Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0226611 Rosa chinensis HOM05D005778 ORTHO05D007245 2.7e-278 961.4 519 100.0
Prupe.6G166800 Prunus persica HOM05D005778 ORTHO05D007245 2.2e-179 632.9 563 63.6
MD15G1335700 Malus domestica HOM05D005778 ORTHO05D007245 1.8e-165 586.6 570 62.1
FvH4_1g23210 Fragaria vesca HOM05D005778 ORTHO05D007245 6.3e-158 561.6 566 57.2
FAN19G0143 Fragaria x ananassa HOM05D005778 ORTHO05D007245 3.0e-152 542.7 581 56.3
Atru.chr4.723 Acer truncatum HOM05D005778 ORTHO05D007245 7.4e-151 538.1 575 54.1
Prupe.1G550600 Prunus persica HOM05D005778 ORTHO05D007245 2.2e-150 536.6 582 56.4
FAN23G1488 Fragaria x ananassa HOM05D005778 ORTHO05D007245 4.6e-145 518.8 543 56.5
TWI79G0191 Tripterygium wilfordii HOM05D005778 ORTHO05D007245 5.7e-143 511.9 596 50.3
RcHm_v2.0_Chr2g0117911 Rosa chinensis HOM05D005778 ORTHO05D007245 3.2e-138 496.1 367 70.8
FvH4_5g31350 Fragaria vesca HOM05D005778 ORTHO05D007245 4.2e-138 495.7 298 85.9
Cfa002785 Carpinus fangiana HOM05D005778 ORTHO05D007245 7.2e-138 495.0 571 52.5
CiPaw.03G131700 Carya illinoinensis HOM05D005778 ORTHO05D007245 1.6e-137 493.8 577 52.3
Thecc.01G117000 Theobroma cacao HOM05D005778 ORTHO05D007245 3.9e-136 489.2 579 51.3
Gorai.011G114700 Gossypium raimondii HOM05D005778 ORTHO05D007245 1.3e-134 484.2 576 52.6
Sed0016319 Sechium edule HOM05D005778 ORTHO05D007245 2.2e-134 483.4 563 49.7
Manes.12G145400 Manihot esculenta HOM05D005778 ORTHO05D007245 7.0e-133 478.4 589 48.7
Ciclev10025290m.g Citrus clementina HOM05D005778 ORTHO05D007245 1.2e-132 477.6 565 51.2
CsaV3_6G042140 Cucumis sativus L. HOM05D005778 ORTHO05D007245 1.3e-131 474.2 565 50.3
Dinv16426 Davidia involucrata HOM05D005778 ORTHO05D007245 1.3e-131 474.2 534 54.3
PGR119G1966 Punica granatum HOM05D005778 ORTHO05D007245 8.5e-131 471.5 602 49.3
Eucgr.I00295 Eucalyptus grandis HOM05D005778 ORTHO05D007245 9.4e-130 468.0 343 67.1
ClCG01G015860 Citrullus lanatus HOM05D005778 ORTHO05D007245 4.7e-129 465.7 570 48.2
Gohir.D10G105000 Gossypium hirsutum HOM05D005778 ORTHO05D007245 1.4e-128 464.2 576 50.9
Gohir.A10G082700 Gossypium hirsutum HOM05D005778 ORTHO05D007245 3.0e-128 463.0 364 67.0
GSVIVG01022267001 Vitis vinifera HOM05D005778 ORTHO05D007245 6.7e-128 461.8 370 66.2
TAR628G0341 Trochodendron aralioides HOM05D005778 ORTHO05D007245 8.8e-128 461.5 567 51.1
MD15G1404100 Malus domestica HOM05D005778 ORTHO05D007245 7.5e-127 458.4 497 54.1
Lj4g0013346 Lotus japonicus HOM05D005778 ORTHO05D007245 5.9e-124 448.7 559 49.7
CANSAT01G2349 Cannabis sativa HOM05D005778 ORTHO05D007245 2.2e-123 446.8 634 44.8
Nn5g28812 Nelumbo nucifera HOM05D005778 ORTHO05D007245 6.5e-123 445.3 570 47.9
VMungo0251G2366 Vigna mungo HOM05D005778 ORTHO05D007245 1.1e-122 444.5 390 61.0
QL06p031408 Quercus lobata HOM05D005778 ORTHO05D007245 5.5e-122 442.2 667 45.9
