Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0230831 Rosa chinensis HOM05D004528 ORTHO05D005815 7.6e-14 79.3 42 100.0
RcHm_v2.0_Chr2g0093221 Rosa chinensis HOM05D004528 ORTHO05D005815 7.9e-11 69.3 40 90.0
FvH4_1g07290 Fragaria vesca HOM05D004528 ORTHO05D005815 2.3e-10 67.8 40 87.5
FAN19G1322 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.3e-10 67.8 40 87.5
FAN23G0078 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.3e-10 67.8 40 87.5
FAN23G1719 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.3e-10 67.8 40 87.5
CiPaw.03G217000 Carya illinoinensis HOM05D004528 ORTHO05D005815 3.9e-10 67.0 40 85.0
Haze_25904 Corylus avellana HOM05D004528 ORTHO05D005815 3.9e-10 67.0 40 85.0
Lalb_Chr13g0299741 Lupinus albus HOM05D004528 ORTHO05D005815 3.9e-10 67.0 38 86.8
Nn6g35452 Nelumbo nucifera HOM05D004528 ORTHO05D005815 3.9e-10 67.0 40 85.0
SGA_v2.0_scaffold62G21604 Striga asiatica HOM05D004528 ORTHO05D005815 3.9e-10 67.0 40 85.0
FAN28G2769 Fragaria x ananassa HOM05D004528 ORTHO05D005815 5.1e-10 66.6 40 85.0
Aqoxy7G01232 Aquilegia oxysepala HOM05D004528 ORTHO05D005815 8.7e-10 65.9 40 82.5
CSS0033534 Camellia sinensis var. sinensis HOM05D004528 ORTHO05D005815 8.7e-10 65.9 40 82.5
CAN.G1208.1 Capsicum annuum HOM05D004528 ORTHO05D005815 8.7e-10 65.9 38 84.2
Cc06_g11330 Coffea canephora HOM05D004528 ORTHO05D005815 8.7e-10 65.9 40 82.5
DCAR_011978 Daucus carota HOM05D004528 ORTHO05D005815 8.7e-10 65.9 40 82.5
Dinv36760 Davidia involucrata HOM05D004528 ORTHO05D005815 8.7e-10 65.9 40 82.5
Hma1.2p1_0800F.1_g220090 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 8.7e-10 65.9 40 82.5
Hma1.2p1_0800F.1_g220100 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 8.7e-10 65.9 40 82.5
Nitab4.5_0005634g0070 Nicotiana tabacum HOM05D004528 ORTHO05D005815 8.7e-10 65.9 38 84.2
Nitab4.5_0011030g0010 Nicotiana tabacum HOM05D004528 ORTHO05D005815 8.7e-10 65.9 38 84.2
PSO063G0639 Papaver somniferum HOM05D004528 ORTHO05D005815 8.7e-10 65.9 38 84.2
Peaxi162Scf00709g00003 Petunia axillaris HOM05D004528 ORTHO05D005815 8.7e-10 65.9 38 84.2
QL02p062827 Quercus lobata HOM05D004528 ORTHO05D005815 8.7e-10 65.9 40 82.5
SalBow6G2464 Salvia bowleyana HOM05D004528 ORTHO05D005815 8.7e-10 65.9 38 84.2
Ca_08460_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 1.1e-09 65.5 38 84.2
Ca_30052_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 1.1e-09 65.5 38 84.2
Migut.J00603 Erythranthe guttata HOM05D004528 ORTHO05D005815 1.1e-09 65.5 40 82.5
Medtr7g091650 Medicago truncatula HOM05D004528 ORTHO05D005815 1.1e-09 65.5 38 84.2
PSO832G3660 Papaver somniferum HOM05D004528 ORTHO05D005815 1.1e-09 65.5 38 81.6
TPR.G3725 Trifolium pratense HOM05D004528 ORTHO05D005815 1.1e-09 65.5 38 84.2
TAR626G1836 Trochodendron aralioides HOM05D004528 ORTHO05D005815 1.1e-09 65.5 38 84.2
Ah.14g085220 Amaranthus hybridus HOM05D004528 ORTHO05D005815 1.5e-09 65.1 38 81.6
FAN26G1375 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.5e-09 65.1 40 85.0
FAN26G2732 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.5e-09 65.1 40 85.0
MD15G1206300 Malus domestica HOM05D004528 ORTHO05D005815 1.5e-09 65.1 40 80.0
Solyc07g039210.4 Solanum lycopersicum HOM05D004528 ORTHO05D005815 1.5e-09 65.1 38 78.9
