Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0084400 Rhododendron simsii HOM05D003451 ORTHO05D003918 3.9e-38 161.0 82 100.0
Rhsim01G0192600 Rhododendron simsii HOM05D003451 ORTHO05D003918 3.1e-35 151.4 81 95.1
vmacro04126 Vaccinium macrocarpon HOM05D003451 ORTHO05D003918 2.6e-26 121.7 84 77.4
Hma1.2p1_0390F.1_g142550 Hydrangea macrophylla HOM05D003451 ORTHO05D003918 2.9e-25 118.2 91 72.5
Rhsim13G0217600 Rhododendron simsii HOM05D006939 ORTHO05D008616 2.9e-25 118.2 81 77.8
CSS0013826 Camellia sinensis var. sinensis HOM05D003451 ORTHO05D003918 1.1e-24 116.3 87 74.7
Actinidia11670 Actinidia chinensis HOM05D003451 ORTHO05D003918 1.4e-24 115.9 86 76.7
Actinidia23979 Actinidia chinensis HOM05D003451 ORTHO05D003918 3.2e-24 114.8 86 75.6
Actinidia06925 Actinidia chinensis HOM05D003451 ORTHO05D003918 9.3e-24 113.2 85 71.8
Dinv36234 Davidia involucrata HOM05D003451 ORTHO05D003918 1.6e-23 112.5 88 71.6
Lj7A514T32 Lonicera japonica HOM05D003451 ORTHO05D003918 2.1e-23 112.1 91 70.3
CSS0010395 Camellia sinensis var. sinensis HOM05D003451 ORTHO05D003918 1.8e-22 109.0 91 68.1
GSVIVG01026504001 Vitis vinifera HOM05D003451 ORTHO05D003918 3.0e-22 108.2 91 70.3
CSS0014106 Camellia sinensis var. sinensis HOM05D003451 ORTHO05D003918 6.7e-22 107.1 90 67.8
Nitab4.5_0000159g0090 Nicotiana tabacum HOM05D003451 ORTHO05D003918 6.7e-22 107.1 85 70.6
Nitab4.5_0000531g0010 Nicotiana tabacum HOM05D003451 ORTHO05D003918 6.7e-22 107.1 85 70.6
Potri.009G051000 Populus trichocarpa HOM05D003451 ORTHO05D003918 8.7e-22 106.7 92 68.5
Sabra16G0156600 Salix brachista HOM05D003451 ORTHO05D003918 1.1e-21 106.3 92 68.5
HanXRQChr13g0401231 Helianthus annuus HOM05D003451 ORTHO05D003918 1.5e-21 105.9 90 68.9
Nn2g15160 Nelumbo nucifera HOM05D003451 ORTHO05D003918 1.5e-21 105.9 88 69.3
TAR369G0018 Trochodendron aralioides HOM05D003451 ORTHO05D003918 1.5e-21 105.9 87 66.7
CSS0020415 Camellia sinensis var. sinensis HOM05D003451 ORTHO05D003918 1.9e-21 105.5 91 67.0
CSS0015848 Camellia sinensis var. sinensis HOM05D003451 ORTHO05D003918 2.5e-21 105.1 91 67.0
Potri.001G255600 Populus trichocarpa HOM05D003451 ORTHO05D003918 3.3e-21 104.8 92 67.4
Lsat_1_v5_gn_1_49181 Lactuca sativa HOM05D003451 ORTHO05D003918 4.3e-21 104.4 85 68.2
Manes.14G004400 Manihot esculenta HOM05D003451 ORTHO05D003918 4.3e-21 104.4 88 70.5
Nn7g36360 Nelumbo nucifera HOM05D003451 ORTHO05D003918 4.3e-21 104.4 88 69.3
Cc01_g05030 Coffea canephora HOM05D003451 ORTHO05D003918 1.3e-20 102.8 86 67.4
CSS0003600 Camellia sinensis var. sinensis HOM05D003451 ORTHO05D003918 1.6e-20 102.4 89 67.4
Manes.06G162200 Manihot esculenta HOM05D003451 ORTHO05D003918 1.6e-20 102.4 89 68.5
Eucgr.J00743 Eucalyptus grandis HOM05D003451 ORTHO05D003918 2.1e-20 102.1 89 66.3
Sc09g0000810 Simmondsia chinensis HOM05D003451 ORTHO05D003918 2.1e-20 102.1 89 67.4
