Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0237391 Rosa chinensis HOM05D004229 ORTHO05D005468 1.2e-43 179.5 91 100.0
FAN13G1026 Fragaria x ananassa HOM05D004229 ORTHO05D005468 4.2e-25 117.9 72 80.6
FAN04G2411 Fragaria x ananassa HOM05D004229 ORTHO05D005468 5.5e-25 117.5 72 80.6
FAN18G2159 Fragaria x ananassa HOM05D004229 ORTHO05D005468 7.1e-25 117.1 72 80.6
FvH4_5g35750 Fragaria vesca HOM05D004229 ORTHO05D005468 4.6e-24 114.4 72 79.2
Thecc.10G082900 Theobroma cacao HOM05D004229 ORTHO05D005468 3.3e-22 108.2 72 73.6
Gohir.A05G411400 Gossypium hirsutum HOM05D004229 ORTHO05D005468 4.3e-22 107.8 63 82.5
Gohir.D04G004600 Gossypium hirsutum HOM05D004229 ORTHO05D005468 4.3e-22 107.8 63 82.5
Gorai.012G005800 Gossypium raimondii HOM05D004229 ORTHO05D005468 4.3e-22 107.8 63 82.5
Haze_16858 Corylus avellana HOM05D004229 ORTHO05D005468 9.7e-22 106.7 72 73.6
Sabra08G0023800 Salix brachista HOM05D004229 ORTHO05D005468 9.7e-22 106.7 72 72.2
CiPaw.01G268900 Carya illinoinensis HOM05D004229 ORTHO05D005468 2.2e-21 105.5 72 73.6
Actinidia38868 Actinidia chinensis HOM05D004229 ORTHO05D005468 2.8e-21 105.1 72 70.8
Actinidia34806 Actinidia chinensis HOM05D004229 ORTHO05D005468 3.7e-21 104.8 72 69.4
Duzib114G0264 Durio zibethinus HOM05D004229 ORTHO05D005468 3.7e-21 104.8 72 72.2
Potri.010G226600 Populus trichocarpa HOM05D004229 ORTHO05D005468 3.7e-21 104.8 63 77.8
PGR142G2592 Punica granatum HOM05D004229 ORTHO05D005468 3.7e-21 104.8 72 70.8
vmacro07123 Vaccinium macrocarpon HOM05D004229 ORTHO05D005468 3.7e-21 104.8 72 69.4
EL10Ac7g16698 Beta vulgaris HOM05D004229 ORTHO05D005468 4.8e-21 104.4 72 70.8
Eucgr.G02865 Eucalyptus grandis HOM05D004229 ORTHO05D005468 4.8e-21 104.4 72 70.8
Nn2g13792 Nelumbo nucifera HOM05D004229 ORTHO05D003832 4.8e-21 104.4 72 70.8
MSTRG.27482 Avicennia marina HOM05D004229 ORTHO05D005468 6.3e-21 104.0 72 70.8
Cfa001676 Carpinus fangiana HOM05D004229 ORTHO05D005468 6.3e-21 104.0 72 70.8
Dinv31228 Davidia involucrata HOM05D004229 ORTHO05D005468 6.3e-21 104.0 72 69.4
FvH4_7g18830 Fragaria vesca HOM05D004229 ORTHO05D005468 6.3e-21 104.0 72 73.6
FAN03G3391 Fragaria x ananassa HOM05D004229 ORTHO05D005468 6.3e-21 104.0 72 73.6
FAN06G0013 Fragaria x ananassa HOM05D004229 ORTHO05D005468 6.3e-21 104.0 72 73.6
FAN06G0297 Fragaria x ananassa HOM05D004229 ORTHO05D005468 6.3e-21 104.0 72 73.6
FAN10G0146 Fragaria x ananassa HOM05D004229 ORTHO05D005468 6.3e-21 104.0 72 73.6
CSS0012456 Camellia sinensis var. sinensis HOM05D004229 ORTHO05D005468 8.2e-21 103.6 72 69.4
Cc02_g10960 Coffea canephora HOM05D004229 ORTHO05D005468 8.2e-21 103.6 78 65.4
COL.COLO4_17138 Corchorus olitorius HOM05D004229 ORTHO05D005468 8.2e-21 103.6 72 72.2