Rhsim05G0022000 Rhododendron simsii HOM05D004528 ORTHO05D005815 1.9e-09 64.7 40 80.0
vmacro17227 Vaccinium macrocarpon HOM05D004528 ORTHO05D005815 1.9e-09 64.7 40 80.0
GSVIVG01015212001 Vitis vinifera HOM05D004528 ORTHO05D005815 1.9e-09 64.7 40 80.0
Aa31LG8G16570 Aethionema arabicum HOM05D004528 ORTHO05D005815 2.5e-09 64.3 38 81.6
AT2G19560 Arabidopsis thaliana HOM05D004528 ORTHO05D005815 2.5e-09 64.3 40 80.0
arahy.Tifrunner.gnm1.ann1.A138U3 Arachis hypogaea HOM05D004528 ORTHO05D005815 2.5e-09 64.3 38 81.6
arahy.Tifrunner.gnm1.ann1.PT0GJ5 Arachis hypogaea HOM05D004528 ORTHO05D005815 2.5e-09 64.3 38 81.6
BcaB03g16744 Brassica carinata HOM05D004528 ORTHO05D005815 2.5e-09 64.3 38 81.6
BcaB08g34873 Brassica carinata HOM05D004528 ORTHO05D005815 2.5e-09 64.3 38 81.6
BcaC05g26001 Brassica carinata HOM05D004528 ORTHO05D005815 2.5e-09 64.3 38 81.6
BcaC06g36598 Brassica carinata HOM05D004528 ORTHO05D005815 2.5e-09 64.3 38 81.6
A07p01220 Brassica napus HOM05D004528 ORTHO05D005815 2.5e-09 64.3 38 81.6
C05p19590 Brassica napus HOM05D004528 ORTHO05D005815 2.5e-09 64.3 38 81.6
C07p02330 Brassica napus HOM05D004528 ORTHO05D005815 2.5e-09 64.3 38 81.6
BolC5t30662H Brassica oleracea HOM05D004528 ORTHO05D005815 2.5e-09 64.3 38 81.6
BolC7t40641H Brassica oleracea HOM05D004528 ORTHO05D005815 2.5e-09 64.3 38 81.6
BraA07t27910Z Brassica rapa HOM05D004528 ORTHO05D005815 2.5e-09 64.3 38 81.6
CANSAT56G0596 Cannabis sativa HOM05D004528 ORTHO05D005815 2.5e-09 64.3 38 81.6
CANSAT56G1313 Cannabis sativa HOM05D004528 ORTHO05D005815 2.5e-09 64.3 38 81.6
Carub.0003s3385 Capsella rubella HOM05D004528 ORTHO05D005815 2.5e-09 64.3 40 80.0
CARHR109990 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.5e-09 64.3 40 80.0
Duzib150G1454 Durio zibethinus HOM05D004528 ORTHO05D005815 2.5e-09 64.3 40 80.0
Thhalv10022707m.g Eutrema salsugineum HOM05D004528 ORTHO05D005815 2.5e-09 64.3 38 81.6
Glyma.13G103500 Glycine max HOM05D004528 ORTHO05D005815 2.5e-09 64.3 38 81.6
Glyma.17G055500 Glycine max HOM05D004528 ORTHO05D005815 2.5e-09 64.3 38 81.6
Gorai.010G082500 Gossypium raimondii HOM05D004528 ORTHO05D005815 2.5e-09 64.3 40 80.0
MBI01_g09956_MAGBIO Magnolia biondii HOM05D004528 ORTHO05D005815 2.5e-09 64.3 40 80.0
Manes.16G102700 Manihot esculenta HOM05D004528 ORTHO05D005815 2.5e-09 64.3 40 80.0
Phvul.003G137300 Phaseolus vulgaris HOM05D004528 ORTHO05D005815 2.5e-09 64.3 38 81.6
Potri.006G221700 Populus trichocarpa HOM05D004528 ORTHO05D005815 2.5e-09 64.3 38 81.6
Prupe.7G211100 Prunus persica HOM05D004528 ORTHO05D005815 2.5e-09 64.3 38 81.6
PGR142G0229 Punica granatum HOM05D004528 ORTHO05D005815 2.5e-09 64.3 38 81.6
Sabra06G0171200 Salix brachista HOM05D004528 ORTHO05D005815 2.5e-09 64.3 38 81.6
Sp3g32930 Schrenkiella parvula HOM05D004528 ORTHO05D005815 2.5e-09 64.3 38 81.6
Sopen07g017560 Solanum pennellii HOM05D004528 ORTHO05D005815 2.5e-09 64.3 38 78.9
THA.LOC104820025 Tarenaya hassleriana HOM05D004528 ORTHO05D005815 2.5e-09 64.3 40 80.0
Thecc.09G090300 Theobroma cacao HOM05D004528 ORTHO05D005815 2.5e-09 64.3 40 80.0
TWI34G0432 Tripterygium wilfordii HOM05D004528 ORTHO05D005815 2.5e-09 64.3 38 81.6
VMungo1215G0680 Vigna mungo HOM05D004528 ORTHO05D005815 2.5e-09 64.3 38 81.6
ATR0026G021 Amborella trichopoda HOM05D004528 ORTHO05D005815 3.3e-09 63.9 38 81.6
AL3G48690 Arabidopsis lyrata HOM05D004528 ORTHO05D005815 3.3e-09 63.9 40 77.5
MSTRG.17774 Avicennia marina HOM05D004528 ORTHO05D005815 3.3e-09 63.9 40 80.0
PGSC0003DMG400013151 Solanum tuberosum HOM05D004528 ORTHO05D005815 3.3e-09 63.9 38 78.9
HPP92_010493 Vanilla planifolia HOM05D004528 ORTHO05D005815 3.3e-09 63.9 38 81.6
Cpa.g.sc283.9 Carica papaya HOM05D004528 ORTHO05D005815 4.3e-09 63.5 38 78.9
Ciclev10008462m.g Citrus clementina HOM05D004528 ORTHO05D005815 4.3e-09 63.5 40 80.0
ECA240G0155 Erigeron canadensis HOM05D004528 ORTHO05D005815 4.3e-09 63.5 40 77.5
Lsat_1_v5_gn_7_37341 Lactuca sativa HOM05D004528 ORTHO05D005815 4.3e-09 63.5 40 77.5
Lj4g0008156 Lotus japonicus HOM05D004528 ORTHO05D005815 4.3e-09 63.5 38 81.6
MD02G1077700 Malus domestica HOM05D004528 ORTHO05D005815 4.3e-09 63.5 40 77.5
Os09g0386400 Oryza sativa ssp. japonica HOM05D004528 ORTHO05D005815 4.3e-09 63.5 38 78.9
Zm00001eb311810 Zea mays HOM05D004528 ORTHO05D005815 4.3e-09 63.5 38 78.9
COL.COLO4_18209 Corchorus olitorius HOM05D004528 ORTHO05D005815 5.6e-09 63.2 38 78.9
Oeu018425.1 Olea europaea HOM05D004528 ORTHO05D005815 5.6e-09 63.2 40 77.5
Psat3g072560 Pisum sativum HOM05D004528 ORTHO05D005815 7.4e-09 62.8 38 78.9
BcaB04g16932 Brassica carinata HOM05D004528 ORTHO05D005815 9.6e-09 62.4 38 78.9
BcaB04g16933 Brassica carinata HOM05D004528 ORTHO05D005815 9.6e-09 62.4 38 78.9
SHI24590 Sapria himalayana HOM05D004528 ORTHO05D005815 9.6e-09 62.4 40 77.5
AUR62027494 Chenopodium quinoa HOM05D004528 ORTHO05D005815 1.3e-08 62.0 38 76.3
AUR62033986 Chenopodium quinoa HOM05D004528 ORTHO05D005815 1.3e-08 62.0 38 76.3
Pp3c17_12810 Physcomitrium patens HOM05D004528 ORTHO05D005815 1.3e-08 62.0 38 73.7
Sed0012435 Sechium edule HOM05D004528 ORTHO05D005815 1.3e-08 62.0 38 81.6
CARHR052830 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.6e-08 61.6 38 76.3
ClCG11G001780 Citrullus lanatus HOM05D004528 ORTHO05D005815 1.6e-08 61.6 38 78.9
MELO3C004622.2 Cucumis melo HOM05D004528 ORTHO05D005815 1.6e-08 61.6 38 78.9
CsaV3_2G001490 Cucumis sativus L. HOM05D004528 ORTHO05D005815 1.6e-08 61.6 38 78.9
Mapoly0005s0151 Marchantia polymorpha HOM05D004528 ORTHO05D005815 1.6e-08 61.6 38 76.3
Eucgr.C00900 Eucalyptus grandis HOM05D004528 ORTHO05D005815 2.1e-08 61.2 38 76.3
SEGI_06455 Sequoiadendron giganteum HOM05D004528 ORTHO05D005815 2.1e-08 61.2 38 76.3
Lj7A674G30 Lonicera japonica HOM05D004528 ORTHO05D005815 2.8e-08 60.8 40 77.5
CARHR051760 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.7e-08 60.5 38 73.7
RcHm_v2.0_Chr7g0206721 Rosa chinensis HOM05D004528 ORTHO05D005815 1.8e-07 58.2 36 83.3
SMO117G0048 Selaginella moellendorffii HOM05D004528 ORTHO05D005815 1.8e-07 58.2 38 71.1
EL10Ac8g19227 Beta vulgaris HOM05D004528 ORTHO05D005815 2.4e-07 57.8 34 79.4
unitig_748.g7306 Utricularia gibba HOM05D004528 ORTHO05D005815 6.9e-07 56.2 34 76.5
CARHR054260 Cardamine hirsuta HOM05D004528 ORTHO05D005815 9.0e-07 55.8 38 73.7
AagrBONN_evm.TU.Sc2ySwM_344.906 Anthoceros agrestis HOM05D004528 ORTHO05D005815 1.5e-06 55.1 38 65.8


User provided reference genes

Program Settings