HanXRQChr11g0351591 Helianthus annuus HOM05D003451 ORTHO05D003918 1.1e-19 99.8 91 64.8
TAR623G1024 Trochodendron aralioides HOM05D003451 ORTHO05D003918 3.1e-19 98.2 88 64.8
Sc06g0004640 Simmondsia chinensis HOM05D003451 ORTHO05D003918 4.0e-19 97.8 85 68.2
Lsat_1_v5_gn_6_25861 Lactuca sativa HOM05D003451 ORTHO05D003918 5.3e-19 97.4 87 63.2
Oeu001483.1 Olea europaea HOM05D003451 ORTHO05D003918 6.9e-19 97.1 89 62.9
DCAR_019964 Daucus carota HOM05D003451 ORTHO05D003918 9.0e-19 96.7 78 67.9
Solyc06g065470.4 Solanum lycopersicum HOM05D003451 ORTHO05D003918 9.0e-19 96.7 84 66.7
Sopen06g023960 Solanum pennellii HOM05D003451 ORTHO05D003918 9.0e-19 96.7 84 66.7
PGSC0003DMG400026119 Solanum tuberosum HOM05D003451 ORTHO05D003918 9.0e-19 96.7 84 66.7
Aqoxy2G00229 Aquilegia oxysepala HOM05D003451 ORTHO05D003918 1.2e-18 96.3 87 65.5
ClCG03G013000 Citrullus lanatus HOM05D003451 ORTHO05D003918 1.2e-18 96.3 90 65.6
Lj2C624T2 Lonicera japonica HOM05D003451 ORTHO05D003918 1.2e-18 96.3 81 64.2
Lj5C793G3 Lonicera japonica HOM05D003451 ORTHO05D003918 1.2e-18 96.3 81 64.2
Sed0009927 Sechium edule HOM05D003451 ORTHO05D003918 1.2e-18 96.3 90 65.6
Thecc.09G245200 Theobroma cacao HOM05D003451 ORTHO05D003918 1.2e-18 96.3 87 66.7
MSTRG.12458 Avicennia marina HOM05D003451 ORTHO05D003918 2.0e-18 95.5 88 64.8
Nitab4.5_0003160g0010 Nicotiana tabacum HOM05D003451 ORTHO05D003918 2.0e-18 95.5 82 65.9
Gohir.A09G110960 Gossypium hirsutum HOM05D003451 ORTHO05D003918 2.6e-18 95.1 87 65.5
Gorai.006G125200 Gossypium raimondii HOM05D003451 ORTHO05D003918 2.6e-18 95.1 87 65.5
Cpa.g.sc84.26 Carica papaya HOM05D003451 ORTHO05D003918 3.4e-18 94.7 88 64.8
MELO3C015160.2 Cucumis melo HOM05D003451 ORTHO05D003918 3.4e-18 94.7 90 64.4
CsaV3_1G043070 Cucumis sativus L. HOM05D003451 ORTHO05D003918 3.4e-18 94.7 90 64.4
Nitab4.5_0003158g0010 Nicotiana tabacum HOM05D003451 ORTHO05D003918 3.4e-18 94.7 82 65.9
MSTRG.17605 Avicennia marina HOM05D003451 ORTHO05D003918 5.8e-18 94.0 83 63.9
CDE08G1345 Ceratophyllum demersum HOM05D003451 ORTHO05D003918 5.8e-18 94.0 91 60.4
ECA233G6223 Erigeron canadensis HOM05D003451 ORTHO05D003918 5.8e-18 94.0 92 63.0
Gohir.A13G218200 Gossypium hirsutum HOM05D003451 ORTHO05D003918 7.6e-18 93.6 89 67.4
AUR62039863 Chenopodium quinoa HOM05D003451 ORTHO05D003918 1.0e-17 93.2 88 65.9
CDE09G0232 Ceratophyllum demersum HOM05D003451 ORTHO05D003918 1.7e-17 92.4 91 59.3
Gohir.D13G221900 Gossypium hirsutum HOM05D003451 ORTHO05D003918 1.7e-17 92.4 89 66.3
Gorai.013G253000 Gossypium raimondii HOM05D003451 ORTHO05D003918 1.7e-17 92.4 89 66.3
SalBow1G0548 Salvia bowleyana HOM05D003451 ORTHO05D003918 1.7e-17 92.4 85 63.5
SalBow1G0865 Salvia bowleyana HOM05D003451 ORTHO05D003918 1.7e-17 92.4 85 63.5
SalBow1G4695 Salvia bowleyana HOM05D003451 ORTHO05D003918 1.7e-17 92.4 85 63.5
