Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0180800 Rhododendron simsii HOM05D005579 ORTHO05D006775 0.0e+00 2629.7 1327 100.0
Actinidia32860 Actinidia chinensis HOM05D005579 ORTHO05D006775 0.0e+00 1473.4 1454 58.0
Dinv28443 Davidia involucrata HOM05D005579 ORTHO05D006775 4.9e-300 1035.0 1419 44.9
Prupe.2G294300 Prunus persica HOM05D005579 ORTHO05D006775 1.8e-281 973.4 1384 45.1
CSS0017636 Camellia sinensis var. sinensis HOM05D005579 ORTHO05D006775 1.5e-280 970.3 1177 49.8
Potri.012G141100 Populus trichocarpa HOM05D005579 ORTHO05D006775 1.4e-278 963.8 1373 46.1
CSS0047196 Camellia sinensis var. sinensis HOM05D005579 ORTHO05D006775 1.0e-276 957.6 1177 49.6
Sabra12G0106200 Salix brachista HOM05D005579 ORTHO05D006775 5.5e-267 925.2 1384 45.0
Cfa008319 Carpinus fangiana HOM05D005579 ORTHO05D006775 7.2e-267 924.9 1647 39.6
TAR367G0001 Trochodendron aralioides HOM05D005579 ORTHO05D006775 2.6e-264 916.4 1662 38.3
CiPaw.04G071000 Carya illinoinensis HOM05D005579 ORTHO05D006775 9.4e-259 897.9 1642 38.1
MD07G1268700 Malus domestica HOM05D005579 ORTHO05D006775 2.9e-252 876.3 1401 42.4
QL09p014220 Quercus lobata HOM05D005579 ORTHO05D006775 3.6e-250 869.4 1480 40.3
Manes.06G147100 Manihot esculenta HOM05D005579 ORTHO05D006775 3.7e-247 859.4 1362 42.1
CANSAT21G2370 Cannabis sativa HOM05D005579 ORTHO05D006775 6.3e-247 858.6 1381 42.1
FvH4_7g29470 Fragaria vesca HOM05D005579 ORTHO05D006775 1.7e-244 850.5 1416 40.7
DCAR_018198 Daucus carota HOM05D005579 ORTHO05D006775 9.5e-243 844.7 1590 37.0
Duzib068G1336 Durio zibethinus HOM05D005579 ORTHO05D006775 1.2e-242 844.3 1658 36.1
RcHm_v2.0_Chr1g0377251 Rosa chinensis HOM05D005579 ORTHO05D006775 1.6e-242 844.0 1403 40.7
Migut.F00340 Erythranthe guttata HOM05D005579 ORTHO05D006775 2.8e-242 843.2 1371 41.7
GSVIVG01028977001 Vitis vinifera HOM05D005579 ORTHO05D006775 2.0e-240 837.0 1598 37.6
COL.COLO4_14309 Corchorus olitorius HOM05D005579 ORTHO05D006775 1.1e-238 831.2 1597 37.5
FAN01G1040 Fragaria x ananassa HOM05D005579 ORTHO05D006775 5.9e-237 825.5 1414 40.6
FAN06G0670 Fragaria x ananassa HOM05D005579 ORTHO05D006775 5.6e-235 818.9 1448 39.6
FAN03G0333 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.2e-234 817.8 1417 40.8
FAN03G0790 Fragaria x ananassa HOM05D005579 ORTHO05D006775 2.0e-232 810.4 1437 40.1
SGA_v2.0_scaffold60G21038 Striga asiatica HOM05D005579 ORTHO05D006775 1.4e-230 804.3 1355 40.0
Ciclev10006492m.g Citrus clementina HOM05D005579 ORTHO05D006775 1.6e-229 800.8 1639 35.6
FAN06G0715 Fragaria x ananassa HOM05D005579 ORTHO05D006775 5.6e-227 792.3 1355 40.1
Thecc.03G176600 Theobroma cacao HOM05D005579 ORTHO05D006775 2.8e-226 790.0 1499 37.6
Hma1.2p1_0270F.1_g108020 Hydrangea macrophylla HOM05D005579 ORTHO05D006775 3.2e-222 776.5 745 58.5
Peaxi162Scf00444g00841 Petunia axillaris HOM05D005579 ORTHO05D006775 3.9e-220 769.6 1675 33.9
