Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0230591 Rosa chinensis HOM05D004863 ORTHO05D005802 8.1e-45 183.3 91 100.0
RcHm_v2.0_Chr0c11g0499371 Rosa chinensis HOM05D004863 ORTHO05D005802 2.4e-41 171.8 91 92.3
RcHm_v2.0_Chr0c11g0499581 Rosa chinensis HOM05D004863 ORTHO05D005802 2.4e-41 171.8 91 92.3
RcHm_v2.0_Chr7g0236141 Rosa chinensis HOM05D004863 ORTHO05D005802 2.4e-41 171.8 91 92.3
RcHm_v2.0_Chr7g0236461 Rosa chinensis HOM05D004863 ORTHO05D005802 2.4e-41 171.8 91 92.3
RcHm_v2.0_Chr7g0236501 Rosa chinensis HOM05D004863 ORTHO05D005802 2.4e-41 171.8 91 92.3
FAN04G1688 Fragaria x ananassa HOM05D004863 ORTHO05D005802 5.4e-41 170.6 91 90.1
FvH4_5g35270 Fragaria vesca HOM05D004863 ORTHO05D005802 7.1e-41 170.2 91 90.1
FAN08G0290 Fragaria x ananassa HOM05D004863 ORTHO05D005802 2.7e-40 168.3 91 89.0
FAN18G0869 Fragaria x ananassa HOM05D004863 ORTHO05D005802 3.5e-40 167.9 91 89.0
FAN13G2483 Fragaria x ananassa HOM05D004863 ORTHO05D005802 5.1e-39 164.1 90 87.8
RcHm_v2.0_Chr7g0231161 Rosa chinensis HOM05D004863 ORTHO05D005802 3.3e-38 161.4 101 82.2
RcHm_v2.0_Chr7g0236431 Rosa chinensis HOM05D004863 ORTHO05D005802 9.9e-35 149.8 100 78.0
Manes.10G009400 Manihot esculenta HOM05D004863 ORTHO05D005802 1.3e-29 132.9 91 63.7
Dinv21763 Davidia involucrata HOM05D004863 ORTHO05D005802 1.4e-28 129.4 91 62.6
MD12G1179600 Malus domestica HOM05D004863 ORTHO05D005802 2.4e-28 128.6 91 67.0
Potri.008G072300 Populus trichocarpa HOM05D004863 ORTHO05D005802 3.1e-28 128.3 90 62.2
TWI09G1305 Tripterygium wilfordii HOM05D004863 ORTHO05D005802 4.0e-28 127.9 91 63.7
Cfa001286 Carpinus fangiana HOM05D004863 ORTHO05D005802 5.3e-28 127.5 91 63.7
Hma1.2p1_3100F.1_g332690 Hydrangea macrophylla HOM05D004863 ORTHO05D005802 5.3e-28 127.5 91 65.9
GSVIVG01032766001 Vitis vinifera HOM05D004863 ORTHO05D005802 9.0e-28 126.7 91 65.9
Ciclev10031002m.g Citrus clementina HOM05D004863 ORTHO05D005802 1.2e-27 126.3 92 65.2
PGR142G2246 Punica granatum HOM05D004863 ORTHO05D005802 1.5e-27 125.9 91 61.5
Cpa.g.sc19.141 Carica papaya HOM05D004863 ORTHO05D005802 5.8e-27 124.0 91 64.8
QL08p063631 Quercus lobata HOM05D004863 ORTHO05D005802 5.8e-27 124.0 90 62.2
Sopen06g031290 Solanum pennellii HOM05D004863 ORTHO05D005802 5.8e-27 124.0 91 63.7
Aqoxy1G01634 Aquilegia oxysepala HOM05D004863 ORTHO05D005802 7.6e-27 123.6 91 60.4
Aqoxy5G04144 Aquilegia oxysepala HOM05D004863 ORTHO05D005802 7.6e-27 123.6 91 60.4
CARHR207780 Cardamine hirsuta HOM05D004863 ORTHO05D005802 1.0e-26 123.2 91 63.7
CAN.G1432.18 Capsicum annuum HOM05D004863 ORTHO05D005802 2.2e-26 122.1 91 61.5
Eucgr.G03083 Eucalyptus grandis HOM05D004863 ORTHO05D005802 2.2e-26 122.1 91 61.5
RcHm_v2.0_Chr5g0049701 Rosa chinensis HOM05D004863 ORTHO05D005802 2.9e-26 121.7 65 90.8
CAN.G1001.50 Capsicum annuum HOM05D004863 ORTHO05D005802 4.9e-26 120.9 91 61.5
SalBow3G1147 Salvia bowleyana HOM05D004863 ORTHO05D005802 1.1e-25 119.8 92 64.1
TAR357G0004 Trochodendron aralioides HOM05D004863 ORTHO05D005802 1.1e-25 119.8 91 59.3
CANSAT32G0002 Cannabis sativa HOM05D004863 ORTHO05D005802 1.4e-25 119.4 91 58.2
CANSAT56G0816 Cannabis sativa HOM05D004863 ORTHO05D005802 1.4e-25 119.4 91 58.2
SGA_v2.0_scaffold60G20969 Striga asiatica HOM05D004863 ORTHO05D005802 1.9e-25 119.0 91 59.3
CiPaw.01G301000 Carya illinoinensis HOM05D004863 ORTHO05D005802 2.5e-25 118.6 91 59.3
Migut.F00644 Erythranthe guttata HOM05D004863 ORTHO05D005802 2.5e-25 118.6 92 62.0
Prupe.2G254800 Prunus persica HOM05D004863 ORTHO05D005802 2.5e-25 118.6 90 62.2
BcaC06g32260 Brassica carinata HOM05D004863 ORTHO05D005297 5.5e-25 117.5 90 62.2
C09p71270 Brassica napus HOM05D004863 ORTHO05D005297 5.5e-25 117.5 90 62.2
BolC9t59888H Brassica oleracea HOM05D004863 ORTHO05D005802 5.5e-25 117.5 90 62.2
Sabra08G0053500 Salix brachista HOM05D004863 ORTHO05D005802 5.5e-25 117.5 101 55.4
A10p30780 Brassica napus HOM05D004863 ORTHO05D005297 7.1e-25 117.1 90 62.2
BraA10t45119Z Brassica rapa HOM05D004863 ORTHO05D005297 7.1e-25 117.1 90 62.2
Carub.0006s0439 Capsella rubella HOM05D004863 ORTHO05D005802 1.6e-24 115.9 90 62.2
Thhalv10013002m.g Eutrema salsugineum HOM05D004863 ORTHO05D005802 2.1e-24 115.5 91 60.4
Sp6g37360 Schrenkiella parvula HOM05D004863 ORTHO05D005802 2.7e-24 115.2 91 60.4
AL6G15380 Arabidopsis lyrata HOM05D004863 ORTHO05D005802 3.5e-24 114.8 90 61.1
Atru.chr12.77 Acer truncatum HOM05D004863 ORTHO05D005802 6.0e-24 114.0 93 58.1
MSTRG.8933 Avicennia marina HOM05D004863 ORTHO05D005802 1.0e-23 113.2 92 56.5
ECA233G5735 Erigeron canadensis HOM05D000718 ORTHO05D005802 1.3e-23 112.8 92 59.8
Nitab4.5_0001163g0110 Nicotiana tabacum HOM05D004863 ORTHO05D005802 1.8e-23 112.5 112 51.8
AT5G05490 Arabidopsis thaliana HOM05D004863 ORTHO05D005802 3.0e-23 111.7 90 60.0
Lalb_Chr10g0105231 Lupinus albus HOM05D004863 ORTHO05D005802 3.0e-23 111.7 91 60.4
ECA234G2111 Erigeron canadensis HOM05D004863 ORTHO05D005802 1.1e-22 109.8 92 58.7
THA.LOC104816534 Tarenaya hassleriana HOM05D004863 ORTHO05D005802 1.9e-22 109.0 91 59.3