THA.LOC104816872 Tarenaya hassleriana HOM05D003451 ORTHO05D003918 2.2e-17 92.0 88 65.9
Lalb_Chr09g0320421 Lupinus albus HOM05D003451 ORTHO05D003918 2.9e-17 91.7 89 64.0
Migut.D00628 Erythranthe guttata HOM05D003451 ORTHO05D003918 3.8e-17 91.3 86 61.6
Gohir.D09G107600 Gossypium hirsutum HOM05D003451 ORTHO05D003918 3.8e-17 91.3 87 64.4
LjContig00222g0014229 Lotus japonicus HOM05D003451 ORTHO05D003918 3.8e-17 91.3 83 67.5
TWI34G0098 Tripterygium wilfordii HOM05D003451 ORTHO05D003918 4.9e-17 90.9 87 64.4
VMungo1215G1947 Vigna mungo HOM05D003451 ORTHO05D003918 6.5e-17 90.5 81 67.9
HanXRQChr01g0029351 Helianthus annuus HOM05D003451 ORTHO05D003918 8.4e-17 90.1 88 62.5
Glyma.01G227300 Glycine max HOM05D003451 ORTHO05D003918 1.1e-16 89.7 77 68.8
Phvul.002G034400 Phaseolus vulgaris HOM05D003451 ORTHO05D003918 1.1e-16 89.7 81 66.7
Ah.06g193890 Amaranthus hybridus HOM05D003451 ORTHO05D003918 1.4e-16 89.4 87 63.2
Ciclev10016808m.g Citrus clementina HOM05D003451 ORTHO05D003918 1.4e-16 89.4 87 64.4
Glyma.11G015500 Glycine max HOM05D003451 ORTHO05D003918 1.4e-16 89.4 83 66.3
CANSAT54G1907 Cannabis sativa HOM05D003451 ORTHO05D003918 1.9e-16 89.0 89 62.9
Haze_23175 Corylus avellana HOM05D003451 ORTHO05D003918 1.9e-16 89.0 94 64.9
Duzib168G0102 Durio zibethinus HOM05D003451 ORTHO05D003918 1.9e-16 89.0 87 65.5
Gohir.A05G073100 Gossypium hirsutum HOM05D003451 ORTHO05D003918 1.9e-16 89.0 87 63.2
Medtr5g008890 Medicago truncatula HOM05D003451 ORTHO05D003918 1.9e-16 89.0 77 64.9
TWI32G0677 Tripterygium wilfordii HOM05D003451 ORTHO05D003918 1.9e-16 89.0 87 64.4
AUR62000152 Chenopodium quinoa HOM05D003451 ORTHO05D003918 2.5e-16 88.6 88 63.6
SGA_v2.0_scaffold42G16078 Striga asiatica HOM05D003451 ORTHO05D003918 2.5e-16 88.6 88 58.0
EL10Ac4g10211 Beta vulgaris HOM05D003451 ORTHO05D003918 4.2e-16 87.8 92 60.9
COL.COLO4_37539 Corchorus olitorius HOM05D003451 ORTHO05D003918 4.2e-16 87.8 86 62.8
SalBow6G3934 Salvia bowleyana HOM05D003451 ORTHO05D003918 4.2e-16 87.8 85 61.2
Hund07469 Selenicereus undatus HOM05D003451 ORTHO05D003918 4.2e-16 87.8 85 61.2
SGA_v2.0_scaffold3G01477 Striga asiatica HOM05D003451 ORTHO05D003918 4.2e-16 87.8 88 60.2
arahy.Tifrunner.gnm1.ann1.KKL1UE Arachis hypogaea HOM05D003451 ORTHO05D003918 5.5e-16 87.4 83 65.1
arahy.Tifrunner.gnm1.ann1.ZE8HJS Arachis hypogaea HOM05D003451 ORTHO05D003918 5.5e-16 87.4 83 65.1
Cfa009811 Carpinus fangiana HOM05D003451 ORTHO05D003918 7.1e-16 87.0 94 63.8
Migut.N02344 Erythranthe guttata HOM05D003451 ORTHO05D003918 7.1e-16 87.0 88 60.2
Gohir.D05G076000 Gossypium hirsutum HOM05D003451 ORTHO05D003918 7.1e-16 87.0 87 62.1
Gorai.009G077300 Gossypium raimondii HOM05D003451 ORTHO05D003918 7.1e-16 87.0 87 62.1
THA.LOC104817916 Tarenaya hassleriana HOM05D003451 ORTHO05D003918 7.1e-16 87.0 88 64.8
HPP92_003156 Vanilla planifolia HOM05D003451 ORTHO05D003918 7.1e-16 87.0 88 56.8