Potri.007G077400 Populus trichocarpa HOM05D005778 ORTHO05D007245 5.2e-120 435.6 567 47.8
CDE07G0129 Ceratophyllum demersum HOM05D005778 ORTHO05D007245 8.8e-120 434.9 370 61.1
Rhsim10G0147200 Rhododendron simsii HOM05D005778 ORTHO05D007245 2.0e-119 433.7 321 67.9
SalBow5G2484 Salvia bowleyana HOM05D005778 ORTHO05D007245 2.0e-119 433.7 496 51.4
Lj4C861G1 Lonicera japonica HOM05D005778 ORTHO05D007245 3.4e-119 433.0 644 44.1
Medtr8g092300 Medicago truncatula HOM05D005778 ORTHO05D007245 4.4e-119 432.6 584 46.1
HanXRQChr09g0254171 Helianthus annuus HOM05D005778 ORTHO05D007245 1.3e-118 431.0 402 57.7
Glyma.05G186200 Glycine max HOM05D005778 ORTHO05D007245 2.2e-118 430.3 622 46.5
Phvul.002G267400 Phaseolus vulgaris HOM05D005778 ORTHO05D007245 2.8e-118 429.9 366 62.6
DCAR_016672 Daucus carota HOM05D005778 ORTHO05D007245 4.8e-118 429.1 357 62.7
Lalb_Chr12g0203421 Lupinus albus HOM05D005778 ORTHO05D007245 8.3e-118 428.3 535 48.4
Lsat_1_v5_gn_4_138380 Lactuca sativa HOM05D005778 ORTHO05D007245 9.1e-117 424.9 479 51.6
PSO170G4940 Papaver somniferum HOM05D005778 ORTHO05D007245 2.0e-116 423.7 526 48.1
Aqoxy5G02041 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 2.7e-116 423.3 493 50.9
TPR.G2233 Trifolium pratense HOM05D005778 ORTHO05D007245 3.5e-116 422.9 369 61.0
Actinidia31890 Actinidia chinensis HOM05D005778 ORTHO05D007245 5.0e-115 419.1 505 51.1
Sabra07G0065400 Salix brachista HOM05D005778 ORTHO05D007245 1.5e-114 417.5 582 46.6
arahy.Tifrunner.gnm1.ann1.2KBC6S Arachis hypogaea HOM05D005778 ORTHO05D007245 3.2e-114 416.4 568 47.9
arahy.Tifrunner.gnm1.ann1.A9RKWD Arachis hypogaea HOM05D005778 ORTHO05D007245 4.2e-114 416.0 568 47.7
CSS0023800 Camellia sinensis var. sinensis HOM05D005778 ORTHO05D007245 4.2e-114 416.0 365 61.4
Nitab4.5_0000184g0070 Nicotiana tabacum HOM05D005778 ORTHO05D007245 4.2e-114 416.0 492 50.0
Ca_17674_v3 Cicer arietinum L. HOM05D005778 ORTHO05D007245 1.6e-113 414.1 615 45.4
Psat7g049960 Pisum sativum HOM05D005778 ORTHO05D007245 8.0e-113 411.8 365 59.7
THA.LOC104804137 Tarenaya hassleriana HOM05D005778 ORTHO05D007245 1.0e-112 411.4 547 47.0
Cc07_g16660 Coffea canephora HOM05D005778 ORTHO05D007245 1.8e-112 410.6 310 66.1
SGA_v2.0_scaffold47G17685 Striga asiatica HOM05D005778 ORTHO05D007245 5.7e-111 405.6 355 59.2
Peaxi162Scf00025g03317 Petunia axillaris HOM05D005778 ORTHO05D007245 7.5e-111 405.2 606 44.2
MELO3C007452.2 Cucumis melo HOM05D005778 ORTHO05D007245 3.7e-110 402.9 616 43.3
Sc03g0004580 Simmondsia chinensis HOM05D005778 ORTHO05D007245 5.4e-109 399.1 357 59.1
BolC7t42688H Brassica oleracea HOM05D005778 ORTHO05D007245 7.0e-109 398.7 352 59.4
Sopen04g022870 Solanum pennellii HOM05D005778 ORTHO05D007245 7.0e-109 398.7 476 48.9
Haze_25082 Corylus avellana HOM05D005778 ORTHO05D007245 2.0e-108 397.1 653 43.3
BcaB08g35041 Brassica carinata HOM05D005778 ORTHO05D007245 3.5e-108 396.4 305 64.6
