Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0061900 Rhododendron simsii HOM05D005045 ORTHO05D006386 0.0e+00 2617.8 1392 100.0
CiPaw.01G116800 Carya illinoinensis HOM05D005045 ORTHO05D006386 0.0e+00 1815.0 1401 70.6
Cfa014961 Carpinus fangiana HOM05D005045 ORTHO05D006386 0.0e+00 1798.5 1387 71.2
Actinidia28996 Actinidia chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1787.3 1406 71.1
TWI53G1845 Tripterygium wilfordii HOM05D005045 ORTHO05D006386 0.0e+00 1771.5 1401 69.5
Cpa.g.sc157.48 Carica papaya HOM05D005045 ORTHO05D006386 0.0e+00 1768.1 1401 69.5
Dinv38168 Davidia involucrata HOM05D005045 ORTHO05D006386 0.0e+00 1726.1 1401 68.8
Potri.001G320300 Populus trichocarpa HOM05D005045 ORTHO05D006386 0.0e+00 1719.1 1401 67.2
vmacro15566 Vaccinium macrocarpon HOM05D005045 ORTHO05D006386 0.0e+00 1701.4 1433 69.2
Sed0026716 Sechium edule HOM05D005045 ORTHO05D006386 0.0e+00 1695.2 1401 66.0
Ciclev10004166m.g Citrus clementina HOM05D005045 ORTHO05D006386 0.0e+00 1687.5 1401 66.7
PGR142G0016 Punica granatum HOM05D005045 ORTHO05D006386 0.0e+00 1679.5 1401 65.9
MELO3C006292.2 Cucumis melo HOM05D005045 ORTHO05D006386 0.0e+00 1676.4 1401 65.8
Eucgr.H00025 Eucalyptus grandis HOM05D005045 ORTHO05D006386 0.0e+00 1659.4 1364 66.9
CSS0020032 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 0.0e+00 1654.4 1401 66.8
Phvul.001G266800 Phaseolus vulgaris HOM05D005045 ORTHO05D006386 0.0e+00 1654.0 1401 64.8
CsaV3_3G010730 Cucumis sativus L. HOM05D005045 ORTHO05D006386 0.0e+00 1647.9 1401 65.1
Glyma.18G002400 Glycine max HOM05D005045 ORTHO05D006386 0.0e+00 1646.3 1401 64.7
Sc19g0007360 Simmondsia chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1632.8 1364 66.3
Lalb_Chr11g0075871 Lupinus albus HOM05D005045 ORTHO05D006386 0.0e+00 1627.8 1401 64.3
Lj6g0005100 Lotus japonicus HOM05D005045 ORTHO05D006386 0.0e+00 1619.8 1401 63.9
Haze_11653 Corylus avellana HOM05D005045 ORTHO05D006386 0.0e+00 1609.3 1633 58.5
Manes.03G144200 Manihot esculenta HOM05D005045 ORTHO05D006386 0.0e+00 1607.0 1401 64.1
Sabra16G0202900 Salix brachista HOM05D005045 ORTHO05D006386 0.0e+00 1604.7 1498 60.9
Prupe.1G165000 Prunus persica HOM05D005045 ORTHO05D006386 0.0e+00 1600.9 1401 63.2
ClCG05G003110 Citrullus lanatus HOM05D005045 ORTHO05D006386 0.0e+00 1600.5 1449 62.4
FvH4_4g13300 Fragaria vesca HOM05D005045 ORTHO05D006386 0.0e+00 1597.0 1401 63.0
Thhalv10016151m.g Eutrema salsugineum HOM05D005045 ORTHO05D006386 0.0e+00 1593.6 1401 62.3
THA.LOC104826172 Tarenaya hassleriana HOM05D005045 ORTHO05D006386 0.0e+00 1590.9 1401 63.0
Carub.0004s1329 Capsella rubella HOM05D005045 ORTHO05D006386 0.0e+00 1590.5 1401 62.4
RcHm_v2.0_Chr4g0413591 Rosa chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1582.0 1401 62.5
MD05G1230300 Malus domestica HOM05D005045 ORTHO05D006386 0.0e+00 1572.8 1401 62.0
Cc03_g08470 Coffea canephora HOM05D005045 ORTHO05D006386 0.0e+00 1567.7 1402 62.1
CAN.G765.38 Capsicum annuum HOM05D005045 ORTHO05D006386 0.0e+00 1559.7 1401 62.9
Migut.G00767 Erythranthe guttata HOM05D005045 ORTHO05D006386 0.0e+00 1549.3 1401 61.0
Sp4g14350 Schrenkiella parvula HOM05D005045 ORTHO05D006386 0.0e+00 1544.3 1401 61.7
AL4G27320 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 0.0e+00 1540.0 1401 61.2
