Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0186000 Rhododendron simsii HOM05D000992 ORTHO05D001928 1.2e-79 299.7 146 100.0
Rhsim03G0185700 Rhododendron simsii HOM05D000368 ORTHO05D000289 6.5e-44 181.0 155 65.2
Rhsim03G0184800 Rhododendron simsii HOM05D000368 ORTHO05D000289 5.1e-41 171.4 90 90.0
vmacro00410 Vaccinium macrocarpon HOM05D000992 ORTHO05D001928 9.4e-35 150.6 108 68.5
Rhsim03G0185500 Rhododendron simsii HOM05D000992 ORTHO05D001928 3.6e-34 148.7 70 97.1
Actinidia04063 Actinidia chinensis HOM05D000992 ORTHO05D001928 1.9e-32 142.9 83 80.7
Actinidia18442 Actinidia chinensis HOM05D000992 ORTHO05D001928 1.9e-32 142.9 83 80.7
CSS0042156 Camellia sinensis var. sinensis HOM05D000992 ORTHO05D001928 4.3e-32 141.7 82 78.0
Dinv07657 Davidia involucrata HOM05D000269 ORTHO05D000216 7.4e-32 141.0 83 78.3
CSS0018449 Camellia sinensis var. sinensis HOM05D000992 ORTHO05D001928 2.2e-31 139.4 83 75.9
Dinv14423 Davidia involucrata HOM05D000992 ORTHO05D001928 2.2e-31 139.4 83 78.3
TAR629G1759 Trochodendron aralioides HOM05D000992 ORTHO05D001928 3.7e-31 138.7 83 75.9
Rhsim06G0241000 Rhododendron simsii HOM05D000992 ORTHO05D001928 4.8e-31 138.3 84 82.1
Hma1.2p1_1764F.1_g301400 Hydrangea macrophylla HOM05D000992 ORTHO05D001928 8.2e-31 137.5 83 75.9
Hma1.2p1_1346F.1_g277200 Hydrangea macrophylla HOM05D000992 ORTHO05D001928 3.1e-30 135.6 83 74.7
HanXRQChr11g0320951 Helianthus annuus HOM05D000992 ORTHO05D001928 3.4e-29 132.1 83 72.3
DCAR_000389 Daucus carota HOM05D000992 ORTHO05D001928 5.9e-29 131.3 84 70.2
Manes.15G128400 Manihot esculenta HOM05D000992 ORTHO05D001928 7.7e-29 131.0 83 71.1
Cfa008618 Carpinus fangiana HOM05D000992 ORTHO05D001928 1.3e-28 130.2 83 72.3
Manes.17G077900 Manihot esculenta HOM05D000992 ORTHO05D001928 1.3e-28 130.2 83 71.1
Potri.008G130300 Populus trichocarpa HOM05D000992 ORTHO05D001928 2.2e-28 129.4 83 69.9
PGR119G0308 Punica granatum HOM05D000992 ORTHO05D001928 2.2e-28 129.4 83 69.9
PGSC0003DMG400006156 Solanum tuberosum HOM05D000992 ORTHO05D001928 2.9e-28 129.0 83 69.9
ECA232G2145 Erigeron canadensis HOM05D000992 ORTHO05D001928 3.8e-28 128.6 83 69.9
TWI75G1486 Tripterygium wilfordii HOM05D000992 ORTHO05D001928 3.8e-28 128.6 83 69.9
GSVIVG01011745001 Vitis vinifera HOM05D000992 ORTHO05D001928 3.8e-28 128.6 83 68.7
Nn4g24190 Nelumbo nucifera HOM05D000992 ORTHO05D001928 5.0e-28 128.3 83 67.5
TAR371G0875 Trochodendron aralioides HOM05D000992 ORTHO05D001928 5.0e-28 128.3 82 70.7
CiPaw.06G011200 Carya illinoinensis HOM05D000992 ORTHO05D001928 6.5e-28 127.9 83 72.3
Potri.010G111800 Populus trichocarpa HOM05D000992 ORTHO05D001928 6.5e-28 127.9 83 69.9
Sabra08G0098900 Salix brachista HOM05D000992 ORTHO05D001928 1.1e-27 127.1 83 68.7
Sopen07g024400 Solanum pennellii HOM05D000992 ORTHO05D001928 1.4e-27 126.7 83 68.7