Hund07468 Selenicereus undatus HOM05D003451 ORTHO05D003918 9.3e-16 86.7 86 62.8
MD03G1171900 Malus domestica HOM05D003451 ORTHO05D003918 1.2e-15 86.3 88 60.2
CiPaw.13G154800 Carya illinoinensis HOM05D003451 ORTHO05D003918 1.6e-15 85.9 86 64.0
Lalb_Chr16g0376831 Lupinus albus HOM05D003451 ORTHO05D003918 2.7e-15 85.1 89 61.8
PSO675G7264 Papaver somniferum HOM05D003451 ORTHO05D003918 2.7e-15 85.1 89 60.7
Ca_24487_v3 Cicer arietinum L. HOM05D003451 ORTHO05D003918 6.0e-15 84.0 80 62.5
MD11G1189700 Malus domestica HOM05D003451 ORTHO05D003918 6.0e-15 84.0 88 59.1
Psat2g186200 Pisum sativum HOM05D003451 ORTHO05D003918 6.0e-15 84.0 80 62.5
Aa31LG10G3250 Aethionema arabicum HOM05D003451 ORTHO05D003918 7.9e-15 83.6 90 62.2
CiPaw.14G116900 Carya illinoinensis HOM05D003451 ORTHO05D003918 7.9e-15 83.6 90 58.9
Duzib170G0373 Durio zibethinus HOM05D003451 ORTHO05D003918 7.9e-15 83.6 87 60.9
A05p19520 Brassica napus HOM05D003451 ORTHO05D003918 1.0e-14 83.2 87 60.9
BraA05t20856Z Brassica rapa HOM05D003451 ORTHO05D003918 1.0e-14 83.2 87 60.9
PSO541G4141 Papaver somniferum HOM05D003451 ORTHO05D003918 1.0e-14 83.2 89 59.6
THA.LOC104811180 Tarenaya hassleriana HOM05D003451 ORTHO05D003918 1.0e-14 83.2 84 63.1
Atru.chr3.2648 Acer truncatum HOM05D003451 ORTHO05D003918 1.3e-14 82.8 85 62.4
Peaxi162Scf00268g01431 Petunia axillaris HOM05D003451 ORTHO05D003918 1.3e-14 82.8 80 61.2
ECA248G3198 Erigeron canadensis HOM05D003451 ORTHO05D003918 3.9e-14 81.3 76 64.5
PGR102G1026 Punica granatum HOM05D003451 ORTHO05D003918 3.9e-14 81.3 84 59.5
RcHm_v2.0_Chr5g0053031 Rosa chinensis HOM05D003451 ORTHO05D003918 3.9e-14 81.3 75 64.0
A08p02680 Brassica napus HOM05D003451 ORTHO05D003918 6.7e-14 80.5 87 59.8
SEGI_31792 Sequoiadendron giganteum HOM05D003451 ORTHO05D003918 1.1e-13 79.7 103 50.5
BraA08t32308Z Brassica rapa HOM05D003451 ORTHO05D003918 1.5e-13 79.3 87 59.8
Sp1g38150 Schrenkiella parvula HOM05D003451 ORTHO05D003918 1.5e-13 79.3 87 59.8
BcaB02g11254 Brassica carinata HOM05D003451 ORTHO05D003918 1.9e-13 79.0 88 59.1
AL1G59400 Arabidopsis lyrata HOM05D003451 ORTHO05D003918 2.5e-13 78.6 88 61.4
BcaC08g43919 Brassica carinata HOM05D003451 ORTHO05D003918 2.5e-13 78.6 88 59.1
C06p13130 Brassica napus HOM05D003451 ORTHO05D003918 2.5e-13 78.6 88 59.1
BolC6t36469H Brassica oleracea HOM05D003451 ORTHO05D003918 2.5e-13 78.6 88 59.1
BcaB04g17193 Brassica carinata HOM05D003451 ORTHO05D003918 3.3e-13 78.2 86 60.5
FAN21G2060 Fragaria x ananassa HOM05D003451 ORTHO05D003918 3.3e-13 78.2 73 64.4
ATR0021G055 Amborella trichopoda HOM05D003451 ORTHO05D003918 5.7e-13 77.4 86 53.5
AT1G51510 Arabidopsis thaliana HOM05D003451 ORTHO05D003918 5.7e-13 77.4 88 60.2
TWI60G0042 Tripterygium wilfordii HOM05D003451 ORTHO05D003918 7.4e-13 77.0 87 58.6
BcaC08g43315 Brassica carinata HOM05D003451 ORTHO05D003918 9.6e-13 76.6 87 57.5