Sopen05g032270 Solanum pennellii HOM05D005045 ORTHO05D006386 0.0e+00 1536.2 1401 62.0
Nn3g20083 Nelumbo nucifera HOM05D005045 ORTHO05D006386 0.0e+00 1535.4 1409 61.3
Aa31LG5G5040 Aethionema arabicum HOM05D005045 ORTHO05D006386 0.0e+00 1532.7 1401 61.8
AT2G31970 Arabidopsis thaliana HOM05D005045 ORTHO05D006386 0.0e+00 1527.3 1401 60.8
PSO017G0058 Papaver somniferum HOM05D005045 ORTHO05D006386 0.0e+00 1527.3 1401 61.1
Thecc.04G195000 Theobroma cacao HOM05D005045 ORTHO05D006386 0.0e+00 1523.1 1401 61.4
Peaxi162Scf00423g00410 Petunia axillaris HOM05D005045 ORTHO05D006386 0.0e+00 1519.2 1401 60.6
VMungo1383G3533 Vigna mungo HOM05D005045 ORTHO05D006386 0.0e+00 1518.8 1387 61.7
Aqoxy2G03932 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 0.0e+00 1509.2 1401 60.6
Solyc05g053800.3 Solanum lycopersicum HOM05D005045 ORTHO05D006386 0.0e+00 1508.4 1401 61.2
HPP92_024209 Vanilla planifolia HOM05D005045 ORTHO05D006386 0.0e+00 1507.7 1401 59.7
FAN22G0494 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1502.6 1454 59.4
FAN12G2321 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1500.7 1402 60.4
Psat5g100040 Pisum sativum HOM05D005045 ORTHO05D006386 0.0e+00 1499.6 1401 60.5
MSTRG.9796 Avicennia marina HOM05D005045 ORTHO05D006386 0.0e+00 1497.3 1401 59.4
Atru.chr4.1578 Acer truncatum HOM05D005045 ORTHO05D006386 0.0e+00 1482.2 1401 61.7
BcaB01g04004 Brassica carinata HOM05D005045 ORTHO05D006386 0.0e+00 1482.2 1401 59.7
Duzib151G0179 Durio zibethinus HOM05D005045 ORTHO05D006386 0.0e+00 1472.2 1401 59.5
A03p17990 Brassica napus HOM05D005045 ORTHO05D006386 0.0e+00 1465.7 1424 58.8
Medtr3g084300 Medicago truncatula HOM05D005045 ORTHO05D006386 0.0e+00 1464.9 1396 59.9
CDE02G0777 Ceratophyllum demersum HOM05D005045 ORTHO05D006386 0.0e+00 1461.8 1401 59.6
BolC3t14484H Brassica oleracea HOM05D005045 ORTHO05D006386 0.0e+00 1459.5 1416 59.0
C03p21030 Brassica napus HOM05D005045 ORTHO05D006386 0.0e+00 1457.6 1416 58.9
Nitab4.5_0002260g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 0.0e+00 1457.6 1345 61.5
BraA03t11060Z Brassica rapa HOM05D005045 ORTHO05D006386 0.0e+00 1456.8 1443 58.0
EL10Ac3g07454 Beta vulgaris HOM05D005045 ORTHO05D006386 0.0e+00 1429.1 1401 57.8
FAN07G1455 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1417.9 1325 60.3
TPR.G25379 Trifolium pratense HOM05D005045 ORTHO05D006386 0.0e+00 1417.5 1401 57.7
ATR0561G148 Amborella trichopoda HOM05D005045 ORTHO05D006386 0.0e+00 1417.1 1387 57.7
Lsat_1_v5_gn_6_59140 Lactuca sativa HOM05D005045 ORTHO05D006386 0.0e+00 1398.6 1401 56.2
SGA_v2.0_scaffold27G11679 Striga asiatica HOM05D005045 ORTHO05D006386 0.0e+00 1395.9 1401 56.3
Gohir.A02G019100 Gossypium hirsutum HOM05D005045 ORTHO05D006386 0.0e+00 1392.5 1402 57.7
Gohir.D02G022400 Gossypium hirsutum HOM05D005045 ORTHO05D006386 0.0e+00 1391.7 1402 57.8
Gorai.005G027800 Gossypium raimondii HOM05D005045 ORTHO05D006386 0.0e+00 1391.3 1402 57.8
HanXRQChr02g0058481 Helianthus annuus HOM05D005045 ORTHO05D006386 0.0e+00 1381.7 1401 56.2
SalBow8G0828 Salvia bowleyana HOM05D005045 ORTHO05D006386 0.0e+00 1372.5 1387 55.9
DCAR_005488 Daucus carota HOM05D005045 ORTHO05D006386 0.0e+00 1351.7 1374 56.4
ECA233G4939 Erigeron canadensis HOM05D005045 ORTHO05D006386 0.0e+00 1344.3 1401 55.2