Oeu005277.1 Olea europaea HOM05D000992 ORTHO05D001928 2.5e-27 125.9 82 68.3
Actinidia04657 Actinidia chinensis HOM05D000992 ORTHO05D001928 3.2e-27 125.6 83 74.7
Sabra10G0082200 Salix brachista HOM05D000992 ORTHO05D001928 4.2e-27 125.2 82 69.5
Migut.E00433 Erythranthe guttata HOM05D000992 ORTHO05D001928 5.5e-27 124.8 108 53.7
Solyc07g047970.4 Solanum lycopersicum HOM05D000992 ORTHO05D001928 5.5e-27 124.8 83 67.5
Lsat_1_v5_gn_9_43601 Lactuca sativa HOM05D000992 ORTHO05D001928 7.2e-27 124.4 83 66.3
SGA_v2.0_scaffold257G45690 Striga asiatica HOM05D000992 ORTHO05D001928 7.2e-27 124.4 99 56.6
Atru.chr11.373 Acer truncatum HOM05D000992 ORTHO05D001928 1.6e-26 123.2 83 66.3
MBI16_g37742_MAGBIO Magnolia biondii HOM05D000992 ORTHO05D001928 4.7e-26 121.7 83 68.7
Sed0025111 Sechium edule HOM05D000992 ORTHO05D001928 4.7e-26 121.7 82 69.5
Aqoxy7G00061 Aquilegia oxysepala HOM05D000992 ORTHO05D001928 7.9e-26 120.9 83 62.7
Nitab4.5_0007845g0030 Nicotiana tabacum HOM05D000992 ORTHO05D001928 7.9e-26 120.9 83 63.9
SalBow8G2514 Salvia bowleyana HOM05D000992 ORTHO05D001928 1.0e-25 120.6 83 62.7
Duzib251G0427 Durio zibethinus HOM05D000992 ORTHO05D001928 1.8e-25 119.8 83 65.1
Nitab4.5_0000441g0190 Nicotiana tabacum HOM05D000992 ORTHO05D001928 1.8e-25 119.8 83 63.9
Peaxi162Scf00776g00324 Petunia axillaris HOM05D000992 ORTHO05D001928 1.8e-25 119.8 83 62.7
TWI31G0575 Tripterygium wilfordii HOM05D000992 ORTHO05D001928 1.8e-25 119.8 83 66.3
arahy.Tifrunner.gnm1.ann1.FYKT6P Arachis hypogaea HOM05D000992 ORTHO05D001928 2.3e-25 119.4 83 62.7
ClCG11G001240 Citrullus lanatus HOM05D000992 ORTHO05D001928 2.3e-25 119.4 109 56.0
arahy.Tifrunner.gnm1.ann1.MZBU3F Arachis hypogaea HOM05D000992 ORTHO05D001928 3.0e-25 119.0 84 60.7
Hund17156 Selenicereus undatus HOM05D000992 ORTHO05D001928 3.0e-25 119.0 86 65.1
Sc10g0008370 Simmondsia chinensis HOM05D000992 ORTHO05D001928 3.9e-25 118.6 82 67.1
SGA_v2.0_scaffold39G15183 Striga asiatica HOM05D000992 ORTHO05D001928 5.1e-25 118.2 82 63.4
CANSAT64G2027 Cannabis sativa HOM05D000992 ORTHO05D001928 1.1e-24 117.1 83 63.9
CsaV3_5G013310 Cucumis sativus L. HOM05D000992 ORTHO05D001928 1.1e-24 117.1 83 65.1
HanXRQChr02g0044681 Helianthus annuus HOM05D000992 ORTHO05D001928 1.1e-24 117.1 108 52.8
MBI04_g44511_MAGBIO Magnolia biondii HOM05D000992 ORTHO05D001928 1.1e-24 117.1 82 65.9
Thecc.02G282800 Theobroma cacao HOM05D000992 ORTHO05D001928 1.1e-24 117.1 108 51.9
ECA247G3162 Erigeron canadensis HOM05D000992 ORTHO05D001928 2.6e-24 115.9 108 52.8
Peaxi162Scf00276g00615 Petunia axillaris HOM05D000992 ORTHO05D001928 3.3e-24 115.5 83 65.1
RcHm_v2.0_Chr4g0441451 Rosa chinensis HOM05D000992 ORTHO05D001928 3.3e-24 115.5 83 63.9
Cpa.g.sc65.153 Carica papaya HOM05D000992 ORTHO05D001928 1.7e-23 113.2 109 50.5
THA.LOC104805068 Tarenaya hassleriana HOM05D000992 ORTHO05D001928 2.2e-23 112.8 108 52.8
