Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0225401 Rosa chinensis HOM05D000809 ORTHO05D001196 1.6e-42 175.6 86 100.0
RcHm_v2.0_Chr2g0091001 Rosa chinensis HOM05D000809 ORTHO05D001196 2.3e-17 92.0 78 61.5
FAN26G0422 Fragaria x ananassa HOM05D000809 ORTHO05D007733 4.0e-17 91.3 79 60.8
FAN26G2813 Fragaria x ananassa HOM05D000809 ORTHO05D007733 4.0e-17 91.3 79 60.8
FAN28G1747 Fragaria x ananassa HOM05D000809 ORTHO05D001196 4.0e-17 91.3 79 60.8
FAN23G0415 Fragaria x ananassa HOM05D000809 ORTHO05D001196 6.8e-17 90.5 79 60.8
FvH4_1g05280 Fragaria vesca HOM05D000809 ORTHO05D001196 3.4e-16 88.2 79 59.5
FAN19G0208 Fragaria x ananassa HOM05D000809 ORTHO05D001196 3.4e-16 88.2 79 59.5
MD15G1189100 Malus domestica HOM05D000809 ORTHO05D001196 3.8e-12 74.7 79 55.7
Nn2g11809 Nelumbo nucifera HOM05D000809 ORTHO05D001196 3.8e-12 74.7 79 55.7
Duzib168G1951 Durio zibethinus HOM05D000809 ORTHO05D001196 2.5e-11 72.0 80 51.2
MD02G1056200 Malus domestica HOM05D000809 ORTHO05D001196 2.5e-11 72.0 79 54.4
CiPaw.03G234700 Carya illinoinensis HOM05D000809 ORTHO05D001196 4.2e-11 71.2 79 54.4
Manes.16G070600 Manihot esculenta HOM05D000809 ORTHO05D001196 4.2e-11 71.2 79 53.2
Prupe.7G227600 Prunus persica HOM05D000809 ORTHO05D007733 4.2e-11 71.2 79 54.4
Hund26130 Selenicereus undatus HOM05D000809 ORTHO05D001196 4.2e-11 71.2 79 54.4
CANSAT56G3555 Cannabis sativa HOM05D000809 ORTHO05D001196 7.2e-11 70.5 79 54.4
QL02p085950 Quercus lobata HOM05D000809 ORTHO05D001196 7.2e-11 70.5 79 54.4
Manes.03G068900 Manihot esculenta HOM05D000809 ORTHO05D001196 9.5e-11 70.1 79 53.2
GSVIVG01015423001 Vitis vinifera HOM05D000809 ORTHO05D001196 9.5e-11 70.1 79 51.9
Haze_25687 Corylus avellana HOM05D000809 ORTHO05D001196 1.2e-10 69.7 79 53.2
Potri.018G076500 Populus trichocarpa HOM05D000809 ORTHO05D001196 1.2e-10 69.7 79 53.2
CiPaw.04G166800 Carya illinoinensis HOM05D000809 ORTHO05D001196 1.6e-10 69.3 79 53.2
Ciclev10007575m.g Citrus clementina HOM05D000809 ORTHO05D001196 1.6e-10 69.3 78 50.0
Sabra18G0064700 Salix brachista HOM05D000809 ORTHO05D001196 2.1e-10 68.9 79 53.2
Hund09190 Selenicereus undatus HOM05D000809 ORTHO05D001196 2.8e-10 68.6 79 50.6
arahy.Tifrunner.gnm1.ann1.H7I9KA Arachis hypogaea HOM05D000809 ORTHO05D001196 3.6e-10 68.2 75 56.0
arahy.Tifrunner.gnm1.ann1.XGCT1R Arachis hypogaea HOM05D000809 ORTHO05D001196 3.6e-10 68.2 75 56.0
Sed0017287 Sechium edule HOM05D000809 ORTHO05D001196 3.6e-10 68.2 79 49.4
Aqoxy7G01821 Aquilegia oxysepala HOM05D000809 ORTHO05D001196 4.7e-10 67.8 79 50.6
arahy.Tifrunner.gnm1.ann1.KX0H5E Arachis hypogaea HOM05D000809 ORTHO05D001196 6.1e-10 67.4 79 51.9
EL10Ac8g18527 Beta vulgaris HOM05D000809 ORTHO05D001196 6.1e-10 67.4 79 53.2