ATR0800G169 Amborella trichopoda HOM05D005778 ORTHO05D007245 4.5e-108 396.0 356 57.9
FAN28G2237 Fragaria x ananassa HOM05D005778 ORTHO05D007245 4.5e-108 396.0 479 50.9
Migut.L00055 Erythranthe guttata HOM05D005778 ORTHO05D007245 5.9e-108 395.6 375 57.9
vmacro12878 Vaccinium macrocarpon HOM05D005778 ORTHO05D007245 1.0e-107 394.8 448 52.0
Solyc04g051490.3 Solanum lycopersicum HOM05D005778 ORTHO05D007245 2.9e-107 393.3 476 48.5
Hund19626 Selenicereus undatus HOM05D005778 ORTHO05D007245 8.6e-107 391.7 383 55.4
Aqoxy4G02517 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 1.1e-106 391.3 492 49.4
Thhalv10000104m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 1.5e-106 391.0 354 57.1
Sp4g01220 Schrenkiella parvula HOM05D005778 ORTHO05D007245 1.9e-106 390.6 354 58.8
CAN.G860.4 Capsicum annuum HOM05D005778 ORTHO05D007245 2.8e-105 386.7 595 42.5
unitig_37.g12529 Utricularia gibba HOM05D005778 ORTHO05D007245 1.4e-104 384.4 362 56.4
BcaC07g41093 Brassica carinata HOM05D005778 ORTHO05D007245 2.3e-104 383.6 354 57.1
BolC8t51659H Brassica oleracea HOM05D005778 ORTHO05D007245 2.3e-104 383.6 354 57.1
AT2G22140 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 3.0e-104 383.3 305 63.0
Carub.0004s0131 Capsella rubella HOM05D005778 ORTHO05D007245 4.0e-104 382.9 358 56.4
C08p40960 Brassica napus HOM05D005778 ORTHO05D007245 2.6e-103 380.2 354 56.5
AL4G11490 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 4.9e-102 375.9 358 56.4
BraA09t41166Z Brassica rapa HOM05D005778 ORTHO05D007245 4.9e-102 375.9 546 45.4
Aa31LG7G14570 Aethionema arabicum HOM05D005778 ORTHO05D007245 1.4e-101 374.4 375 54.1
A09p57740 Brassica napus HOM05D005778 ORTHO05D007245 4.1e-101 372.9 546 44.9
MSTRG.15762 Avicennia marina HOM05D005778 ORTHO05D007245 5.4e-101 372.5 276 66.3
FAN18G1125 Fragaria x ananassa HOM05D005778 ORTHO05D007245 2.0e-100 370.5 273 78.4
CARHR113310 Cardamine hirsuta HOM05D005778 ORTHO05D007245 2.7e-100 370.2 562 44.0
ECA238G1732 Erigeron canadensis HOM05D005778 ORTHO05D007245 5.9e-100 369.0 354 57.1
HPP92_017324 Vanilla planifolia HOM05D005778 ORTHO05D007245 1.0e-96 358.2 307 58.6
BolC4t26687H Brassica oleracea HOM05D005778 ORTHO05D007245 1.2e-95 354.8 350 56.3
Carub.0004s0085 Capsella rubella HOM05D005778 ORTHO05D007245 2.9e-94 350.1 353 53.3
BcaB06g27789 Brassica carinata HOM05D005778 ORTHO05D007245 3.7e-94 349.7 350 56.0
Thhalv10000122m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 2.4e-93 347.1 550 41.6
BcaC02g08761 Brassica carinata HOM05D005778 ORTHO05D007245 3.5e-92 343.2 348 54.9
C04p50950 Brassica napus HOM05D005778 ORTHO05D007245 3.5e-92 343.2 348 54.9
CARHR112840 Cardamine hirsuta HOM05D005778 ORTHO05D007245 8.6e-91 338.6 358 51.7
AL4G11110 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 2.1e-89 334.0 302 56.0