unitig_22.g5587 Utricularia gibba HOM05D000992 ORTHO05D001928 2.2e-23 112.8 97 55.7
Ca_18738_v3 Cicer arietinum L. HOM05D000992 ORTHO05D001928 2.8e-23 112.5 85 61.2
Ca_30875_v3 Cicer arietinum L. HOM05D000992 ORTHO05D001928 2.8e-23 112.5 85 61.2
Ah.05g177390 Amaranthus hybridus HOM05D000992 ORTHO05D001928 3.7e-23 112.1 83 59.0
Gohir.A07G097700 Gossypium hirsutum HOM05D000992 ORTHO05D001928 3.7e-23 112.1 83 61.4
Gorai.001G109900 Gossypium raimondii HOM05D000992 ORTHO05D001928 4.8e-23 111.7 83 61.4
COL.COLO4_13161 Corchorus olitorius HOM05D000992 ORTHO05D001928 6.3e-23 111.3 108 51.9
Medtr4g084650 Medicago truncatula HOM05D000992 ORTHO05D001928 6.3e-23 111.3 87 57.5
EL10Ac1g00687 Beta vulgaris HOM05D000992 ORTHO05D001928 8.2e-23 110.9 108 49.1
AUR62023333 Chenopodium quinoa HOM05D000992 ORTHO05D001928 8.2e-23 110.9 83 60.2
Ciclev10015444m.g Citrus clementina HOM05D000992 ORTHO05D001928 8.2e-23 110.9 82 58.5
Eucgr.G02182 Eucalyptus grandis HOM05D000992 ORTHO05D001928 8.2e-23 110.9 92 55.4
PSO017G5972 Papaver somniferum HOM05D000992 ORTHO05D001928 8.2e-23 110.9 83 61.4
SalBow7G0291 Salvia bowleyana HOM05D000992 ORTHO05D001928 8.2e-23 110.9 84 63.1
Duzib248G0828 Durio zibethinus HOM05D000992 ORTHO05D001928 1.1e-22 110.5 83 59.0
Gohir.D07G102000 Gossypium hirsutum HOM05D000992 ORTHO05D001928 1.1e-22 110.5 83 60.2
SHI03261 Sapria himalayana HOM05D000992 ORTHO05D001928 1.1e-22 110.5 83 57.8
TPR.G27486 Trifolium pratense HOM05D000992 ORTHO05D001928 1.4e-22 110.2 85 60.0
QL01p001467 Quercus lobata HOM05D000992 ORTHO05D001928 1.8e-22 109.8 83 65.1
QL02p040832 Quercus lobata HOM05D000992 ORTHO05D001928 1.8e-22 109.8 83 65.1
Lj5g0010526 Lotus japonicus HOM05D000992 ORTHO05D001928 2.4e-22 109.4 85 62.4
AUR62038000 Chenopodium quinoa HOM05D000992 ORTHO05D001928 4.1e-22 108.6 83 59.0
PSO478G1659 Papaver somniferum HOM05D000992 ORTHO05D001928 4.1e-22 108.6 83 59.0
DCAR_030227 Daucus carota HOM05D000992 ORTHO05D001928 5.3e-22 108.2 82 59.8
SalBow1G5429 Salvia bowleyana HOM05D000992 ORTHO05D001928 5.3e-22 108.2 84 63.1
CDE02G4261 Ceratophyllum demersum HOM05D000992 ORTHO05D001928 9.1e-22 107.5 93 55.9
Lsat_1_v5_gn_1_4261 Lactuca sativa HOM05D000992 ORTHO05D001928 9.1e-22 107.5 108 50.0
PSO063G7085 Papaver somniferum HOM05D000992 ORTHO05D001928 1.2e-21 107.1 108 48.1
Haze_10992 Corylus avellana HOM05D000992 ORTHO05D001928 1.5e-21 106.7 82 65.9
Cc11_g08530 Coffea canephora HOM05D000992 ORTHO05D001928 2.0e-21 106.3 130 43.1
Sp2g12920 Schrenkiella parvula HOM05D000992 ORTHO05D001928 2.6e-21 105.9 105 47.6
PSO782G4161 Papaver somniferum HOM05D000992 ORTHO05D001928 3.4e-21 105.5 108 46.3
Glyma.07G218700 Glycine max HOM05D000992 ORTHO05D001928 4.5e-21 105.1 85 58.8
MD13G1024400 Malus domestica HOM05D000992 ORTHO05D001928 4.5e-21 105.1 83 59.0