Mapoly0027s0186 Marchantia polymorpha HOM05D005045 ORTHO05D006386 1.4e-308 1063.5 1401 45.8
Oeu034322.3 Olea europaea HOM05D005045 ORTHO05D006386 2.9e-303 1045.8 1045 57.6
Nitab4.5_0003358g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 1.8e-297 1026.5 1178 52.2
unitig_0.g1961 Utricularia gibba HOM05D005045 ORTHO05D006386 6.1e-285 984.9 1200 48.8
CARHR125720 Cardamine hirsuta HOM05D005045 ORTHO05D006386 4.6e-280 968.8 897 59.8
Pp3c10_3760 Physcomitrium patens HOM05D005045 ORTHO05D006386 9.5e-278 961.1 1402 42.7
MBI07_g27365_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 1.4e-273 947.2 913 59.1
AagrBONN_evm.TU.Sc2ySwM_368.995 Anthoceros agrestis HOM05D002013 ORTHO05D002293 1.2e-269 934.1 1408 41.7
Zm00001eb181120 Zea mays HOM05D005045 ORTHO05D006386 1.4e-265 920.6 1146 47.3
AUR62020863 Chenopodium quinoa HOM05D005045 ORTHO05D006386 2.8e-261 906.4 1042 50.4
SMO217G0009 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 5.2e-260 902.1 1398 41.9
Ah.04g149410 Amaranthus hybridus HOM05D005045 ORTHO05D006386 5.4e-257 892.1 1253 44.9
BcaNung07126 Brassica carinata HOM05D005045 ORTHO05D006386 6.6e-247 858.6 921 54.0
SMO356G0717 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 4.8e-245 852.4 1387 41.1
Lju912A1G33 Lonicera japonica HOM05D005045 ORTHO05D006386 4.9e-234 815.8 883 53.2
BcaC01g05925 Brassica carinata HOM05D005045 ORTHO05D006386 6.7e-223 778.9 928 51.2
TAR362G1154 Trochodendron aralioides HOM05D005045 ORTHO05D006386 4.3e-222 776.2 599 72.0
Os02g0497500 Oryza sativa ssp. japonica HOM05D005045 ORTHO05D006386 2.0e-219 767.3 878 49.4
SEGI_03959 Sequoiadendron giganteum HOM05D005045 ORTHO05D006386 7.2e-217 758.8 691 58.8
Ca_16407_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 8.2e-213 745.3 748 57.0
Ca_16416_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 8.2e-213 745.3 748 57.0
arahy.Tifrunner.gnm1.ann1.2Y4S4L Arachis hypogaea HOM05D005045 ORTHO05D006386 2.5e-209 733.8 561 70.1
arahy.Tifrunner.gnm1.ann1.RK3EBX Arachis hypogaea HOM05D005045 ORTHO05D006386 2.5e-209 733.8 561 69.9
MBI07_g27366_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 8.8e-183 645.6 475 72.0
Ca_16406_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 2.8e-181 640.6 561 63.5
CBR_g44539 Chara braunii HOM05D005045 ORTHO05D006386 2.4e-180 637.5 1293 34.5
Lj6C381G5 Lonicera japonica HOM05D005045 ORTHO05D006386 2.0e-174 617.8 523 65.4
SHI26063 Sapria himalayana HOM05D005045 ORTHO05D006386 2.2e-157 561.2 665 51.4
CSS0025820 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 1.9e-156 558.1 351 81.8
Aqoxy430s001 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 4.6e-155 553.5 513 60.4
AUR62018556 Chenopodium quinoa HOM05D005045 ORTHO05D006386 2.5e-145 521.2 401 68.3
Lju912C0T2 Lonicera japonica HOM05D005045 ORTHO05D006386 3.6e-136 490.7 457 60.6
FAN17G1875 Fragaria x ananassa HOM05D005045 ORTHO05D006386 9.0e-135 486.1 296 83.4
AUR62020862 Chenopodium quinoa HOM05D005045 ORTHO05D006386 3.2e-124 451.1 346 70.5
MCO01G132 Micromonas commoda HOM05D005045 ORTHO05D006386 6.0e-123 446.8 1412 29.3
COL.COLO4_20233 Corchorus olitorius HOM05D005045 ORTHO05D006386 5.6e-121 440.3 244 91.4
QL06p025788 Quercus lobata HOM05D005045 ORTHO05D006386 1.6e-115 422.2 264 82.6