ECA232G1470 Erigeron canadensis HOM05D005579 ORTHO05D006775 6.2e-218 762.3 1362 40.7
SalBow4G1821 Salvia bowleyana HOM05D005579 ORTHO05D006775 2.3e-217 760.4 1423 38.4
SalBow4G2278 Salvia bowleyana HOM05D005579 ORTHO05D006775 4.0e-217 759.6 1420 38.1
Gohir.D12G259200 Gossypium hirsutum HOM05D005579 ORTHO05D006775 4.1e-214 749.6 1761 33.4
Nn6g33500 Nelumbo nucifera HOM05D005579 ORTHO05D006775 4.6e-213 746.1 1678 34.0
Gohir.A12G257850 Gossypium hirsutum HOM05D005579 ORTHO05D006775 3.4e-208 729.9 1703 33.4
Nitab4.5_0000716g0010 Nicotiana tabacum HOM05D005579 ORTHO05D006775 1.9e-206 724.2 1651 33.2
PSO063G6446 Papaver somniferum HOM05D005579 ORTHO05D006775 3.9e-204 716.5 1363 36.5
Cc02_g02990 Coffea canephora HOM05D005579 ORTHO05D006775 8.6e-204 715.3 1469 34.9
Cpa.g.sc107.52 Carica papaya HOM05D005579 ORTHO05D006775 1.1e-203 714.9 1648 34.1
Sopen03g004630 Solanum pennellii HOM05D005579 ORTHO05D006775 3.3e-203 713.4 1667 33.8
PSO782G1268 Papaver somniferum HOM05D005579 ORTHO05D006775 6.2e-202 709.1 1360 36.9
Gorai.008G277600 Gossypium raimondii HOM05D005579 ORTHO05D006775 5.2e-201 706.1 1735 32.8
Lsat_1_v5_gn_9_55980 Lactuca sativa HOM05D005579 ORTHO05D006775 2.6e-200 703.7 1368 38.2
Nitab4.5_0009681g0030 Nicotiana tabacum HOM05D005579 ORTHO05D006775 7.6e-200 702.2 1642 33.4
Solyc03g025820.3 Solanum lycopersicum HOM05D005579 ORTHO05D006775 2.7e-197 693.7 1668 33.3
Haze_13712 Corylus avellana HOM05D005579 ORTHO05D006775 7.8e-197 692.2 733 55.7
TWI23G0169 Tripterygium wilfordii HOM05D005579 ORTHO05D006775 2.8e-194 683.7 1679 32.6
Sed0022815 Sechium edule HOM05D005579 ORTHO05D006775 4.0e-193 679.9 1661 33.2
Atru.chr1.458 Acer truncatum HOM05D005579 ORTHO05D006775 4.2e-182 643.3 736 52.4
HanXRQChr15g0495541 Helianthus annuus HOM05D005579 ORTHO05D006775 3.9e-180 636.7 1180 39.8
AUR62021193 Chenopodium quinoa HOM05D005579 ORTHO05D006775 6.7e-180 636.0 1270 35.6
AUR62015985 Chenopodium quinoa HOM05D005579 ORTHO05D006775 1.5e-179 634.8 1326 34.9
Lj2g0003134 Lotus japonicus HOM05D005579 ORTHO05D006775 1.5e-179 634.8 1643 32.4
CAN.G490.30 Capsicum annuum HOM05D005579 ORTHO05D006775 3.3e-179 633.6 1486 32.8
Sc13g0008650 Simmondsia chinensis HOM05D005579 ORTHO05D006775 5.3e-177 626.3 1485 33.4
FAN10G2011 Fragaria x ananassa HOM05D005579 ORTHO05D006775 7.9e-173 612.5 1010 42.1
EL10Ac3g05643 Beta vulgaris HOM05D005579 ORTHO05D006775 1.3e-172 611.7 1726 29.9
MELO3C003322.2 Cucumis melo HOM05D005579 ORTHO05D006775 7.4e-171 605.9 1632 33.1
ClCG09G012930 Citrullus lanatus HOM05D005579 ORTHO05D006775 3.7e-170 603.6 1693 31.1
Glyma.09G139400 Glycine max HOM05D005579 ORTHO05D006775 2.5e-166 590.9 1602 31.3
PGR142G3926 Punica granatum HOM05D005579 ORTHO05D006775 3.2e-166 590.5 1676 32.0
Ah.07g207210 Amaranthus hybridus HOM05D005579 ORTHO05D006775 6.1e-165 586.3 1667 29.8
