Gene: AT3G54860

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G54860
  • Transcript Identifier AT3G54860.1
  • Gene Type Coding gene
  • Location Chr3 : 20324286-20329841 : negative

Gene Family Information

  • ID HOM05D004229
  • #Genes/#Species 168/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G54860.1
  • symbol ATVPS33
  • uniprot Q94KJ7

Descriptions

  • Description Sec1/munc18-like (SM) proteins superfamily
  • Computational description ATVPS33; CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619); BEST Arabidopsis thaliana protein match is: vacuolar protein sorting 45 (TAIR:AT1G77140.1); Has 1699 Blast hits to 1677 proteins in 225 species: Archae - 0; Bacteria - 0; Metazoa - 761; Fungi - 432; Plants - 184; Viruses - 0; Other Eukaryotes - 322 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016192
IBA
GOA Databasevesicle-mediated transport
GO:0016192
IEA
Gene Ontologyvesicle-mediated transport
GO:0016192
IEA
InterProvesicle-mediated transport
GO:0007033
TAS
Gene Ontologyvacuole organization1
GO:0006886
IBA
GOA Databaseintracellular protein transport

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009705
IDA
Gene Ontologyplant-type vacuole membrane1
GO:0032991
IPI
Gene Ontologyprotein-containing complex1
GO:0030897
IDA
Gene OntologyHOPS complex2
GO:0033263
IBA
GOA DatabaseCORVET complex
GO:0033263
IDA
Gene OntologyCORVET complex2
GO:0005774
IEA
GOA Databasevacuolar membrane
GO:0005773
IBA
IEA
GOA Databasevacuole
GO:0016020
IEA
GOA Databasemembrane

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR043154 Sec1-like, domain 1
IPR036045 Sec1-like superfamily
IPR001619 Sec1-like protein
IPR043155 Vacuolar protein sorting-associated protein 33, domain 3b
IPR043127 Sec1-like, domain 3a
IPR027482 Sec1-like, domain 2
Mapman id Description
22.3.4.9.4 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.HOPS/CORVET tethering complexes.component VPS33