LjContig00357g0010590 Lotus japonicus HOM05D004863 ORTHO05D005802 2.5e-22 108.6 91 57.1
Sed0025167 Sechium edule HOM05D004863 ORTHO05D005802 2.5e-22 108.6 94 54.3
Ca_05983_v3 Cicer arietinum L. HOM05D004863 ORTHO05D005802 5.7e-22 107.5 91 58.2
Ca_05985_v3 Cicer arietinum L. HOM05D004863 ORTHO05D005802 5.7e-22 107.5 91 58.2
Nn2g10959 Nelumbo nucifera HOM05D004863 ORTHO05D005802 5.7e-22 107.5 90 56.7
Sed0002460 Sechium edule HOM05D004863 ORTHO05D005802 5.7e-22 107.5 94 54.3
Sc10g0002560 Simmondsia chinensis HOM05D004863 ORTHO05D005802 7.4e-22 107.1 92 59.8
arahy.Tifrunner.gnm1.ann1.U87T4F Arachis hypogaea HOM05D004863 ORTHO05D005802 2.2e-21 105.5 91 56.0
Nitab4.5_0012306g0020 Nicotiana tabacum HOM05D004863 ORTHO05D005802 2.8e-21 105.1 128 45.3
unitig_46.g18609 Utricularia gibba HOM05D004863 ORTHO05D005802 2.8e-21 105.1 91 52.7
arahy.Tifrunner.gnm1.ann1.SVWC8K Arachis hypogaea HOM05D004863 ORTHO05D005802 3.7e-21 104.8 92 55.4
Medtr5g081260 Medicago truncatula HOM05D004863 ORTHO05D005802 4.8e-21 104.4 96 56.2
Aa31LG11G6560 Aethionema arabicum HOM05D004863 ORTHO05D005802 8.2e-21 103.6 91 57.1
CsaV3_5G010370 Cucumis sativus L. HOM05D004863 ORTHO05D005802 8.2e-21 103.6 93 53.8
MELO3C018373.2 Cucumis melo HOM05D004863 ORTHO05D005802 1.1e-20 103.2 93 52.7
ClCG07G004460 Citrullus lanatus HOM05D004863 ORTHO05D005802 1.8e-20 102.4 90 54.4
COL.COLO4_25779 Corchorus olitorius HOM05D007663 ORTHO05D009455 2.4e-20 102.1 78 61.5
Glyma.14G057200 Glycine max HOM05D004863 ORTHO05D005802 2.4e-20 102.1 91 56.0
PSO017G6293 Papaver somniferum HOM05D004863 ORTHO05D005802 3.1e-20 101.7 93 55.9
TPR.G38454 Trifolium pratense HOM05D004863 ORTHO05D005802 3.1e-20 101.7 90 55.6
Duzib128G0112 Durio zibethinus HOM05D004863 ORTHO05D005802 4.1e-20 101.3 84 56.0
Ah.16g103820 Amaranthus hybridus HOM05D004863 ORTHO05D005802 5.3e-20 100.9 91 54.9
Ah.16g108070 Amaranthus hybridus HOM05D004863 ORTHO05D005802 5.3e-20 100.9 91 54.9
AUR62012290 Chenopodium quinoa HOM05D004863 ORTHO05D005802 6.9e-20 100.5 91 54.9
AUR62022930 Chenopodium quinoa HOM05D004863 ORTHO05D005802 6.9e-20 100.5 91 54.9
HPP92_003692 Vanilla planifolia HOM05D004863 ORTHO05D005802 6.9e-20 100.5 91 54.9
PSO170G5836 Papaver somniferum HOM05D004863 ORTHO05D005802 1.2e-19 99.8 93 55.9
Phvul.001G192700 Phaseolus vulgaris HOM05D004863 ORTHO05D005802 1.5e-19 99.4 91 54.9
TPR.G25338 Trifolium pratense HOM05D004863 ORTHO05D005802 1.5e-19 99.4 91 54.9
Phvul.008G221700 Phaseolus vulgaris HOM05D004863 ORTHO05D005802 2.0e-19 99.0 91 53.8
Thecc.10G012000 Theobroma cacao HOM05D004863 ORTHO05D005802 5.9e-19 97.4 79 58.2
EL10Ac2g04883 Beta vulgaris HOM05D004863 ORTHO05D005802 1.0e-18 96.7 91 51.6
EL10Ac8g19300 Beta vulgaris HOM05D004863 ORTHO05D005802 1.3e-18 96.3 91 52.7
Phvul.007G217900 Phaseolus vulgaris HOM05D004863 ORTHO05D005802 1.7e-18 95.9 88 53.4
Haze_17264 Corylus avellana HOM05D000087 ORTHO05D000793 5.0e-18 94.4 65 66.2
TAR362G0045 Trochodendron aralioides HOM05D004863 ORTHO05D005802 5.0e-18 94.4 91 51.6
HanXRQChr08g0221801 Helianthus annuus HOM05D004863 ORTHO05D005802 6.5e-18 94.0 119 45.4
Psat2g030120 Pisum sativum HOM05D004863 ORTHO05D005802 8.5e-18 93.6 91 51.6
Gohir.D04G070101 Gossypium hirsutum HOM05D004863 ORTHO05D005802 1.1e-17 93.2 84 51.2
Gorai.012G078600 Gossypium raimondii HOM05D004863 ORTHO05D005802 1.1e-17 93.2 84 51.2
CDE09G0264 Ceratophyllum demersum HOM05D004863 ORTHO05D005802 2.5e-17 92.0 90 47.8
Gohir.A05G331501 Gossypium hirsutum HOM05D004863 ORTHO05D005802 2.5e-17 92.0 84 50.0
Medtr5g083120 Medicago truncatula HOM05D004863 ORTHO05D005802 9.3e-17 90.1 96 50.0
VMungo0647G0293 Vigna mungo HOM05D004863 ORTHO05D005802 1.2e-16 89.7 75 58.7
Cc02_g05730 Coffea canephora HOM05D004863 ORTHO05D005802 6.1e-16 87.4 93 48.4
Actinidia00665 Actinidia chinensis HOM05D004863 ORTHO05D005802 1.0e-15 86.7 63 60.3
PSO063G7659 Papaver somniferum HOM05D004863 ORTHO05D005802 1.4e-15 86.3 93 50.5
SEGI_17620 Sequoiadendron giganteum HOM05D004863 ORTHO05D005802 1.7e-13 79.3 94 46.8
DCAR_011837 Daucus carota HOM05D004863 ORTHO05D001062 1.4e-12 76.3 64 54.7
Lj4g0013997 Lotus japonicus HOM05D004863 ORTHO05D005802 3.1e-12 75.1 87 47.1
MBI03_g10782_MAGBIO Magnolia biondii HOM05D004863 ORTHO05D005802 5.3e-12 74.3 62 56.5
ATR0174G036 Amborella trichopoda HOM05D004863 ORTHO05D005802 1.0e-10 70.1 90 40.0
SMO142G0069 Selaginella moellendorffii HOM05D004863 ORTHO05D005802 7.2e-09 63.9 87 40.2
FAN18G1445 Fragaria x ananassa HOM05D004863 ORTHO05D005802 2.7e-08 62.0 51 64.7
Mapoly0041s0038 Marchantia polymorpha HOM05D004863 ORTHO05D005802 2.7e-08 62.0 74 45.9
PSO170G1093 Papaver somniferum HOM05D004863 ORTHO05D005802 3.6e-08 61.6 58 55.2
Pp3c3_26738 Physcomitrium patens HOM05D004863 ORTHO05D005802 1.8e-07 59.3 93 36.6
Rhsim09G0179600 Rhododendron simsii HOM05D004863 ORTHO05D005802 3.9e-07 58.2 91 38.5


User provided reference genes

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