Gene: Sopen01g007880
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen01g007880
- Transcript Identifier Sopen01g007880.1
- Gene Type Coding gene
- Location Spenn-ch01 : 11415083-11422656 : negative
Gene Family Information
- ID HOM05D000004
- #Genes/#Species 19584/91
- Phylogenetic origin
- ID ORTHO05D000002
- #Genes/#Species 15655/89
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- tid Sopen01g007880.1
Descriptions
- Description RNA-directed DNA polymerase homolog (Reverse transcriptase homolog) - Oenothera bertiana (Berteros evening primrose), Homologous to yeast VPS33. Forms a complex with VCL1 and AtVPS11. Involved in vacuolar biogenesis. | ATVPS33 | CONTAINS InterPro DOMAIN/s: Sec1-like protein | BEST Arabidopsis thaliana protein match is: vacuolar protein sorting 45
- Loading (ortholog descriptions from ath)...
Functional Annotation
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0008270 | IEA | InterPro | zinc ion binding |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR043127 | Sec1-like, domain 3a |
| IPR000477 | Reverse transcriptase domain |
| IPR043128 | Reverse transcriptase/Diguanylate cyclase domain |
| IPR036045 | Sec1-like superfamily |
| IPR001878 | Zinc finger, CCHC-type |
| IPR036875 | Zinc finger, CCHC-type superfamily |
| IPR005162 | Retrotransposon gag domain |
| IPR021109 | Aspartic peptidase domain superfamily |
| IPR043502 | DNA/RNA polymerase superfamily |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |