Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0151200 Rhododendron simsii HOM05D001734 ORTHO05D003483 5.6e-155 550.8 264 100.0
Rhsim06G0125200 Rhododendron simsii HOM05D001734 ORTHO05D003483 5.1e-108 394.8 282 73.0
Rhsim08G0172200 Rhododendron simsii HOM05D001734 ORTHO05D003483 2.2e-87 326.2 247 69.2
vmacro19389 Vaccinium macrocarpon HOM05D001734 ORTHO05D003483 2.6e-83 312.8 247 66.0
CSS0012833 Camellia sinensis var. sinensis HOM05D001734 ORTHO05D003483 2.2e-74 283.1 238 63.0
Dinv20652 Davidia involucrata HOM05D001734 ORTHO05D003483 2.8e-69 266.2 246 57.7
Actinidia19322 Actinidia chinensis HOM05D001734 ORTHO05D003483 2.6e-67 259.6 180 69.4
TAR629G2960 Trochodendron aralioides HOM05D001734 ORTHO05D003483 1.3e-66 257.3 252 55.2
Cfa019134 Carpinus fangiana HOM05D001734 ORTHO05D003483 4.1e-65 252.3 246 54.9
Haze_07473 Corylus avellana HOM05D001734 ORTHO05D003483 7.0e-65 251.5 242 55.8
Sopen03g032020 Solanum pennellii HOM05D001734 ORTHO05D003483 2.3e-63 246.5 246 52.0
CiPaw.11G026100 Carya illinoinensis HOM05D001734 ORTHO05D003483 5.0e-63 245.4 245 52.2
Peaxi162Scf00009g00112 Petunia axillaris HOM05D001734 ORTHO05D003483 8.6e-63 244.6 237 53.6
HanXRQChr02g0036361 Helianthus annuus HOM05D001734 ORTHO05D003483 2.5e-62 243.0 247 51.4
Lj9A448T39 Lonicera japonica HOM05D001734 ORTHO05D003483 2.5e-62 243.0 282 48.9
CAN.G1305.20 Capsicum annuum HOM05D001734 ORTHO05D003483 4.3e-62 242.3 246 53.3
GSVIVG01007755001 Vitis vinifera HOM05D001734 ORTHO05D003483 7.3e-62 241.5 246 52.4
QL10p011601 Quercus lobata HOM05D001734 ORTHO05D003483 4.7e-61 238.8 246 53.3
CANSAT80G1574 Cannabis sativa HOM05D001734 ORTHO05D003483 2.3e-60 236.5 247 53.4
ECA247G1446 Erigeron canadensis HOM05D001734 ORTHO05D003483 4.0e-60 235.7 245 53.1
Cc04_g14140 Coffea canephora HOM05D001734 ORTHO05D003483 8.9e-60 234.6 247 52.2
Lsat_1_v5_gn_1_27061 Lactuca sativa HOM05D001734 ORTHO05D003483 4.4e-59 232.3 246 50.8
Manes.06G105000 Manihot esculenta HOM05D001734 ORTHO05D003483 5.8e-59 231.9 246 50.8
Sed0023277 Sechium edule HOM05D001734 ORTHO05D003483 7.5e-59 231.5 246 49.2
Atru.chr9.2479 Acer truncatum HOM05D001734 ORTHO05D003483 1.7e-58 230.3 247 51.8
Prupe.5G173600 Prunus persica HOM05D001734 ORTHO05D003483 2.2e-58 229.9 246 50.0
TWI14G0283 Tripterygium wilfordii HOM05D001734 ORTHO05D003483 4.9e-58 228.8 242 51.7
Oeu016387.4 Olea europaea HOM05D001734 ORTHO05D003483 8.3e-58 228.0 246 50.4
PSO063G7150 Papaver somniferum HOM05D001734 ORTHO05D003483 2.4e-57 226.5 247 49.0
SalBow5G1563 Salvia bowleyana HOM05D001734 ORTHO05D003483 7.1e-57 224.9 247 49.4
MELO3C017087.2 Cucumis melo HOM05D001734 ORTHO05D003483 9.2e-57 224.6 246 48.8
Potri.015G076650 Populus trichocarpa HOM05D001734 ORTHO05D003483 1.2e-56 224.2 246 50.8
CsaV3_1G001470 Cucumis sativus L. HOM05D001734 ORTHO05D003483 1.6e-56 223.8 246 48.8
Sc04g0001800 Simmondsia chinensis HOM05D001734 ORTHO05D003483 2.1e-56 223.4 246 51.2
Thecc.03G012800 Theobroma cacao HOM05D001734 ORTHO05D003483 1.0e-55 221.1 246 50.8
Nn4g22757 Nelumbo nucifera HOM05D001734 ORTHO05D003483 1.7e-55 220.3 244 51.2
ClCG06G017040 Citrullus lanatus HOM05D001734 ORTHO05D003483 3.0e-55 219.5 246 48.0
Migut.I00009 Erythranthe guttata HOM05D001734 ORTHO05D003483 3.0e-55 219.5 251 47.0
Gohir.A09G171650 Gossypium hirsutum HOM05D001734 ORTHO05D003483 3.0e-55 219.5 240 51.2
Gorai.006G189100 Gossypium raimondii HOM05D001734 ORTHO05D003483 3.0e-55 219.5 240 51.2
PSO063G0326 Papaver somniferum HOM05D001734 ORTHO05D003483 6.6e-55 218.4 247 47.8
PSO732G0258 Papaver somniferum HOM05D001734 ORTHO05D003483 6.6e-55 218.4 247 47.8
arahy.Tifrunner.gnm1.ann1.2D0TBT Arachis hypogaea HOM05D001734 ORTHO05D003483 1.1e-54 217.6 246 48.0
MD06G1173700 Malus domestica HOM05D001734 ORTHO05D003483 1.5e-54 217.2 252 49.6
Gohir.A09G171700 Gossypium hirsutum HOM05D001734 ORTHO05D003483 2.1e-53 213.4 240 50.8
Ciclev10018427m.g Citrus clementina HOM05D001734 ORTHO05D003483 3.6e-53 212.6 246 49.2
SGA_v2.0_scaffold90G27914 Striga asiatica HOM05D001734 ORTHO05D003483 6.2e-53 211.8 250 46.8
Ca_16175_v3 Cicer arietinum L. HOM05D001734 ORTHO05D003483 1.1e-52 211.1 245 48.2
Medtr3g077860 Medicago truncatula HOM05D001734 ORTHO05D003483 2.3e-52 209.9 246 48.8
Lj1g0011912 Lotus japonicus HOM05D001734 ORTHO05D003483 4.0e-52 209.1 246 48.4
MSTRG.11455 Avicennia marina HOM05D001734 ORTHO05D003483 5.2e-52 208.8 245 49.8
Duzib084G0583 Durio zibethinus HOM05D001734 ORTHO05D003483 5.2e-52 208.8 245 50.6
PGR044G0033 Punica granatum HOM05D001734 ORTHO05D003483 5.2e-52 208.8 247 47.8
Migut.C00312 Erythranthe guttata HOM05D001734 ORTHO05D003483 4.4e-51 205.7 227 49.3
Phvul.009G178400 Phaseolus vulgaris HOM05D001734 ORTHO05D003483 2.2e-50 203.4 246 46.7
Cpa.g.sc1166.1 Carica papaya HOM05D001734 ORTHO05D003483 4.9e-50 202.2 246 48.0
Glyma.04G182900 Glycine max HOM05D001734 ORTHO05D003483 1.1e-49 201.1 246 46.7
Lalb_Chr08g0236521 Lupinus albus HOM05D001734 ORTHO05D003483 4.1e-49 199.1 235 48.1
VMungo1309G1926 Vigna mungo HOM05D000002 ORTHO05D000001 5.4e-49 198.7 245 45.7
CARHR156920 Cardamine hirsuta HOM05D001734 ORTHO05D003483 7.1e-49 198.4 245 47.8
Hund02745 Selenicereus undatus HOM05D001734 ORTHO05D003483 2.1e-48 196.8 237 48.1
AL5G27530 Arabidopsis lyrata HOM05D001734 ORTHO05D003483 2.7e-48 196.4 246 47.6
Eucgr.K02842 Eucalyptus grandis HOM05D001734 ORTHO05D003483 2.7e-48 196.4 244 44.7
FvH4_2g11670 Fragaria vesca HOM05D001734 ORTHO05D003483 3.5e-48 196.1 243 45.7
FAN24G1896 Fragaria x ananassa HOM05D001734 ORTHO05D003483 3.5e-48 196.1 243 45.7
AT3G48190 Arabidopsis thaliana HOM05D001734 ORTHO05D003483 4.6e-48 195.7 246 47.2
FAN15G3378 Fragaria x ananassa HOM05D001734 ORTHO05D003483 1.3e-47 194.1 243 45.3
FAN05G0227 Fragaria x ananassa HOM05D001734 ORTHO05D003483 1.7e-47 193.7 243 45.3
RcHm_v2.0_Chr6g0271131 Rosa chinensis HOM05D001734 ORTHO05D003483 3.9e-47 192.6 244 45.1
DCAR_026136 Daucus carota HOM05D001734 ORTHO05D003483 1.1e-46 191.0 240 47.9
Carub.0005s1431 Capsella rubella HOM05D001734 ORTHO05D003483 1.5e-46 190.7 245 46.1
Aa31LG4G16790 Aethionema arabicum HOM05D001734 ORTHO05D003483 3.6e-45 186.0 246 44.7
TPR.G6095 Trifolium pratense HOM05D001734 ORTHO05D003483 8.1e-45 184.9 246 45.1
THA.LOC104818218 Tarenaya hassleriana HOM05D001734 ORTHO05D003483 1.1e-44 184.5 245 45.7
Os01g0106700 Oryza sativa ssp. japonica HOM05D001734 ORTHO05D003483 1.8e-44 183.7 249 42.6
A06p27460 Brassica napus HOM05D001734 ORTHO05D003483 5.2e-44 182.2 247 43.7
BraA06t25686Z Brassica rapa HOM05D001734 ORTHO05D003483 5.2e-44 182.2 247 43.7
Thhalv10010050m.g Eutrema salsugineum HOM05D001734 ORTHO05D003483 5.2e-44 182.2 246 43.9
C03p66700 Brassica napus HOM05D001734 ORTHO05D003483 6.8e-44 181.8 247 44.1
Aqoxy3G02937 Aquilegia oxysepala HOM05D001734 ORTHO05D003483 1.5e-43 180.6 247 42.1
BolC3t18938H Brassica oleracea HOM05D001734 ORTHO05D003483 1.5e-43 180.6 247 43.7
EL10Ac5g10743 Beta vulgaris HOM05D001734 ORTHO05D003483 1.3e-42 177.6 253 43.5
HPP92_004845 Vanilla planifolia HOM05D002152 ORTHO05D003483 3.5e-40 169.5 246 41.1
Zm00001eb126710 Zea mays HOM05D001734 ORTHO05D003483 3.9e-39 166.0 242 39.3
Rhsim08G0157900 Rhododendron simsii HOM05D001734 ORTHO05D003483 4.3e-38 162.5 145 63.4
Nitab4.5_0000984g0080 Nicotiana tabacum HOM05D001734 ORTHO05D003483 2.8e-37 159.8 195 44.6
SHI17017 Sapria himalayana HOM05D001734 ORTHO05D003483 1.4e-36 157.5 182 51.1
ATR0730G017 Amborella trichopoda HOM05D001734 ORTHO05D003483 2.5e-30 136.7 253 35.2
BcaNung06699 Brassica carinata HOM05D001734 ORTHO05D003483 8.1e-29 131.7 122 54.9
CDE07G0247 Ceratophyllum demersum HOM05D001734 ORTHO05D003483 3.1e-28 129.8 192 42.7
SEGI_17988 Sequoiadendron giganteum HOM05D001734 ORTHO05D003483 3.1e-28 129.8 172 43.0
COL.COLO4_30039 Corchorus olitorius HOM05D001734 ORTHO05D003483 6.9e-28 128.6 246 38.2
Mapoly0081s0051 Marchantia polymorpha HOM05D001734 ORTHO05D003483 8.4e-26 121.7 247 32.0
arahy.Tifrunner.gnm1.ann1.BK2P93 Arachis hypogaea HOM05D001734 ORTHO05D003483 7.1e-25 118.6 178 40.4
arahy.Tifrunner.gnm1.ann1.1I6Y5K Arachis hypogaea HOM05D001734 ORTHO05D003483 7.9e-24 115.2 106 52.8
Pp3c2_23700 Physcomitrium patens HOM05D001734 ORTHO05D003483 1.8e-23 114.0 255 32.2
AagrBONN_evm.TU.Sc2ySwM_117.1596 Anthoceros agrestis HOM05D001734 ORTHO05D003483 3.1e-20 103.2 253 30.8
CBR_g286 Chara braunii HOM05D000004 ORTHO05D000002 7.1e-17 92.0 142 38.7
TPR.G21158 Trifolium pratense HOM05D001734 ORTHO05D003483 3.5e-16 89.7 73 56.2
arahy.Tifrunner.gnm1.ann1.EMU6Q2 Arachis hypogaea HOM05D001734 ORTHO05D003483 7.9e-16 88.6 106 43.4


User provided reference genes

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