Dinv41580 Davidia involucrata HOM05D000809 ORTHO05D001196 6.1e-10 67.4 75 56.0
arahy.Tifrunner.gnm1.ann1.JA81W4 Arachis hypogaea HOM05D000809 ORTHO05D001196 8.0e-10 67.0 79 51.9
CAN.G148.21 Capsicum annuum HOM05D000809 ORTHO05D001196 8.0e-10 67.0 79 49.4
Dinv36607 Davidia involucrata HOM05D000809 ORTHO05D001196 8.0e-10 67.0 75 54.7
Rhsim01G0091900 Rhododendron simsii HOM05D000809 ORTHO05D001196 8.0e-10 67.0 75 53.3
Cfa003286 Carpinus fangiana HOM05D000809 ORTHO05D001196 1.0e-09 66.6 79 51.9
Gohir.D05G023000 Gossypium hirsutum HOM05D000809 ORTHO05D001196 1.0e-09 66.6 79 48.1
Gorai.009G023200 Gossypium raimondii HOM05D000809 ORTHO05D001196 1.0e-09 66.6 79 48.1
Ah.14g081540 Amaranthus hybridus HOM05D000809 ORTHO05D001196 1.4e-09 66.2 75 56.0
Nitab4.5_0002512g0050 Nicotiana tabacum HOM05D000809 ORTHO05D001196 1.4e-09 66.2 79 50.6
MELO3C025321.2 Cucumis melo HOM05D000809 ORTHO05D001196 1.8e-09 65.9 79 46.8
Migut.L01603 Erythranthe guttata HOM05D000809 ORTHO05D001196 1.8e-09 65.9 79 50.6
Glyma.07G089000 Glycine max HOM05D000809 ORTHO05D001196 1.8e-09 65.9 75 56.0
Gohir.A05G021500 Gossypium hirsutum HOM05D000809 ORTHO05D001196 1.8e-09 65.9 79 46.8
Lalb_Chr05g0222661 Lupinus albus HOM05D000809 ORTHO05D001196 1.8e-09 65.9 79 51.9
Nitab4.5_0002038g0030 Nicotiana tabacum HOM05D000809 ORTHO05D001196 1.8e-09 65.9 79 49.4
Peaxi162Scf00552g00515 Petunia axillaris HOM05D000809 ORTHO05D001196 1.8e-09 65.9 75 54.7
Phvul.004G161100 Phaseolus vulgaris HOM05D000809 ORTHO05D001196 1.8e-09 65.9 75 56.0
Solyc05g018390.3 Solanum lycopersicum HOM05D000809 ORTHO05D001196 1.8e-09 65.9 79 50.6
Sopen05g015180 Solanum pennellii HOM05D000809 ORTHO05D001196 1.8e-09 65.9 79 50.6
TWI34G1328 Tripterygium wilfordii HOM05D000809 ORTHO05D001196 1.8e-09 65.9 79 51.9
MSTRG.28182 Avicennia marina HOM05D000809 ORTHO05D001196 2.3e-09 65.5 79 49.4
Glyma.09G188000 Glycine max HOM05D000809 ORTHO05D001196 2.3e-09 65.5 75 56.0
Lj4g0023018 Lotus japonicus HOM05D000809 ORTHO05D001196 2.3e-09 65.5 75 54.7
Ca_25515_v3 Cicer arietinum L. HOM05D000809 ORTHO05D001196 3.0e-09 65.1 75 54.7
Cc06_g09390 Coffea canephora HOM05D000809 ORTHO05D001196 3.0e-09 65.1 75 53.3
COL.COLO4_34883 Corchorus olitorius HOM05D000809 ORTHO05D007733 3.0e-09 65.1 75 53.3
Nn8g39256 Nelumbo nucifera HOM05D000809 ORTHO05D001196 3.0e-09 65.1 79 50.6
PGR102G1457 Punica granatum HOM05D000809 ORTHO05D001196 3.0e-09 65.1 78 51.3
TPR.G31454 Trifolium pratense HOM05D000809 ORTHO05D001196 3.0e-09 65.1 75 54.7
vmacro20665 Vaccinium macrocarpon HOM05D000809 ORTHO05D001196 3.0e-09 65.1 79 49.4
Actinidia20341 Actinidia chinensis HOM05D000809 ORTHO05D001196 4.0e-09 64.7 75 53.3
MBI01_g16645_MAGBIO Magnolia biondii HOM05D000809 ORTHO05D001196 4.0e-09 64.7 79 46.8