arahy.Tifrunner.gnm1.ann1.KK4CMR Arachis hypogaea HOM05D005045 ORTHO05D006386 5.3e-103 380.6 374 60.2
BcaNung07125 Brassica carinata HOM05D005045 ORTHO05D006386 4.5e-102 377.5 318 65.1
PRCOL_00000463 Prasinoderma coloniale HOM05D005045 ORTHO05D006386 3.0e-98 364.8 1434 27.3
Ca_16415_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 3.4e-94 351.3 437 49.4
AL80U10080 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 5.9e-94 350.5 187 93.6
Cre03.g192550 Chlamydomonas reinhardtii HOM05D005045 ORTHO05D006386 5.1e-90 337.4 1461 26.3
BcaB01g04007 Brassica carinata HOM05D005045 ORTHO05D006386 9.1e-87 326.6 519 42.0
Ca_16414_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 2.9e-77 295.0 152 97.4
Cfa022909 Carpinus fangiana HOM05D005045 ORTHO05D006386 1.9e-76 292.4 1420 23.9
Lj6A381G13 Lonicera japonica HOM05D005045 ORTHO05D006386 1.8e-71 275.8 355 47.6
unitig_0.g1960 Utricularia gibba HOM05D005045 ORTHO05D006386 1.0e-69 270.0 154 88.3
COL.COLO4_20231 Corchorus olitorius HOM05D005045 ORTHO05D006386 4.9e-56 224.6 897 27.5
Nitab4.5_0003358g0090 Nicotiana tabacum HOM05D005045 ORTHO05D006386 1.0e-53 216.9 140 82.1
Actinidia11455 Actinidia chinensis HOM05D005045 ORTHO05D006386 1.8e-50 206.1 139 80.6
Ah.04g149400 Amaranthus hybridus HOM05D005045 ORTHO05D006386 3.4e-49 201.8 153 72.5
Lj6A381G12 Lonicera japonica HOM05D005045 ORTHO05D006386 2.9e-48 198.7 169 60.4
SHI26076 Sapria himalayana HOM05D005045 ORTHO05D006386 1.0e-37 163.7 87 94.3
SHI26072 Sapria himalayana HOM05D005045 ORTHO05D006386 7.3e-36 157.5 191 48.7
Actinidia11457 Actinidia chinensis HOM05D005045 ORTHO05D006386 2.8e-35 155.6 106 78.3
SHI26067 Sapria himalayana HOM05D005045 ORTHO05D006386 5.2e-34 151.4 118 66.9
BcaB01g04008 Brassica carinata HOM05D005045 ORTHO05D006386 5.6e-28 131.3 226 40.3
SHI26068 Sapria himalayana HOM05D005045 ORTHO05D000014 1.8e-26 126.3 138 50.0
Nitab4.5_0003358g0100 Nicotiana tabacum HOM05D005045 ORTHO05D006386 6.0e-22 111.3 56 98.2
Lsat_1_v5_gn_2_13081 Lactuca sativa HOM05D005045 ORTHO05D006386 5.1e-21 108.2 64 84.4
Lsat_1_v5_gn_5_127521 Lactuca sativa HOM05D005045 ORTHO05D006386 7.3e-20 104.4 106 58.5
Lsat_1_v5_gn_3_72140 Lactuca sativa HOM05D005045 ORTHO05D006386 1.6e-19 103.2 64 78.1
QL10p041126 Quercus lobata HOM05D005045 ORTHO05D006386 1.2e-17 97.1 90 61.1
VMungo0331G0368 Vigna mungo HOM05D005045 ORTHO05D006386 1.2e-17 97.1 71 73.2
Prupe.1G180400 Prunus persica HOM05D005045 ORTHO05D006386 3.8e-16 92.0 106 51.9
VMungo0251G0925 Vigna mungo HOM05D005045 ORTHO05D005612 6.4e-16 91.3 70 70.0
Lsat_1_v5_gn_6_56800 Lactuca sativa HOM05D000112 ORTHO05D001918 1.9e-12 79.7 53 71.7
ECA233G3942 Erigeron canadensis HOM05D005045 ORTHO05D006386 9.0e-10 70.9 161 31.1
Lsat_1_v5_gn_8_35100 Lactuca sativa HOM05D000324 ORTHO05D010724 9.0e-10 70.9 63 65.1
BcaC05g28670 Brassica carinata HOM05D005045 ORTHO05D006386 1.2e-09 70.5 77 51.9
Lsat_1_v5_gn_4_149801 Lactuca sativa HOM05D000324 ORTHO05D010724 2.2e-08 66.2 61 65.6
Lsat_1_v5_gn_9_35481 Lactuca sativa HOM05D000324 ORTHO05D010724 3.8e-08 65.5 56 69.6
MBI07_g45033_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 3.2e-07 62.4 30 100.0


User provided reference genes

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