MD01G1200800 Malus domestica HOM05D005579 ORTHO05D006775 2.8e-162 577.4 1035 39.6
CsaV3_3G049940 Cucumis sativus L. HOM05D005579 ORTHO05D006775 6.3e-162 576.2 1702 31.6
Phvul.004G117000 Phaseolus vulgaris HOM05D005579 ORTHO05D006775 1.1e-161 575.5 1615 30.2
Sp6g14550 Schrenkiella parvula HOM05D005579 ORTHO05D006775 1.8e-161 574.7 1650 30.7
arahy.Tifrunner.gnm1.ann1.TEHT7Q Arachis hypogaea HOM05D005579 ORTHO05D006775 4.1e-161 573.5 1158 37.0
Aa31LG3G8710 Aethionema arabicum HOM05D005579 ORTHO05D006775 2.6e-160 570.9 1647 31.4
arahy.Tifrunner.gnm1.ann1.Q0IWYL Arachis hypogaea HOM05D005579 ORTHO05D006775 2.9e-159 567.4 1153 37.3
VMungo0464G1636 Vigna mungo HOM05D005579 ORTHO05D006775 3.8e-159 567.0 1626 30.3
CARHR265270 Cardamine hirsuta HOM05D005579 ORTHO05D006775 2.5e-158 564.3 1653 29.8
AL8G26680 Arabidopsis lyrata HOM05D005579 ORTHO05D006775 5.5e-158 563.1 1642 30.8
Thhalv10015364m.g Eutrema salsugineum HOM05D005579 ORTHO05D006775 2.1e-157 561.2 1660 30.2
AT5G52290 Arabidopsis thaliana HOM05D005579 ORTHO05D006775 1.5e-155 555.1 1642 30.6
Lalb_Chr19g0130861 Lupinus albus HOM05D005579 ORTHO05D006775 3.1e-153 547.4 1227 33.8
C03p18410 Brassica napus HOM05D005579 ORTHO05D006775 6.9e-153 546.2 1655 30.1
Carub.0008s1239 Capsella rubella HOM05D005579 ORTHO05D006775 3.4e-152 543.9 1636 31.1
PGSC0003DMG400014341 Solanum tuberosum HOM05D005579 ORTHO05D006775 5.9e-152 543.1 678 47.8
AL271U10020 Arabidopsis lyrata HOM05D005579 ORTHO05D006775 7.7e-152 542.7 1679 30.5
THA.LOC104800252 Tarenaya hassleriana HOM05D005579 ORTHO05D006775 4.2e-150 537.0 1665 30.2
Psat0s2227g0080 Pisum sativum HOM05D005579 ORTHO05D006775 7.2e-150 536.2 1704 29.3
BcaC01g06176 Brassica carinata HOM05D005579 ORTHO05D006775 9.4e-150 535.8 1652 30.1
A03p15740 Brassica napus HOM05D005579 ORTHO05D006775 1.4e-148 531.9 1644 30.0
BcaB01g04199 Brassica carinata HOM05D005579 ORTHO05D006775 2.6e-147 527.7 1656 29.6
TPR.G10740 Trifolium pratense HOM05D005579 ORTHO05D006775 2.4e-145 521.2 1729 28.0
BolC3t14238H Brassica oleracea HOM05D005579 ORTHO05D006775 9.1e-145 519.2 1725 28.9
MBI17_g39341_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 5.9e-144 516.5 712 45.4
BraA03t10864Z Brassica rapa HOM05D005579 ORTHO05D006775 3.6e-141 507.3 1708 28.9
Eucgr.L01677 Eucalyptus grandis HOM05D005579 ORTHO05D006775 6.1e-141 506.5 672 46.9
Medtr6g045357 Medicago truncatula HOM05D005579 ORTHO05D006775 6.3e-130 469.9 1582 28.4
SHI39775 Sapria himalayana HOM05D005579 ORTHO05D006775 1.8e-121 441.8 1235 31.7
unitig_37.g12526 Utricularia gibba HOM05D005579 ORTHO05D006775 6.4e-106 390.2 1351 29.4
ATR0680G156 Amborella trichopoda HOM05D005579 ORTHO05D006775 7.8e-104 383.3 776 36.9
FAN10G0535 Fragaria x ananassa HOM05D005579 ORTHO05D006775 2.4e-92 345.1 503 44.3
Haze_13711 Corylus avellana HOM05D005579 ORTHO05D006775 2.4e-89 335.1 489 41.5