Medtr6g085190 Medicago truncatula HOM05D000809 ORTHO05D001196 4.0e-09 64.7 75 54.7
Peaxi162Scf00560g00515 Petunia axillaris HOM05D000809 ORTHO05D001196 4.0e-09 64.7 75 54.7
Sed0018696 Sechium edule HOM05D000809 ORTHO05D001196 4.0e-09 64.7 79 48.1
TWI32G1189 Tripterygium wilfordii HOM05D000809 ORTHO05D001196 4.0e-09 64.7 79 50.6
Lalb_Chr09g0331131 Lupinus albus HOM05D000809 ORTHO05D001196 5.2e-09 64.3 75 53.3
MSTRG.4909 Avicennia marina HOM05D000809 ORTHO05D001196 6.8e-09 63.9 79 48.1
CsaV3_1G030800 Cucumis sativus L. HOM05D000809 ORTHO05D001196 6.8e-09 63.9 76 47.4
Glyma.05G232400 Glycine max HOM05D000809 ORTHO05D001196 6.8e-09 63.9 75 53.3
Lalb_Chr24g0397651 Lupinus albus HOM05D000809 ORTHO05D001196 6.8e-09 63.9 75 54.7
Sc08g0007220 Simmondsia chinensis HOM05D000809 ORTHO05D001196 6.8e-09 63.9 75 53.3
VMungo0464G1738 Vigna mungo HOM05D000809 ORTHO05D001196 6.8e-09 63.9 75 54.7
CDE06G1916 Ceratophyllum demersum HOM05D000809 ORTHO05D001196 8.9e-09 63.5 79 49.4
SalBow5G1676 Salvia bowleyana HOM05D000809 ORTHO05D001196 8.9e-09 63.5 75 50.7
AUR62011018 Chenopodium quinoa HOM05D000809 ORTHO05D001196 1.2e-08 63.2 79 50.6
Sed0012114 Sechium edule HOM05D000809 ORTHO05D001196 1.2e-08 63.2 79 46.8
Thecc.09G114000 Theobroma cacao HOM05D000809 ORTHO05D001196 1.2e-08 63.2 75 50.7
Atru.chr7.1305 Acer truncatum HOM05D000809 ORTHO05D001196 1.5e-08 62.8 79 44.3
CSS0027452 Camellia sinensis var. sinensis HOM05D000809 ORTHO05D001196 1.5e-08 62.8 74 51.4
AUR62033391 Chenopodium quinoa HOM05D000809 ORTHO05D001196 1.5e-08 62.8 79 49.4
Lalb_Chr14g0371351 Lupinus albus HOM05D000809 ORTHO05D001196 1.5e-08 62.8 79 49.4
Psat1g039600 Pisum sativum HOM05D000809 ORTHO05D001196 1.5e-08 62.8 75 52.0
Actinidia07418 Actinidia chinensis HOM05D000809 ORTHO05D001196 2.0e-08 62.4 75 50.7
ATR1120G181 Amborella trichopoda HOM05D000809 ORTHO05D001196 2.0e-08 62.4 79 45.6
ClCG06G010350 Citrullus lanatus HOM05D000809 ORTHO05D001196 2.0e-08 62.4 79 45.6
ClCG06G010370 Citrullus lanatus HOM05D000809 ORTHO05D001196 2.0e-08 62.4 79 45.6
Potri.006G158676 Populus trichocarpa HOM05D000809 ORTHO05D001196 2.0e-08 62.4 76 48.7
SGA_v2.0_scaffold11G05539 Striga asiatica HOM05D000809 ORTHO05D001196 2.0e-08 62.4 79 49.4
CSS0031088 Camellia sinensis var. sinensis HOM05D000809 ORTHO05D001196 2.6e-08 62.0 79 49.4
ClCG11G002600 Citrullus lanatus HOM05D000809 ORTHO05D001196 2.6e-08 62.0 79 45.6
PSO782G3528 Papaver somniferum HOM05D000809 ORTHO05D001196 2.6e-08 62.0 79 45.6
TAR626G1765 Trochodendron aralioides HOM05D000809 ORTHO05D001196 2.6e-08 62.0 79 48.1
Glyma.08G039800 Glycine max HOM05D000809 ORTHO05D001196 3.4e-08 61.6 79 49.4
Lj7C645G8 Lonicera japonica HOM05D000809 ORTHO05D001196 3.4e-08 61.6 75 50.7