Prupe.2G209100 Prunus persica HOM05D004229 ORTHO05D005468 1.1e-20 103.2 72 69.4
Atru.chr12.837 Acer truncatum HOM05D004229 ORTHO05D005468 1.4e-20 102.8 64 79.7
Ciclev10031072m.g Citrus clementina HOM05D004229 ORTHO05D005468 1.4e-20 102.8 73 71.2
Oeu000792.2 Olea europaea HOM05D004229 ORTHO05D005468 1.4e-20 102.8 72 69.4
SGA_v2.0_scaffold62G21390 Striga asiatica HOM05D004229 ORTHO05D005468 1.4e-20 102.8 72 70.8
TAR633G0060 Trochodendron aralioides HOM05D004229 ORTHO05D005468 1.4e-20 102.8 72 66.7
Aqoxy4G03296 Aquilegia oxysepala HOM05D004229 ORTHO05D005468 1.8e-20 102.4 72 69.4
AL5G35970 Arabidopsis lyrata HOM05D004229 ORTHO05D005468 1.8e-20 102.4 72 70.8
CARHR164840 Cardamine hirsuta HOM05D004229 ORTHO05D005468 1.8e-20 102.4 72 69.4
CDE09G0908 Ceratophyllum demersum HOM05D004229 ORTHO05D005468 1.8e-20 102.4 63 76.2
Nitab4.5_0000096g0310 Nicotiana tabacum HOM05D004229 ORTHO05D005468 1.8e-20 102.4 72 69.4
Nitab4.5_0001760g0040 Nicotiana tabacum HOM05D004229 ORTHO05D005468 1.8e-20 102.4 72 69.4
RcHm_v2.0_Chr1g0362641 Rosa chinensis HOM05D004229 ORTHO05D005468 1.8e-20 102.4 72 72.2
Solyc05g055600.4 Solanum lycopersicum HOM05D004229 ORTHO05D005468 1.8e-20 102.4 72 69.4
Sopen05g034050 Solanum pennellii HOM05D004229 ORTHO05D005468 1.8e-20 102.4 72 69.4
GSVIVG01016224001 Vitis vinifera HOM05D004229 ORTHO05D005468 1.8e-20 102.4 73 69.9
Rhsim03G0230200 Rhododendron simsii HOM05D004229 ORTHO05D005468 2.4e-20 102.1 72 66.7
Glyma.10G208100 Glycine max HOM05D004229 ORTHO05D005468 3.1e-20 101.7 72 69.4
Lj2C19G5 Lonicera japonica HOM05D004229 ORTHO05D005468 3.1e-20 101.7 72 69.4
Manes.15G095600 Manihot esculenta HOM05D004229 ORTHO05D005468 3.1e-20 101.7 73 71.2
Medtr1g094200 Medicago truncatula HOM05D004229 ORTHO05D005468 3.1e-20 101.7 72 68.1
VMungo1080G0141 Vigna mungo HOM05D004229 ORTHO05D005468 3.1e-20 101.7 72 69.4
Carub.0005s2147 Capsella rubella HOM05D004229 ORTHO05D005468 4.1e-20 101.3 72 69.4
Ca_10545_v3 Cicer arietinum L. HOM05D004229 ORTHO05D005468 4.1e-20 101.3 72 68.1
Phvul.005G180400 Phaseolus vulgaris HOM05D004229 ORTHO05D005468 4.1e-20 101.3 72 69.4
BcaB01g00152 Brassica carinata HOM05D004229 ORTHO05D005468 6.9e-20 100.5 72 69.4
BcaC07g39772 Brassica carinata HOM05D004229 ORTHO05D005468 6.9e-20 100.5 72 69.4
BcaNung06953 Brassica carinata HOM05D004229 ORTHO05D005468 6.9e-20 100.5 72 69.4
A09p47800 Brassica napus HOM05D004229 ORTHO05D005468 6.9e-20 100.5 72 69.4
C08p30050 Brassica napus HOM05D004229 ORTHO05D005468 6.9e-20 100.5 72 69.4
BolC8t50614H Brassica oleracea HOM05D004229 ORTHO05D005468 6.9e-20 100.5 72 69.4
ClCG05G021220 Citrullus lanatus HOM05D004229 ORTHO05D005468 6.9e-20 100.5 72 68.1
Sp5g07560 Schrenkiella parvula HOM05D004229 ORTHO05D005468 6.9e-20 100.5 72 69.4
TWI38G0761 Tripterygium wilfordii HOM05D004229 ORTHO05D005468 6.9e-20 100.5 63 76.2
AT3G54860 Arabidopsis thaliana HOM05D004229 ORTHO05D005468 9.0e-20 100.1 72 69.4
MELO3C012405.2 Cucumis melo HOM05D004229 ORTHO05D005468 9.0e-20 100.1 72 66.7
CsaV3_5G036050 Cucumis sativus L. HOM05D004229 ORTHO05D005468 9.0e-20 100.1 72 66.7
Migut.F01959 Erythranthe guttata HOM05D004229 ORTHO05D005468 9.0e-20 100.1 72 69.4
Hund24846 Selenicereus undatus HOM05D004229 ORTHO05D005468 9.0e-20 100.1 72 68.1
Sabra10G0174900 Salix brachista HOM05D004229 ORTHO05D005468 1.2e-19 99.8 80 65.0
CAN.G694.36 Capsicum annuum HOM05D004229 ORTHO05D005468 1.5e-19 99.4 72 66.7
Lj5g0013282 Lotus japonicus HOM05D004229 ORTHO05D005468 1.5e-19 99.4 72 68.1
Lalb_Chr21g0313711 Lupinus albus HOM05D004229 ORTHO05D005468 1.5e-19 99.4 72 66.7
Sc20g0001740 Simmondsia chinensis HOM05D004229 ORTHO05D005468 1.5e-19 99.4 72 66.7
ATR1132G004 Amborella trichopoda HOM05D004229 ORTHO05D005468 2.0e-19 99.0 72 66.7
Psat6g180120 Pisum sativum HOM05D004229 ORTHO05D005468 2.0e-19 99.0 72 66.7
THA.LOC104826473 Tarenaya hassleriana HOM05D004229 ORTHO05D005468 2.0e-19 99.0 72 69.4
Aa31sc141G10 Aethionema arabicum HOM05D004229 ORTHO05D005468 2.6e-19 98.6 75 65.3
MD01G1103400 Malus domestica HOM05D004229 ORTHO05D005468 2.6e-19 98.6 73 68.5
Zm00001eb356850 Zea mays HOM05D004229 ORTHO05D005468 2.6e-19 98.6 72 66.7
CANSAT56G0520 Cannabis sativa HOM05D004229 ORTHO05D005468 3.4e-19 98.2 72 66.7
Thhalv10010229m.g Eutrema salsugineum HOM05D004229 ORTHO05D005468 3.4e-19 98.2 63 74.6
FAN10G1099 Fragaria x ananassa HOM05D004229 ORTHO05D005468 3.4e-19 98.2 61 78.7
Potri.008G035600 Populus trichocarpa HOM05D004229 ORTHO05D005468 3.4e-19 98.2 72 68.1
Os04g0223000 Oryza sativa ssp. japonica HOM05D004229 ORTHO05D005468 4.5e-19 97.8 72 65.3
PGSC0003DMG400023478 Solanum tuberosum HOM05D004229 ORTHO05D005468 4.5e-19 97.8 61 75.4
Lsat_1_v5_gn_9_70141 Lactuca sativa HOM05D004229 ORTHO05D005468 7.6e-19 97.1 73 65.8
Sed0026489 Sechium edule HOM05D004229 ORTHO05D005468 7.6e-19 97.1 72 65.3
QL08p054613 Quercus lobata HOM05D004229 ORTHO05D005468 1.3e-18 96.3 72 66.7
Pp3c17_5740 Physcomitrium patens HOM05D004229 ORTHO05D005468 1.7e-18 95.9 83 57.8
Peaxi162Scf00176g01415 Petunia axillaris HOM05D004229 ORTHO05D005468 2.2e-18 95.5 80 62.5
HanXRQChr09g0248221 Helianthus annuus HOM05D004229 ORTHO05D005468 2.9e-18 95.1 73 64.4
SalBow4G2353 Salvia bowleyana HOM05D004229 ORTHO05D005468 2.9e-18 95.1 72 66.7
SalBow4G2572 Salvia bowleyana HOM05D004229 ORTHO05D005468 2.9e-18 95.1 72 66.7
HanXRQChr12g0376891 Helianthus annuus HOM05D004229 ORTHO05D005468 3.8e-18 94.7 73 64.4
QL08p054435 Quercus lobata HOM05D004229 ORTHO05D005468 3.8e-18 94.7 72 65.3
PSO339G0163 Papaver somniferum HOM05D004229 ORTHO05D005468 6.5e-18 94.0 73 67.1
PSO801G0085 Papaver somniferum HOM05D004229 ORTHO05D005468 6.5e-18 94.0 73 67.1
PSO170G6718 Papaver somniferum HOM05D004229 ORTHO05D005468 1.4e-17 92.8 73 67.1
SHI08894 Sapria himalayana HOM05D004229 ORTHO05D005468 2.5e-17 92.0 63 65.1
AUR62036467 Chenopodium quinoa HOM05D004229 ORTHO05D005468 7.2e-17 90.5 61 73.8
ECA232G1554 Erigeron canadensis HOM05D004229 ORTHO05D005468 7.2e-17 90.5 73 64.4
MBI09_g03016_MAGBIO Magnolia biondii HOM05D004229 ORTHO05D005468 9.3e-17 90.1 58 70.7
Mapoly0054s0015 Marchantia polymorpha HOM05D004229 ORTHO05D005468 9.3e-17 90.1 73 61.6
unitig_899.g14450 Utricularia gibba HOM05D004229 ORTHO05D005468 1.2e-16 89.7 77 57.1
QL08p054558 Quercus lobata HOM05D004229 ORTHO05D005468 2.1e-16 89.0 61 68.9
BraA09t40237Z Brassica rapa HOM05D004229 ORTHO05D005468 2.7e-16 88.6 92 54.3
SMO358G0561 Selaginella moellendorffii HOM05D004229 ORTHO05D005468 4.6e-16 87.8 72 58.3
AagrBONN_evm.TU.Sc2ySwM_344.2563 Anthoceros agrestis HOM05D004229 ORTHO05D005468 7.9e-16 87.0 75 57.3
CBR_g52606 Chara braunii HOM05D004229 ORTHO05D005468 5.1e-15 84.3 67 62.7
MD07G1170300 Malus domestica HOM05D004229 ORTHO05D005468 3.3e-14 81.6 63 65.1
Sopen01g012580 Solanum pennellii HOM05D004229 ORTHO05D026150 2.8e-13 78.6 52 69.2
MELO3C028235.2 Cucumis melo HOM05D001963 ORTHO05D001863 4.8e-13 77.8 69 58.0
DCAR_006417 Daucus carota HOM05D004229 ORTHO05D005468 8.2e-13 77.0 58 67.2
Sopen01g007880 Solanum pennellii HOM05D000004 ORTHO05D000002 1.4e-12 76.3 52 69.2
Peaxi162Scf00176g01310 Petunia axillaris HOM05D004229 ORTHO05D005468 2.7e-08 62.0 124 34.7
MCO07G397 Micromonas commoda HOM05D004229 ORTHO05D005468 4.7e-08 61.2 77 45.5
arahy.Tifrunner.gnm1.ann1.EYW761 Arachis hypogaea HOM05D004229 ORTHO05D005468 6.1e-08 60.8 60 58.3
Solyc01g016900.1 Solanum lycopersicum HOM05D004229 ORTHO05D026150 1.4e-07 59.7 53 54.7
arahy.Tifrunner.gnm1.ann1.1PX64U Arachis hypogaea HOM05D004229 ORTHO05D005468 3.9e-07 58.2 42 66.7
arahy.Tifrunner.gnm1.ann1.LJ1MV6 Arachis hypogaea HOM05D004229 ORTHO05D005468 3.9e-07 58.2 42 66.7
Carub.0005s2206 Capsella rubella HOM05D004229 ORTHO05D005468 3.9e-07 58.2 42 66.7
arahy.Tifrunner.gnm1.ann1.LC1BQN Arachis hypogaea HOM05D004229 ORTHO05D005468 6.7e-07 57.4 42 66.7
arahy.Tifrunner.gnm1.ann1.DJS8Z9 Arachis hypogaea HOM05D004229 ORTHO05D005468 2.6e-06 55.5 42 61.9


User provided reference genes

Program Settings