135.6 195 45.1
FvH4_7g32000 Fragaria vesca HOM05D005275 ORTHO05D006435 5.5e-30 135.6 176 47.2
Duzib128G1952 Durio zibethinus HOM05D005275 ORTHO05D006435 6.1e-29 132.1 183 48.6
Gohir.A12G032500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 6.7e-28 128.6 205 43.9
SMO334G0054 Selaginella moellendorffii HOM05D005275 ORTHO05D006435 1.1e-22 111.3 255 32.2
Pp3c9_14000 Physcomitrium patens HOM05D005275 ORTHO05D006435 3.2e-22 109.8 236 34.3
Mapoly0074s0056 Marchantia polymorpha HOM05D005275 ORTHO05D006435 5.5e-22 109.0 226 32.7
Sc21g0003940 Simmondsia chinensis HOM05D007402 ORTHO05D003673 1.6e-21 107.5 108 52.8
Zm00001eb089870 Zea mays HOM05D005275 ORTHO05D006435 2.1e-21 107.1 110 55.5
Zm00001eb397120 Zea mays HOM05D005275 ORTHO05D006435 2.7e-21 106.7 93 63.4
Lsat_1_v5_gn_9_70281 Lactuca sativa HOM05D005275 ORTHO05D006435 1.5e-19 100.9 197 38.6
SEGI_07593 Sequoiadendron giganteum HOM05D005275 ORTHO05D006435 3.3e-19 99.8 185 36.2
CBR_g30099 Chara braunii HOM05D005275 ORTHO05D006435 2.8e-18 96.7 237 31.6
Ciclev10023389m.g Citrus clementina HOM05D005275 ORTHO05D006435 5.0e-15 85.9 56 67.9
AagrBONN_evm.TU.Sc2ySwM_228.762 Anthoceros agrestis HOM05D005275 ORTHO05D006435 4.4e-11 72.8 167 32.3
QL09p008105 Quercus lobata HOM05D005275 ORTHO05D006435 3.7e-10 69.7 50 66.0
Aqoxy2G00110 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 7.0e-09 65.5 77 53.2
Lsat_1_v5_gn_9_123821 Lactuca sativa HOM05D002748 ORTHO05D002947 1.0e-07 61.6 46 65.2


User provided reference genes

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