PSO063G0277 Papaver somniferum HOM05D000809 ORTHO05D001196 3.4e-08 61.6 79 45.6
TAR636G2401 Trochodendron aralioides HOM05D000809 ORTHO05D001196 3.4e-08 61.6 79 46.8
VMungo0251G3045 Vigna mungo HOM05D000809 ORTHO05D001196 3.4e-08 61.6 75 50.7
TWI63G0537 Tripterygium wilfordii HOM05D000809 ORTHO05D001196 4.4e-08 61.2 79 49.4
MELO3C004546.2 Cucumis melo HOM05D000809 ORTHO05D001196 5.7e-08 60.8 79 44.3
ECA234G0384 Erigeron canadensis HOM05D000809 ORTHO05D001196 5.7e-08 60.8 79 46.8
Eucgr.C01072 Eucalyptus grandis HOM05D000809 ORTHO05D001196 5.7e-08 60.8 79 46.8
SalBow5G0081 Salvia bowleyana HOM05D000809 ORTHO05D001196 7.5e-08 60.5 75 46.7
GSVIVG01035732001 Vitis vinifera HOM05D000809 ORTHO05D001196 7.5e-08 60.5 79 44.3
Lj2g0007105 Lotus japonicus HOM05D000809 ORTHO05D001196 9.8e-08 60.1 78 48.7
TPR.G21710 Trifolium pratense HOM05D000809 ORTHO05D001196 9.8e-08 60.1 75 50.7
Lsat_1_v5_gn_8_93421 Lactuca sativa HOM05D000809 ORTHO05D001196 1.3e-07 59.7 79 46.8
Lalb_Chr16g0387981 Lupinus albus HOM05D000809 ORTHO05D001196 1.3e-07 59.7 75 50.7
TAR624G0463 Trochodendron aralioides HOM05D000809 ORTHO05D007733 1.3e-07 59.7 79 45.6
vmacro06201 Vaccinium macrocarpon HOM05D000809 ORTHO05D001196 1.3e-07 59.7 75 49.3
unitig_8.g3328 Utricularia gibba HOM05D000809 ORTHO05D001196 1.7e-07 59.3 79 43.0
CsaV3_2G002420 Cucumis sativus L. HOM05D000809 ORTHO05D001196 2.2e-07 58.9 79 44.3
Oeu055125.1 Olea europaea HOM05D000809 ORTHO05D001196 2.2e-07 58.9 79 45.6
Oeu053572.1 Olea europaea HOM05D000809 ORTHO05D001196 3.7e-07 58.2 79 49.4
Rhsim03G0244500 Rhododendron simsii HOM05D000809 ORTHO05D001196 4.9e-07 57.8 75 46.7
SHI03194 Sapria himalayana HOM05D000809 ORTHO05D001196 4.9e-07 57.8 79 45.6
TPR.G14441 Trifolium pratense HOM05D000809 ORTHO05D001196 4.9e-07 57.8 70 54.3
DCAR_010441 Daucus carota HOM05D000809 ORTHO05D001196 8.3e-07 57.0 79 43.0
Psat7g014080 Pisum sativum HOM05D000809 ORTHO05D001196 1.1e-06 56.6 75 48.0
MSTRG.17164 Avicennia marina HOM05D000809 ORTHO05D001196 2.4e-06 55.5 78 43.6
HanXRQChr10g0317751 Helianthus annuus HOM05D000809 ORTHO05D001196 2.4e-06 55.5 79 43.0
Lalb_Chr13g0292161 Lupinus albus HOM05D000809 ORTHO05D001196 2.4e-06 55.5 79 45.6
unitig_22.g6706 Utricularia gibba HOM05D000809 ORTHO05D001196 2.4e-06 55.5 79 40.5
PGR142G0112 Punica granatum HOM05D000809 ORTHO05D001196 4.1e-06 54.7 84 44.0
THA.LOC104808750 Tarenaya hassleriana HOM05D000809 ORTHO05D001196 5.4e-06 54.3 77 45.5
Ca_17346_v3 Cicer arietinum L. HOM05D000809 ORTHO05D001196 7.0e-06 53.9 75 45.3
Os05g0145400 Oryza sativa ssp. japonica HOM05D000809 ORTHO05D001196 9.2e-06 53.5 78 41.0


User provided reference genes

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