Phvul.002G095100 Phaseolus vulgaris HOM05D000992 ORTHO05D001928 5.9e-21 104.8 111 52.3
MD16G1027100 Malus domestica HOM05D000992 ORTHO05D001928 7.7e-21 104.4 83 59.0
Aa31LG2G8460 Aethionema arabicum HOM05D000992 ORTHO05D001928 1.3e-20 103.6 83 57.8
QL11p050299 Quercus lobata HOM05D000992 ORTHO05D001928 1.3e-20 103.6 108 50.9
C02p49570 Brassica napus HOM05D000992 ORTHO05D001928 2.2e-20 102.8 105 47.6
ATR0579G172 Amborella trichopoda HOM05D000992 ORTHO05D001928 2.9e-20 102.4 78 57.7
Lalb_Chr16g0385011 Lupinus albus HOM05D000992 ORTHO05D001928 2.9e-20 102.4 84 58.3
VMungo0251G1193 Vigna mungo HOM05D000992 ORTHO05D001928 2.9e-20 102.4 86 60.5
A02p32000 Brassica napus HOM05D000992 ORTHO05D001928 5.0e-20 101.7 105 46.7
BolC2t11036H Brassica oleracea HOM05D000992 ORTHO05D001928 5.0e-20 101.7 105 47.6
BraA02t08211Z Brassica rapa HOM05D000992 ORTHO05D001928 5.0e-20 101.7 105 46.7
Prupe.1G326100 Prunus persica HOM05D000992 ORTHO05D001928 5.0e-20 101.7 70 68.6
BcaC03g17042 Brassica carinata HOM05D000992 ORTHO05D001928 6.5e-20 101.3 105 47.6
FAN17G2843 Fragaria x ananassa HOM05D000992 ORTHO05D001928 8.5e-20 100.9 83 56.6
Carub.0005s0043 Capsella rubella HOM05D000992 ORTHO05D001928 1.1e-19 100.5 111 47.7
BcaB07g30396 Brassica carinata HOM05D000992 ORTHO05D001928 1.4e-19 100.1 105 45.7
CARHR257330 Cardamine hirsuta HOM05D000992 ORTHO05D001928 1.4e-19 100.1 83 55.4
FAN07G2064 Fragaria x ananassa HOM05D000992 ORTHO05D001928 1.4e-19 100.1 83 56.6
Thhalv10000916m.g Eutrema salsugineum HOM05D000992 ORTHO05D001928 3.2e-19 99.0 98 50.0
FAN10G0326 Fragaria x ananassa HOM05D000992 ORTHO05D001928 3.2e-19 99.0 96 52.1
CiPaw.05G250700 Carya illinoinensis HOM05D000992 ORTHO05D001928 4.2e-19 98.6 70 62.9
FvH4_4g32580 Fragaria vesca HOM05D000992 ORTHO05D001928 4.2e-19 98.6 83 55.4
AT2G01470 Arabidopsis thaliana HOM05D000992 ORTHO05D001928 5.5e-19 98.2 109 46.8
FAN12G1857 Fragaria x ananassa HOM05D000992 ORTHO05D001928 9.4e-19 97.4 83 55.4
AL5G10450 Arabidopsis lyrata HOM05D000992 ORTHO05D001928 1.2e-18 97.1 111 45.9
AT5G50550 Arabidopsis thaliana HOM05D000992 ORTHO05D001928 1.6e-18 96.7 105 47.6
AT5G50650 Arabidopsis thaliana HOM05D000992 ORTHO05D001928 1.6e-18 96.7 105 47.6
Lalb_Chr05g0219541 Lupinus albus HOM05D000992 ORTHO05D001928 3.6e-18 95.5 84 56.0
MD08G1204700 Malus domestica HOM05D000992 ORTHO05D001928 8.0e-18 94.4 82 52.4
Os11g0610700 Oryza sativa ssp. japonica HOM05D000992 ORTHO05D001928 1.0e-17 94.0 108 39.8
BcaC06g31305 Brassica carinata HOM05D000992 ORTHO05D001928 2.3e-17 92.8 93 49.5
BraA06t27316Z Brassica rapa HOM05D000992 ORTHO05D001928 8.8e-17 90.9 95 49.5
BcaC06g34175 Brassica carinata HOM05D000992 ORTHO05D001928 1.1e-16 90.5 73 56.2
Zm00001eb166990 Zea mays HOM05D000992 ORTHO05D001928 1.1e-16 90.5 83 43.4
A06p44420 Brassica napus HOM05D000992 ORTHO05D001928 2.0e-16 89.7 95 49.5