MBI17_g46332_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 1.6e-85 322.4 1138 27.9
Oeu056255.1 Olea europaea HOM05D005579 ORTHO05D006775 1.7e-82 312.4 1056 28.3
Os02g0642600 Oryza sativa ssp. japonica HOM05D005579 ORTHO05D006775 2.8e-77 295.0 691 35.9
Zm00001eb248620 Zea mays HOM05D005579 ORTHO05D006775 6.4e-74 283.9 733 33.4
Hund11748 Selenicereus undatus HOM05D005579 ORTHO05D006775 1.2e-67 263.1 512 38.5
CDE08G1090 Ceratophyllum demersum HOM05D005579 ORTHO05D006775 4.3e-62 244.6 804 27.4
CDE08G0179 Ceratophyllum demersum HOM05D005579 ORTHO05D006775 2.6e-59 235.3 586 35.3
HPP92_008526 Vanilla planifolia HOM05D005579 ORTHO05D006775 3.9e-55 221.5 201 59.2
Actinidia34112 Actinidia chinensis HOM05D005579 ORTHO05D006775 2.2e-53 215.7 147 76.2
Ca_25744_v3 Cicer arietinum L. HOM05D005579 ORTHO05D006775 3.6e-48 198.4 453 31.6
SMO364G0179 Selaginella moellendorffii HOM05D005579 ORTHO05D006775 2.8e-45 188.7 243 43.6
MBI17_g46331_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 1.1e-41 176.8 283 38.9
Pp3c21_13440 Physcomitrium patens HOM05D005579 ORTHO05D006775 3.9e-31 141.7 591 26.4
Pp3c13_14750 Physcomitrium patens HOM05D005579 ORTHO05D006775 3.3e-30 138.7 228 35.5
Mapoly0013s0198 Marchantia polymorpha HOM05D005579 ORTHO05D006775 1.3e-29 136.7 230 33.5
TAR375G0314 Trochodendron aralioides HOM05D005579 ORTHO05D006775 2.0e-27 129.4 219 38.4
Dinv28442 Davidia involucrata HOM05D005579 ORTHO05D006775 1.9e-25 122.9 198 40.9
MD01G1200900 Malus domestica HOM05D005579 ORTHO05D006775 3.8e-18 98.6 304 31.2
RhsimUnG0080900 Rhododendron simsii HOM05D006410 ORTHO05D007914 8.0e-16 90.9 64 73.4
RhsimUnG0096900 Rhododendron simsii HOM05D001571 ORTHO05D002889 1.8e-12 79.7 66 62.1
FAN10G3029 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.6e-11 76.6 89 50.6
Ah.07g206970 Amaranthus hybridus HOM05D005579 ORTHO05D006775 4.5e-11 75.1 161 35.4
FvH4_7g29490 Fragaria vesca HOM05D005579 ORTHO05D006775 5.9e-11 74.7 89 48.3
FAN06G4680 Fragaria x ananassa HOM05D005579 ORTHO05D006775 5.9e-11 74.7 89 48.3
Oeu024225.1 Olea europaea HOM05D002251 ORTHO05D006775 3.8e-10 72.0 282 30.5
CBR_g61457 Chara braunii HOM05D005579 ORTHO05D006775 8.6e-10 70.9 145 31.7
TPR.G17624 Trifolium pratense HOM05D005579 ORTHO05D006775 1.9e-09 69.7 157 32.5
QL09p014214 Quercus lobata HOM05D005579 ORTHO05D006775 5.5e-09 68.2 213 30.5
MBI17_g46440_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D048546 4.7e-08 65.1 146 37.0
FAN06G4979 Fragaria x ananassa HOM05D005579 ORTHO05D006775 6.1e-08 64.7 89 44.9
TPR.G31959 Trifolium pratense HOM05D061576 ORTHO05D006775 1.8e-07 63.2 138 30.4
SalBow1G5008 Salvia bowleyana HOM05D045082 ORTHO05D006775 3.4e-06 58.9 108 40.7
SalBow1G5207 Salvia bowleyana HOM05D045082 ORTHO05D006775 3.4e-06 58.9 108 40.7


User provided reference genes

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