AT2G21800 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 6.2e-89 332.4 303 56.1
FAN26G2893 Fragaria x ananassa HOM05D005778 ORTHO05D007245 4.4e-87 326.2 541 43.3
A04p16440 Brassica napus HOM05D005778 ORTHO05D007245 1.3e-86 324.7 348 52.9
Sp4g00940 Schrenkiella parvula HOM05D005778 ORTHO05D007245 1.7e-86 324.3 549 40.4
Hund03512 Selenicereus undatus HOM05D005778 ORTHO05D007245 4.1e-85 319.7 334 54.5
Zm00001eb068550 Zea mays HOM05D005778 ORTHO05D007245 4.1e-85 319.7 471 41.8
BraA04t17279Z Brassica rapa HOM05D005778 ORTHO05D007245 6.0e-84 315.8 349 51.3
Oeu001980.1 Olea europaea HOM05D005778 ORTHO05D007245 7.8e-84 315.5 651 36.7
EL10Ac6g15224 Beta vulgaris HOM05D005778 ORTHO05D007245 1.1e-82 311.6 369 49.3
Os04g0648700 Oryza sativa ssp. japonica HOM05D005778 ORTHO05D007245 3.8e-78 296.6 361 45.4
AUR62003644 Chenopodium quinoa HOM05D005778 ORTHO05D007245 1.7e-70 271.2 361 46.5
AagrBONN_evm.TU.Sc2ySwM_228.2963 Anthoceros agrestis HOM05D005778 ORTHO05D007245 3.2e-69 266.9 340 41.8
Mapoly0041s0060 Marchantia polymorpha HOM05D005778 ORTHO05D007245 1.1e-66 258.5 345 41.2
Cpa.g.sc72.53 Carica papaya HOM05D005778 ORTHO05D007245 9.3e-61 238.8 435 40.2
Pp3c5_3310 Physcomitrium patens HOM05D005778 ORTHO05D007245 1.8e-59 234.6 467 33.8
COL.COLO4_03471 Corchorus olitorius HOM05D005778 ORTHO05D007245 6.7e-59 232.6 144 73.6
Glyma.08G144700 Glycine max HOM05D005778 ORTHO05D007245 6.2e-57 226.1 186 62.4
Nitab4.5_0011929g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 8.1e-57 225.7 245 52.7
Nitab4.5_0021115g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 3.5e-52 210.3 236 51.7
SMO352G0072 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 3.7e-49 200.3 285 39.3
Cpa.g.sc72.54 Carica papaya HOM05D005778 ORTHO05D007245 6.9e-48 196.1 125 75.2
CBR_g21043 Chara braunii HOM05D005778 ORTHO05D007245 1.2e-39 168.7 391 30.9
Hma1.2p1_0070F.1_g037570 Hydrangea macrophylla HOM05D005778 ORTHO05D007245 2.8e-33 147.5 113 69.9
SMO288G0013 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 9.1e-32 142.5 295 33.6
SEGI_24036 Sequoiadendron giganteum HOM05D005778 ORTHO05D007245 2.3e-27 127.9 98 64.3
PGSC0003DMG400019704 Solanum tuberosum HOM05D005778 ORTHO05D007245 2.1e-20 104.8 68 72.1
CARHR113290 Cardamine hirsuta HOM05D005778 ORTHO05D007245 2.0e-18 98.2 75 58.7
SalBow5G4900 Salvia bowleyana HOM05D005778 ORTHO05D007245 5.7e-18 96.7 188 36.7
Oeu028353.1 Olea europaea HOM05D005778 ORTHO05D007245 4.8e-09 67.0 45 73.3
SMO352G0093 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 1.2e-07 62.4 53 52.8
Oeu017817.1 Olea europaea HOM05D001353 ORTHO05D002359 1.6e-07 62.0 75 37.3
SEGI_25471 Sequoiadendron giganteum HOM05D005778 ORTHO05D007245 2.0e-07 61.6 65 49.2
CARHR113280 Cardamine hirsuta HOM05D000125 ORTHO05D009513 1.0e-06 59.3 37 59.5


User provided reference genes

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