CARHR143990 Cardamine hirsuta HOM05D000992 ORTHO05D001928 2.0e-16 89.7 99 45.5
BcaC06g34176 Brassica carinata HOM05D000137 ORTHO05D001928 4.4e-16 88.6 94 50.0
C07p31890 Brassica napus HOM05D000992 ORTHO05D001928 4.4e-16 88.6 94 50.0
Rhsim03G0184600 Rhododendron simsii HOM05D000992 ORTHO05D001928 9.7e-16 87.4 42 95.2
BolC7t43735H Brassica oleracea HOM05D000992 ORTHO05D001928 1.3e-15 87.0 94 48.9
HanXRQChr12g0377541 Helianthus annuus HOM05D000992 ORTHO05D001928 4.8e-15 85.1 83 50.6
HPP92_027233 Vanilla planifolia HOM05D000992 ORTHO05D001928 4.8e-15 85.1 85 48.2
FAN22G0786 Fragaria x ananassa HOM05D000992 ORTHO05D001928 1.4e-14 83.6 70 52.9
Hma1.2p1_3119F.1_g332850 Hydrangea macrophylla HOM05D000992 ORTHO05D001928 3.5e-13 79.0 78 51.3
SEGI_28359 Sequoiadendron giganteum HOM05D000992 ORTHO05D001928 2.9e-12 75.9 78 46.2
Mapoly0068s0040 Marchantia polymorpha HOM05D000992 ORTHO05D001928 1.1e-11 73.9 83 41.0
DCAR_007301 Daucus carota HOM05D000992 ORTHO05D001928 2.5e-11 72.8 52 65.4
Pp3c22_1410 Physcomitrium patens HOM05D000992 ORTHO05D001928 9.4e-11 70.9 78 43.6
Lj4g0026372 Lotus japonicus HOM05D000992 ORTHO05D001928 1.6e-10 70.1 56 57.1
Mapoly0009s0085 Marchantia polymorpha HOM05D000992 ORTHO05D001928 4.7e-10 68.6 81 45.7
SEGI_21673 Sequoiadendron giganteum HOM05D000992 ORTHO05D001928 4.7e-10 68.6 75 49.3
Pp3c21_8000 Physcomitrium patens HOM05D000992 ORTHO05D001928 6.1e-10 68.2 78 42.3
AagrBONN_evm.TU.Sc2ySwM_344.1223 Anthoceros agrestis HOM05D000992 ORTHO05D001928 2.3e-09 66.2 86 38.4
AagrBONN_evm.TU.Sc2ySwM_228.1087 Anthoceros agrestis HOM05D000992 ORTHO05D001928 4.0e-09 65.5 85 38.8
AagrBONN_evm.TU.Sc2ySwM_117.3805 Anthoceros agrestis HOM05D000992 ORTHO05D001928 6.7e-09 64.7 86 38.4
AagrBONN_evm.TU.Sc2ySwM_228.3928 Anthoceros agrestis HOM05D000001 ORTHO05D000003 8.8e-09 64.3 86 37.2
Pp3c13_12620 Physcomitrium patens HOM05D000992 ORTHO05D001928 2.6e-08 62.8 115 32.2
Pp3c3_15480 Physcomitrium patens HOM05D000992 ORTHO05D001928 3.3e-08 62.4 73 43.8
MBI08_g17991_MAGBIO Magnolia biondii HOM05D007170 ORTHO05D009243 7.5e-08 61.2 32 75.0
MBI17_g06174_MAGBIO Magnolia biondii HOM05D000992 ORTHO05D011152 9.7e-08 60.8 31 77.4
MBI13_g11344_MAGBIO Magnolia biondii HOM05D000992 ORTHO05D001928 2.8e-07 59.3 31 74.2
Oeu033441.1 Olea europaea HOM05D000992 ORTHO05D001928 2.8e-07 59.3 50 56.0
MBI07_g32656_MAGBIO Magnolia biondii HOM05D000992 ORTHO05D001928 8.2e-07 57.8 50 56.0
DCAR_022304 Daucus carota HOM05D000992 ORTHO05D001928 1.1e-06 57.4 70 44.3
AagrBONN_evm.TU.Sc2ySwM_117.3128 Anthoceros agrestis HOM05D000992 ORTHO05D001928 1.8e-06 56.6 69 44.9
FAN10G1773 Fragaria x ananassa HOM05D000992 ORTHO05D001928 3.1e-06 55.8 49 51.0
HanXRQChr14g0456231 Helianthus annuus HOM05D000992 ORTHO05D001928 9.1e-06 54.3 72 40.3


User provided reference genes

Program Settings