A06p02460 Brassica napus HOM05D003451 ORTHO05D003918 9.6e-13 76.6 87 57.5
C06p06630 Brassica napus HOM05D003451 ORTHO05D003918 9.6e-13 76.6 87 57.5
BolC6t35776H Brassica oleracea HOM05D003451 ORTHO05D003918 9.6e-13 76.6 87 57.5
FvH4_3g28440 Fragaria vesca HOM05D003451 ORTHO05D003918 9.6e-13 76.6 73 64.4
FAN11G2798 Fragaria x ananassa HOM05D003451 ORTHO05D003918 9.6e-13 76.6 73 64.4
FAN16G1931 Fragaria x ananassa HOM05D003451 ORTHO05D003918 9.6e-13 76.6 73 64.4
FAN25G3146 Fragaria x ananassa HOM05D003451 ORTHO05D003918 9.6e-13 76.6 73 64.4
BraA06t23452Z Brassica rapa HOM05D003451 ORTHO05D003918 1.3e-12 76.3 87 57.5
Mapoly0141s0030 Marchantia polymorpha HOM05D003451 ORTHO05D003918 1.6e-12 75.9 93 53.8
Ah.04g162060 Amaranthus hybridus HOM05D003451 ORTHO05D003918 2.1e-12 75.5 87 59.8
BcaC01g01279 Brassica carinata HOM05D003451 ORTHO05D003918 2.1e-12 75.5 87 57.5
C03p90160 Brassica napus HOM05D003451 ORTHO05D003918 2.1e-12 75.5 87 57.5
BolC3t21338H Brassica oleracea HOM05D003451 ORTHO05D003918 2.1e-12 75.5 87 57.5
CARHR041670 Cardamine hirsuta HOM05D003451 ORTHO05D003918 4.8e-12 74.3 89 57.3
Carub.0001s4036 Capsella rubella HOM05D003451 ORTHO05D003918 8.2e-12 73.6 90 56.7
QL01p004066 Quercus lobata HOM05D003451 ORTHO05D003918 1.4e-11 72.8 106 50.0
AagrBONN_evm.TU.Sc2ySwM_362.1414 Anthoceros agrestis HOM05D003451 ORTHO05D003918 1.8e-11 72.4 91 53.8
BcaB07g33596 Brassica carinata HOM05D003451 ORTHO05D003918 1.8e-11 72.4 87 55.2
SMO144G0212 Selaginella moellendorffii HOM05D003451 ORTHO05D003918 5.3e-11 70.9 82 51.2
Prupe.4G255000 Prunus persica HOM05D003451 ORTHO05D003918 6.9e-11 70.5 90 51.1
Thhalv10011787m.g Eutrema salsugineum HOM05D003451 ORTHO05D003918 2.6e-10 68.6 89 56.2
Zm00001eb417640 Zea mays HOM05D003451 ORTHO05D003918 7.6e-10 67.0 81 53.1
AagrBONN_evm.TU.Sc2ySwM_344.5320 Anthoceros agrestis HOM05D003451 ORTHO05D003918 2.9e-09 65.1 90 45.6
PSO339G2767 Papaver somniferum HOM05D003451 ORTHO05D003918 2.9e-09 65.1 81 53.1
Zm00001eb354470 Zea mays HOM05D003451 ORTHO05D003918 2.9e-09 65.1 81 51.9
HanXRQChr15g0494941 Helianthus annuus HOM05D003451 ORTHO05D003918 5.0e-09 64.3 52 67.3
TPR.G37988 Trifolium pratense HOM05D003451 ORTHO05D003918 6.5e-09 63.9 69 58.0
PSO384G4628 Papaver somniferum HOM05D003451 ORTHO05D003918 1.4e-08 62.8 81 51.9
Pp3c11_21740 Physcomitrium patens HOM05D003451 ORTHO05D003918 1.9e-08 62.4 95 45.3
Os05g0140500 Oryza sativa ssp. japonica HOM05D003451 ORTHO05D003918 2.5e-08 62.0 93 47.3
SEGI_04454 Sequoiadendron giganteum HOM05D003451 ORTHO05D003918 1.2e-07 59.7 86 50.0
HPP92_000388 Vanilla planifolia HOM05D003451 ORTHO05D003918 1.8e-06 55.8 57 56.1
unitig_27.g25002 Utricularia gibba HOM05D003451 ORTHO05D003918 5.1e-06 54.3 55 52.7


User provided reference genes

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